Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD4:A5:B4
Extra
PDB:
ATOM 1 O3' A A 4 8.353 10.526 88.194 1.00 28.12 O
ATOM 2 P C A 5 9.724 11.341 88.378 1.00 30.57 P
ATOM 3 OP1 C A 5 9.960 11.486 89.838 1.00 30.39 O
ATOM 4 OP2 C A 5 9.642 12.548 87.525 1.00 28.16 O
ATOM 5 O5' C A 5 10.835 10.385 87.763 1.00 29.48 O
ATOM 6 C5' C A 5 11.112 9.118 88.337 1.00 30.15 C
ATOM 7 C4' C A 5 12.089 8.370 87.469 1.00 31.80 C
ATOM 8 O4' C A 5 11.442 7.924 86.244 1.00 31.40 O
ATOM 9 C3' C A 5 13.223 9.226 86.956 1.00 31.62 C
ATOM 10 O3' C A 5 14.205 9.463 87.947 1.00 35.63 O
ATOM 11 C2' C A 5 13.704 8.419 85.758 1.00 30.92 C
ATOM 12 O2' C A 5 14.463 7.277 86.097 1.00 27.09 O
ATOM 13 C1' C A 5 12.366 7.979 85.166 1.00 28.40 C
ATOM 14 N1 C A 5 11.867 8.942 84.173 1.00 25.87 N
ATOM 15 C2 C A 5 12.318 8.830 82.859 1.00 26.02 C
ATOM 16 O2 C A 5 13.134 7.935 82.584 1.00 26.13 O
ATOM 17 N3 C A 5 11.859 9.696 81.925 1.00 24.88 N
ATOM 18 C4 C A 5 10.989 10.648 82.267 1.00 23.87 C
ATOM 19 N4 C A 5 10.550 11.470 81.308 1.00 24.05 N
ATOM 20 C5 C A 5 10.524 10.797 83.607 1.00 23.96 C
ATOM 21 C6 C A 5 10.981 9.926 84.518 1.00 24.45 C
ATOM 22 P A A 6 15.222 10.681 87.750 1.00 37.53 P
ATOM 23 OP1 A A 6 16.098 10.774 88.944 1.00 39.29 O
ATOM 24 OP2 A A 6 14.481 11.882 87.287 1.00 36.44 O
ATOM 25 O5' A A 6 16.101 10.155 86.540 1.00 37.34 O
TER
ATOM 1 O3' C B 3 7.777 16.850 75.767 1.00 37.55 O
ATOM 2 P A B 4 6.841 15.601 75.372 1.00 38.08 P
ATOM 3 OP1 A B 4 6.787 15.563 73.884 1.00 38.53 O
ATOM 4 OP2 A B 4 5.579 15.691 76.146 1.00 38.81 O
ATOM 5 O5' A B 4 7.668 14.346 75.906 1.00 36.49 O
ATOM 6 C5' A B 4 7.916 13.203 75.088 1.00 31.28 C
ATOM 7 C4' A B 4 9.280 13.309 74.441 1.00 29.12 C
ATOM 8 O4' A B 4 10.245 13.845 75.388 1.00 27.81 O
ATOM 9 C3' A B 4 9.887 11.991 73.983 1.00 27.97 C
ATOM 10 O3' A B 4 9.427 11.626 72.689 1.00 28.64 O
ATOM 11 C2' A B 4 11.368 12.330 73.953 1.00 27.75 C
ATOM 12 O2' A B 4 11.695 13.096 72.813 1.00 27.70 O
ATOM 13 C1' A B 4 11.497 13.196 75.209 1.00 26.80 C
ATOM 14 N9 A B 4 11.761 12.397 76.405 1.00 26.11 N
ATOM 15 C8 A B 4 11.049 12.405 77.580 1.00 25.42 C
ATOM 16 N7 A B 4 11.513 11.580 78.485 1.00 24.33 N
ATOM 17 C5 A B 4 12.608 10.989 77.869 1.00 23.58 C
ATOM 18 C6 A B 4 13.537 10.029 78.311 1.00 24.61 C
ATOM 19 N6 A B 4 13.517 9.478 79.538 1.00 22.55 N
ATOM 20 N1 A B 4 14.506 9.651 77.446 1.00 23.48 N
ATOM 21 C2 A B 4 14.535 10.213 76.225 1.00 23.64 C
ATOM 22 N3 A B 4 13.724 11.128 75.699 1.00 22.79 N
ATOM 23 C4 A B 4 12.771 11.481 76.584 1.00 24.13 C
