Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12235:12234
Extra
PDB:
ATOM 1 O3' U A2234 6.434 -29.856 112.729 1.00 54.92 O
ATOM 2 P U A2235 6.365 -30.697 114.096 1.00 54.14 P
ATOM 3 OP1 U A2235 4.950 -30.639 114.568 1.00 54.44 O
ATOM 4 OP2 U A2235 7.433 -30.183 114.987 1.00 54.21 O
ATOM 5 O5' U A2235 6.713 -32.186 113.624 1.00 54.14 O
ATOM 6 C5' U A2235 5.794 -32.961 112.860 1.00 54.14 C
ATOM 7 C4' U A2235 6.439 -34.229 112.342 1.00 54.09 C
ATOM 8 O4' U A2235 7.462 -33.903 111.344 1.00 53.66 O
ATOM 9 C3' U A2235 7.189 -35.076 113.366 1.00 54.38 C
ATOM 10 O3' U A2235 6.344 -35.882 114.151 1.00 54.80 O
ATOM 11 C2' U A2235 8.129 -35.875 112.476 1.00 54.15 C
ATOM 12 O2' U A2235 7.423 -36.904 111.797 1.00 54.20 O
ATOM 13 C1' U A2235 8.533 -34.817 111.443 1.00 53.69 C
ATOM 14 N1 U A2235 9.737 -34.089 111.871 1.00 53.57 N
ATOM 15 C2 U A2235 10.930 -34.617 111.436 1.00 53.40 C
ATOM 16 O2 U A2235 10.961 -35.573 110.696 1.00 53.34 O
ATOM 17 N3 U A2235 12.061 -33.933 111.849 1.00 53.31 N
ATOM 18 C4 U A2235 12.127 -32.820 112.683 1.00 53.38 C
ATOM 19 O4 U A2235 13.237 -32.346 112.988 1.00 53.30 O
ATOM 20 C5 U A2235 10.827 -32.353 113.133 1.00 53.57 C
ATOM 21 C6 U A2235 9.713 -32.986 112.726 1.00 53.66 C
ATOM 22 P G A2236 6.705 -36.224 115.680 1.00 52.44 P
ATOM 23 OP1 G A2236 5.436 -36.573 116.373 1.00 52.84 O
ATOM 24 OP2 G A2236 7.503 -35.111 116.212 1.00 52.35 O
ATOM 25 O5' G A2236 7.612 -37.519 115.543 1.00 52.49 O
TER
ATOM 1 O3' U B2233 10.043 -24.470 112.760 1.00 47.56 O
ATOM 2 P U B2234 9.633 -25.591 113.833 1.00 54.46 P
ATOM 3 OP1 U B2234 8.472 -25.042 114.557 1.00 54.75 O
ATOM 4 OP2 U B2234 10.831 -25.952 114.602 1.00 54.58 O
ATOM 5 O5' U B2234 9.188 -26.811 112.915 1.00 54.36 O
ATOM 6 C5' U B2234 7.830 -26.948 112.544 1.00 54.43 C
ATOM 7 C4' U B2234 7.628 -28.080 111.586 1.00 54.30 C
ATOM 8 O4' U B2234 8.695 -28.069 110.623 1.00 53.93 O
ATOM 9 C3' U B2234 7.670 -29.473 112.178 1.00 54.59 C
ATOM 10 O3' U B2234 6.434 -29.856 112.729 1.00 54.92 O
ATOM 11 C2' U B2234 8.091 -30.335 110.993 1.00 54.32 C
ATOM 12 O2' U B2234 6.970 -30.654 110.178 1.00 54.28 O
ATOM 13 C1' U B2234 8.997 -29.379 110.215 1.00 53.92 C
ATOM 14 N1 U B2234 10.433 -29.614 110.460 1.00 53.85 N
ATOM 15 C2 U B2234 11.045 -30.647 109.806 1.00 53.73 C
ATOM 16 O2 U B2234 10.464 -31.405 109.069 1.00 53.70 O
ATOM 17 N3 U B2234 12.372 -30.765 110.074 1.00 53.68 N
ATOM 18 C4 U B2234 13.138 -29.959 110.893 1.00 53.73 C
ATOM 19 O4 U B2234 14.345 -30.193 111.011 1.00 53.67 O
ATOM 20 C5 U B2234 12.441 -28.895 111.522 1.00 53.84 C
ATOM 21 C6 U B2234 11.138 -28.760 111.280 1.00 53.90 C
