Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01002:0913
Extra
PDB:
ATOM 1 O3' U A1001 48.964 96.649 82.604 1.00 25.80 O
ATOM 2 P C A1002 50.456 97.203 82.761 1.00 28.25 P
ATOM 3 OP1 C A1002 50.493 97.951 84.043 1.00 26.75 O
ATOM 4 OP2 C A1002 50.866 97.870 81.501 1.00 27.47 O
ATOM 5 O5' C A1002 51.346 95.894 82.889 1.00 25.71 O
ATOM 6 C5' C A1002 51.083 94.935 83.914 1.00 28.05 C
ATOM 7 C4' C A1002 52.049 93.795 83.806 1.00 28.48 C
ATOM 8 O4' C A1002 51.811 93.053 82.586 1.00 28.05 O
ATOM 9 C3' C A1002 53.496 94.213 83.646 1.00 29.49 C
ATOM 10 O3' C A1002 54.023 94.610 84.911 1.00 33.45 O
ATOM 11 C2' C A1002 54.128 92.929 83.114 1.00 28.32 C
ATOM 12 O2' C A1002 54.364 91.997 84.141 1.00 30.68 O
ATOM 13 C1' C A1002 52.998 92.366 82.243 1.00 27.76 C
ATOM 14 N1 C A1002 53.216 92.457 80.789 1.00 27.50 N
ATOM 15 C2 C A1002 54.037 91.504 80.189 1.00 28.59 C
ATOM 16 O2 C A1002 54.545 90.618 80.897 1.00 31.51 O
ATOM 17 N3 C A1002 54.256 91.565 78.854 1.00 26.75 N
ATOM 18 C4 C A1002 53.685 92.522 78.125 1.00 23.93 C
ATOM 19 N4 C A1002 53.926 92.527 76.810 1.00 23.74 N
ATOM 20 C5 C A1002 52.841 93.509 78.709 1.00 23.05 C
ATOM 21 C6 C A1002 52.635 93.440 80.034 1.00 25.87 C
ATOM 22 P C A1003 55.168 95.735 84.992 1.00 31.93 P
ATOM 23 OP1 C A1003 55.810 95.820 83.671 1.00 34.98 O
ATOM 24 OP2 C A1003 55.989 95.406 86.182 1.00 36.32 O
ATOM 25 O5' C A1003 54.417 97.115 85.275 1.00 30.35 O
TER
ATOM 1 O3' C B 912 55.500 94.780 71.228 1.00 31.76 O
ATOM 2 P A B 913 54.081 94.037 71.233 1.00 30.52 P
ATOM 3 OP1 A B 913 53.343 94.525 70.036 1.00 30.35 O
ATOM 4 OP2 A B 913 53.464 94.158 72.577 1.00 29.00 O
ATOM 5 O5' A B 913 54.488 92.521 70.992 1.00 27.00 O
ATOM 6 C5' A B 913 55.245 92.166 69.835 1.00 24.97 C
ATOM 7 C4' A B 913 55.948 90.853 70.049 1.00 27.12 C
ATOM 8 O4' A B 913 56.915 90.969 71.122 1.00 25.24 O
ATOM 9 C3' A B 913 55.077 89.689 70.484 1.00 27.32 C
ATOM 10 O3' A B 913 54.376 89.118 69.388 1.00 29.53 O
ATOM 11 C2' A B 913 56.122 88.748 71.044 1.00 25.11 C
ATOM 12 O2' A B 913 56.871 88.202 69.984 1.00 26.47 O
ATOM 13 C1' A B 913 57.019 89.729 71.797 1.00 22.94 C
ATOM 14 N9 A B 913 56.626 89.925 73.195 1.00 21.26 N
ATOM 15 C8 A B 913 55.917 90.965 73.735 1.00 21.16 C
ATOM 16 N7 A B 913 55.752 90.876 75.032 1.00 20.67 N
ATOM 17 C5 A B 913 56.390 89.695 75.368 1.00 18.31 C
ATOM 18 C6 A B 913 56.579 89.042 76.597 1.00 19.36 C
ATOM 19 N6 A B 913 56.156 89.522 77.765 1.00 18.65 N
ATOM 20 N1 A B 913 57.237 87.869 76.588 1.00 20.33 N
ATOM 21 C2 A B 913 57.691 87.399 75.418 1.00 21.47 C
ATOM 22 N3 A B 913 57.592 87.926 74.204 1.00 20.43 N
ATOM 23 C4 A B 913 56.920 89.090 74.248 1.00 19.42 C
ATOM 24 P U B 914 52.880 88.585 69.601 1.00 31.77 P
ATOM 25 OP1 U B 914 52.294 88.361 68.262 1.00 32.67 O
ATOM 26 OP2 U B 914 52.180 89.482 70.565 1.00 30.70 O
ATOM 27 O5' U B 914 53.096 87.182 70.319 1.00 30.54 O
TER
ATOM 2 P C A1002 50.456 97.203 82.761 1.00 28.25 P
ATOM 3 OP1 C A1002 50.493 97.951 84.043 1.00 26.75 O
ATOM 4 OP2 C A1002 50.866 97.870 81.501 1.00 27.47 O
ATOM 5 O5' C A1002 51.346 95.894 82.889 1.00 25.71 O
ATOM 6 C5' C A1002 51.083 94.935 83.914 1.00 28.05 C
ATOM 7 C4' C A1002 52.049 93.795 83.806 1.00 28.48 C
ATOM 8 O4' C A1002 51.811 93.053 82.586 1.00 28.05 O