ATOM 24 P C B 5 8.645 10.238 72.487 1.00 30.44 P
ATOM 25 OP1 C B 5 8.557 9.989 71.024 1.00 31.19 O
ATOM 26 OP2 C B 5 7.402 10.306 73.294 1.00 28.59 O
ATOM 27 O5' C B 5 9.598 9.151 73.146 1.00 30.10 O
TER
ATOM 2 P C A 5 9.724 11.341 88.378 1.00 30.57 P
ATOM 3 OP1 C A 5 9.960 11.486 89.838 1.00 30.39 O
ATOM 4 OP2 C A 5 9.642 12.548 87.525 1.00 28.16 O
ATOM 5 O5' C A 5 10.835 10.385 87.763 1.00 29.48 O
ATOM 6 C5' C A 5 11.112 9.118 88.337 1.00 30.15 C
ATOM 7 C4' C A 5 12.089 8.370 87.469 1.00 31.80 C
ATOM 8 O4' C A 5 11.442 7.924 86.244 1.00 31.40 O
ATOM 9 C3' C A 5 13.223 9.226 86.956 1.00 31.62 C
ATOM 10 O3' C A 5 14.205 9.463 87.947 1.00 35.63 O
ATOM 11 C2' C A 5 13.704 8.419 85.758 1.00 30.92 C
ATOM 12 O2' C A 5 14.463 7.277 86.097 1.00 27.09 O
ATOM 13 C1' C A 5 12.366 7.979 85.166 1.00 28.40 C
ATOM 14 N1 C A 5 11.867 8.942 84.173 1.00 25.87 N
ATOM 15 C2 C A 5 12.318 8.830 82.859 1.00 26.02 C
ATOM 16 O2 C A 5 13.134 7.935 82.584 1.00 26.13 O
ATOM 17 N3 C A 5 11.859 9.696 81.925 1.00 24.88 N
ATOM 18 C4 C A 5 10.989 10.648 82.267 1.00 23.87 C
ATOM 19 N4 C A 5 10.550 11.470 81.308 1.00 24.05 N
ATOM 20 C5 C A 5 10.524 10.797 83.607 1.00 23.96 C
ATOM 21 C6 C A 5 10.981 9.926 84.518 1.00 24.45 C
ATOM 22 P A A 6 15.222 10.681 87.750 1.00 37.53 P
ATOM 23 OP1 A A 6 16.098 10.774 88.944 1.00 39.29 O
ATOM 24 OP2 A A 6 14.481 11.882 87.287 1.00 36.44 O
ATOM 25 O5' A A 6 16.101 10.155 86.540 1.00 37.34 O
TER
ATOM 1 O3' C B 3 7.777 16.850 75.767 1.00 37.55 O
ATOM 2 P A B 4 6.841 15.601 75.372 1.00 38.08 P
ATOM 3 OP1 A B 4 6.787 15.563 73.884 1.00 38.53 O
ATOM 4 OP2 A B 4 5.579 15.691 76.146 1.00 38.81 O
ATOM 5 O5' A B 4 7.668 14.346 75.906 1.00 36.49 O
ATOM 6 C5' A B 4 7.916 13.203 75.088 1.00 31.28 C
ATOM 7 C4' A B 4 9.280 13.309 74.441 1.00 29.12 C
ATOM 8 O4' A B 4 10.245 13.845 75.388 1.00 27.81 O
ATOM 9 C3' A B 4 9.887 11.991 73.983 1.00 27.97 C
ATOM 10 O3' A B 4 9.427 11.626 72.689 1.00 28.64 O
ATOM 11 C2' A B 4 11.368 12.330 73.953 1.00 27.75 C
ATOM 12 O2' A B 4 11.695 13.096 72.813 1.00 27.70 O
ATOM 13 C1' A B 4 11.497 13.196 75.209 1.00 26.80 C
ATOM 14 N9 A B 4 11.761 12.397 76.405 1.00 26.11 N
ATOM 15 C8 A B 4 11.049 12.405 77.580 1.00 25.42 C
ATOM 16 N7 A B 4 11.513 11.580 78.485 1.00 24.33 N
ATOM 17 C5 A B 4 12.608 10.989 77.869 1.00 23.58 C
ATOM 18 C6 A B 4 13.537 10.029 78.311 1.00 24.61 C
ATOM 19 N6 A B 4 13.517 9.478 79.538 1.00 22.55 N
ATOM 20 N1 A B 4 14.506 9.651 77.446 1.00 23.48 N
ATOM 21 C2 A B 4 14.535 10.213 76.225 1.00 23.64 C
ATOM 22 N3 A B 4 13.724 11.128 75.699 1.00 22.79 N