ATOM 22 P U B2235 6.365 -30.697 114.096 1.00 54.14 P
ATOM 23 OP1 U B2235 4.950 -30.639 114.568 1.00 54.44 O
ATOM 24 OP2 U B2235 7.433 -30.183 114.987 1.00 54.21 O
ATOM 25 O5' U B2235 6.713 -32.186 113.624 1.00 54.14 O
TER
ATOM 2 P U A2235 6.365 -30.697 114.096 1.00 54.14 P
ATOM 3 OP1 U A2235 4.950 -30.639 114.568 1.00 54.44 O
ATOM 4 OP2 U A2235 7.433 -30.183 114.987 1.00 54.21 O
ATOM 5 O5' U A2235 6.713 -32.186 113.624 1.00 54.14 O
ATOM 6 C5' U A2235 5.794 -32.961 112.860 1.00 54.14 C
ATOM 7 C4' U A2235 6.439 -34.229 112.342 1.00 54.09 C
ATOM 8 O4' U A2235 7.462 -33.903 111.344 1.00 53.66 O
ATOM 9 C3' U A2235 7.189 -35.076 113.366 1.00 54.38 C
ATOM 10 O3' U A2235 6.344 -35.882 114.151 1.00 54.80 O
ATOM 11 C2' U A2235 8.129 -35.875 112.476 1.00 54.15 C
ATOM 12 O2' U A2235 7.423 -36.904 111.797 1.00 54.20 O
ATOM 13 C1' U A2235 8.533 -34.817 111.443 1.00 53.69 C
ATOM 14 N1 U A2235 9.737 -34.089 111.871 1.00 53.57 N
ATOM 15 C2 U A2235 10.930 -34.617 111.436 1.00 53.40 C
ATOM 16 O2 U A2235 10.961 -35.573 110.696 1.00 53.34 O
ATOM 17 N3 U A2235 12.061 -33.933 111.849 1.00 53.31 N
ATOM 18 C4 U A2235 12.127 -32.820 112.683 1.00 53.38 C
ATOM 19 O4 U A2235 13.237 -32.346 112.988 1.00 53.30 O
ATOM 20 C5 U A2235 10.827 -32.353 113.133 1.00 53.57 C
ATOM 21 C6 U A2235 9.713 -32.986 112.726 1.00 53.66 C
ATOM 22 P G A2236 6.705 -36.224 115.680 1.00 52.44 P
ATOM 23 OP1 G A2236 5.436 -36.573 116.373 1.00 52.84 O
ATOM 24 OP2 G A2236 7.503 -35.111 116.212 1.00 52.35 O
ATOM 25 O5' G A2236 7.612 -37.519 115.543 1.00 52.49 O
TER
ATOM 1 O3' U B2233 10.043 -24.470 112.760 1.00 47.56 O
ATOM 2 P U B2234 9.633 -25.591 113.833 1.00 54.46 P
ATOM 3 OP1 U B2234 8.472 -25.042 114.557 1.00 54.75 O
ATOM 4 OP2 U B2234 10.831 -25.952 114.602 1.00 54.58 O
ATOM 5 O5' U B2234 9.188 -26.811 112.915 1.00 54.36 O
ATOM 6 C5' U B2234 7.830 -26.948 112.544 1.00 54.43 C
ATOM 7 C4' U B2234 7.628 -28.080 111.586 1.00 54.30 C
ATOM 8 O4' U B2234 8.695 -28.069 110.623 1.00 53.93 O
ATOM 9 C3' U B2234 7.670 -29.473 112.178 1.00 54.59 C
ATOM 10 O3' U B2234 6.434 -29.856 112.729 1.00 54.92 O
ATOM 11 C2' U B2234 8.091 -30.335 110.993 1.00 54.32 C
ATOM 12 O2' U B2234 6.970 -30.654 110.178 1.00 54.28 O
ATOM 13 C1' U B2234 8.997 -29.379 110.215 1.00 53.92 C
ATOM 14 N1 U B2234 10.433 -29.614 110.460 1.00 53.85 N
ATOM 15 C2 U B2234 11.045 -30.647 109.806 1.00 53.73 C
ATOM 16 O2 U B2234 10.464 -31.405 109.069 1.00 53.70 O
ATOM 17 N3 U B2234 12.372 -30.765 110.074 1.00 53.68 N
ATOM 18 C4 U B2234 13.138 -29.959 110.893 1.00 53.73 C
ATOM 19 O4 U B2234 14.345 -30.193 111.011 1.00 53.67 O