ATOM 23 C4 A B 4 12.771 11.481 76.584 1.00 24.13 C
ATOM 24 P C B 5 8.645 10.238 72.487 1.00 30.44 P
ATOM 25 OP1 C B 5 8.557 9.989 71.024 1.00 31.19 O
ATOM 26 OP2 C B 5 7.402 10.306 73.294 1.00 28.59 O
ATOM 27 O5' C B 5 9.598 9.151 73.146 1.00 30.10 O
TER
Atoms:
C2: (12.318,8.830,82.859)
OP1: (9.960,11.486,89.838)
OP2: (9.642,12.548,87.525)
C4: (10.989,10.648,82.267)
O5': (10.835,10.385,87.763)
C3': (13.223,9.226,86.956)
C1': (12.366,7.979,85.166)
O4': (11.442,7.924,86.244)
C5': (11.112,9.118,88.337)
P: (9.724,11.341,88.378)
O2: (13.134,7.935,82.584)
C4': (12.089,8.370,87.469)
C2': (13.704,8.419,85.758)
O2': (14.463,7.277,86.097)
N1: (11.867,8.942,84.173)
N3: (11.859,9.696,81.925)
N4: (10.550,11.470,81.308)
C6: (10.981,9.926,84.518)
C5: (10.524,10.797,83.607)
O3': (14.205,9.463,87.947)
OP1: (9.960,11.486,89.838)
OP2: (9.642,12.548,87.525)
C4: (10.989,10.648,82.267)
O5': (10.835,10.385,87.763)
C3': (13.223,9.226,86.956)
C1': (12.366,7.979,85.166)
O4': (11.442,7.924,86.244)
C5': (11.112,9.118,88.337)
P: (9.724,11.341,88.378)
O2: (13.134,7.935,82.584)
C4': (12.089,8.370,87.469)
C2': (13.704,8.419,85.758)
O2': (14.463,7.277,86.097)
N1: (11.867,8.942,84.173)
N3: (11.859,9.696,81.925)
N4: (10.550,11.470,81.308)
C6: (10.981,9.926,84.518)
C5: (10.524,10.797,83.607)
O3': (14.205,9.463,87.947)
OP1: (6.787,15.563,73.884)
OP2: (5.579,15.691,76.146)
C3': (9.887,11.991,73.983)
C1': (11.497,13.196,75.209)
C5': (7.916,13.203,75.088)
O4': (10.245,13.845,75.388)
C8: (11.049,12.405,77.580)
O2': (11.695,13.096,72.813)
C6: (13.537,10.029,78.311)
C5: (12.608,10.989,77.869)
C4: (12.771,11.481,76.584)
P: (6.841,15.601,75.372)
C4': (9.280,13.309,74.441)
C2': (11.368,12.330,73.953)
C2: (14.535,10.213,76.225)
N1: (14.506,9.651,77.446)
N3: (13.724,11.128,75.699)
N6: (13.517,9.478,79.538)
N7: (11.513,11.580,78.485)
N9: (11.761,12.397,76.405)
O5': (7.668,14.346,75.906)
O3': (9.427,11.626,72.689)
OP2: (5.579,15.691,76.146)
C3': (9.887,11.991,73.983)
C1': (11.497,13.196,75.209)
C5': (7.916,13.203,75.088)
O4': (10.245,13.845,75.388)
C8: (11.049,12.405,77.580)
O2': (11.695,13.096,72.813)
C6: (13.537,10.029,78.311)
C5: (12.608,10.989,77.869)
C4: (12.771,11.481,76.584)
P: (6.841,15.601,75.372)
C4': (9.280,13.309,74.441)
C2': (11.368,12.330,73.953)
C2: (14.535,10.213,76.225)
N1: (14.506,9.651,77.446)
N3: (13.724,11.128,75.699)
N6: (13.517,9.478,79.538)
N7: (11.513,11.580,78.485)
N9: (11.761,12.397,76.405)
O5': (7.668,14.346,75.906)
O3': (9.427,11.626,72.689)
Image (generated by PyMOL):