ATOM 20 C5 U B2234 12.441 -28.895 111.522 1.00 53.84 C
ATOM 21 C6 U B2234 11.138 -28.760 111.280 1.00 53.90 C
ATOM 22 P U B2235 6.365 -30.697 114.096 1.00 54.14 P
ATOM 23 OP1 U B2235 4.950 -30.639 114.568 1.00 54.44 O
ATOM 24 OP2 U B2235 7.433 -30.183 114.987 1.00 54.21 O
ATOM 25 O5' U B2235 6.713 -32.186 113.624 1.00 54.14 O
TER
Atoms:
C4: (12.127,-32.820,112.683)
N3: (12.061,-33.933,111.849)
OP1: (4.950,-30.639,114.568)
OP2: (7.433,-30.183,114.987)
C2: (10.930,-34.617,111.436)
C1': (8.533,-34.817,111.443)
C3': (7.189,-35.076,113.366)
O5': (6.713,-32.186,113.624)
O4': (7.462,-33.903,111.344)
C5': (5.794,-32.961,112.860)
P: (6.365,-30.697,114.096)
C4': (6.439,-34.229,112.342)
C2': (8.129,-35.875,112.476)
O2': (7.423,-36.904,111.797)
N1: (9.737,-34.089,111.871)
O4: (13.237,-32.346,112.988)
O2: (10.961,-35.573,110.696)
C6: (9.713,-32.986,112.726)
C5: (10.827,-32.353,113.133)
O3': (6.344,-35.882,114.151)
N3: (12.061,-33.933,111.849)
OP1: (4.950,-30.639,114.568)
OP2: (7.433,-30.183,114.987)
C2: (10.930,-34.617,111.436)
C1': (8.533,-34.817,111.443)
C3': (7.189,-35.076,113.366)
O5': (6.713,-32.186,113.624)
O4': (7.462,-33.903,111.344)
C5': (5.794,-32.961,112.860)
P: (6.365,-30.697,114.096)
C4': (6.439,-34.229,112.342)
C2': (8.129,-35.875,112.476)
O2': (7.423,-36.904,111.797)
N1: (9.737,-34.089,111.871)
O4: (13.237,-32.346,112.988)
O2: (10.961,-35.573,110.696)
C6: (9.713,-32.986,112.726)
C5: (10.827,-32.353,113.133)
O3': (6.344,-35.882,114.151)
C4: (13.138,-29.959,110.893)
N3: (12.372,-30.765,110.074)
OP1: (8.472,-25.042,114.557)
OP2: (10.831,-25.952,114.602)
C2: (11.045,-30.647,109.806)
C1': (8.997,-29.379,110.215)
C3': (7.670,-29.473,112.178)
O5': (9.188,-26.811,112.915)
O4': (8.695,-28.069,110.623)
C5': (7.830,-26.948,112.544)
P: (9.633,-25.591,113.833)
C4': (7.628,-28.080,111.586)
C2': (8.091,-30.335,110.993)
O2': (6.970,-30.654,110.178)
N1: (10.433,-29.614,110.460)
O4: (14.345,-30.193,111.011)
O2: (10.464,-31.405,109.069)
C6: (11.138,-28.760,111.280)
C5: (12.441,-28.895,111.522)
O3': (6.434,-29.856,112.729)
N3: (12.372,-30.765,110.074)
OP1: (8.472,-25.042,114.557)
OP2: (10.831,-25.952,114.602)
C2: (11.045,-30.647,109.806)
C1': (8.997,-29.379,110.215)
C3': (7.670,-29.473,112.178)
O5': (9.188,-26.811,112.915)
O4': (8.695,-28.069,110.623)
C5': (7.830,-26.948,112.544)
P: (9.633,-25.591,113.833)
C4': (7.628,-28.080,111.586)
C2': (8.091,-30.335,110.993)
O2': (6.970,-30.654,110.178)
N1: (10.433,-29.614,110.460)
O4: (14.345,-30.193,111.011)
O2: (10.464,-31.405,109.069)
C6: (11.138,-28.760,111.280)
C5: (12.441,-28.895,111.522)
O3': (6.434,-29.856,112.729)
Image (generated by PyMOL):