ATOM 9 C3' C A1002 53.496 94.213 83.646 1.00 29.49 C
ATOM 10 O3' C A1002 54.023 94.610 84.911 1.00 33.45 O
ATOM 11 C2' C A1002 54.128 92.929 83.114 1.00 28.32 C
ATOM 12 O2' C A1002 54.364 91.997 84.141 1.00 30.68 O
ATOM 13 C1' C A1002 52.998 92.366 82.243 1.00 27.76 C
ATOM 14 N1 C A1002 53.216 92.457 80.789 1.00 27.50 N
ATOM 15 C2 C A1002 54.037 91.504 80.189 1.00 28.59 C
ATOM 16 O2 C A1002 54.545 90.618 80.897 1.00 31.51 O
ATOM 17 N3 C A1002 54.256 91.565 78.854 1.00 26.75 N
ATOM 18 C4 C A1002 53.685 92.522 78.125 1.00 23.93 C
ATOM 19 N4 C A1002 53.926 92.527 76.810 1.00 23.74 N
ATOM 20 C5 C A1002 52.841 93.509 78.709 1.00 23.05 C
ATOM 21 C6 C A1002 52.635 93.440 80.034 1.00 25.87 C
ATOM 22 P C A1003 55.168 95.735 84.992 1.00 31.93 P
ATOM 23 OP1 C A1003 55.810 95.820 83.671 1.00 34.98 O
ATOM 24 OP2 C A1003 55.989 95.406 86.182 1.00 36.32 O
ATOM 25 O5' C A1003 54.417 97.115 85.275 1.00 30.35 O
TER
ATOM 1 O3' C B 912 55.500 94.780 71.228 1.00 31.76 O
ATOM 2 P A B 913 54.081 94.037 71.233 1.00 30.52 P
ATOM 3 OP1 A B 913 53.343 94.525 70.036 1.00 30.35 O
ATOM 4 OP2 A B 913 53.464 94.158 72.577 1.00 29.00 O
ATOM 5 O5' A B 913 54.488 92.521 70.992 1.00 27.00 O
ATOM 6 C5' A B 913 55.245 92.166 69.835 1.00 24.97 C
ATOM 7 C4' A B 913 55.948 90.853 70.049 1.00 27.12 C
ATOM 8 O4' A B 913 56.915 90.969 71.122 1.00 25.24 O
ATOM 9 C3' A B 913 55.077 89.689 70.484 1.00 27.32 C
ATOM 10 O3' A B 913 54.376 89.118 69.388 1.00 29.53 O
ATOM 11 C2' A B 913 56.122 88.748 71.044 1.00 25.11 C
ATOM 12 O2' A B 913 56.871 88.202 69.984 1.00 26.47 O
ATOM 13 C1' A B 913 57.019 89.729 71.797 1.00 22.94 C
ATOM 14 N9 A B 913 56.626 89.925 73.195 1.00 21.26 N
ATOM 15 C8 A B 913 55.917 90.965 73.735 1.00 21.16 C
ATOM 16 N7 A B 913 55.752 90.876 75.032 1.00 20.67 N
ATOM 17 C5 A B 913 56.390 89.695 75.368 1.00 18.31 C
ATOM 18 C6 A B 913 56.579 89.042 76.597 1.00 19.36 C
ATOM 19 N6 A B 913 56.156 89.522 77.765 1.00 18.65 N
ATOM 20 N1 A B 913 57.237 87.869 76.588 1.00 20.33 N
ATOM 21 C2 A B 913 57.691 87.399 75.418 1.00 21.47 C
ATOM 22 N3 A B 913 57.592 87.926 74.204 1.00 20.43 N
ATOM 23 C4 A B 913 56.920 89.090 74.248 1.00 19.42 C
ATOM 24 P U B 914 52.880 88.585 69.601 1.00 31.77 P
ATOM 25 OP1 U B 914 52.294 88.361 68.262 1.00 32.67 O
ATOM 26 OP2 U B 914 52.180 89.482 70.565 1.00 30.70 O
ATOM 27 O5' U B 914 53.096 87.182 70.319 1.00 30.54 O
TER
Atoms:
C2: (54.037,91.504,80.189)
OP1: (50.493,97.951,84.043)
OP2: (50.866,97.870,81.501)
C4: (53.685,92.522,78.125)
O5': (51.346,95.894,82.889)
C3': (53.496,94.213,83.646)
C1': (52.998,92.366,82.243)
O4': (51.811,93.053,82.586)
C5': (51.083,94.935,83.914)
P: (50.456,97.203,82.761)
O2: (54.545,90.618,80.897)
C4': (52.049,93.795,83.806)
C2': (54.128,92.929,83.114)
O2': (54.364,91.997,84.141)
N1: (53.216,92.457,80.789)
N3: (54.256,91.565,78.854)
N4: (53.926,92.527,76.810)
C6: (52.635,93.440,80.034)
C5: (52.841,93.509,78.709)
O3': (54.023,94.610,84.911)
OP1: (50.493,97.951,84.043)
OP2: (50.866,97.870,81.501)
C4: (53.685,92.522,78.125)
O5': (51.346,95.894,82.889)
C3': (53.496,94.213,83.646)
C1': (52.998,92.366,82.243)
O4': (51.811,93.053,82.586)
C5': (51.083,94.935,83.914)
P: (50.456,97.203,82.761)
O2: (54.545,90.618,80.897)
C4': (52.049,93.795,83.806)
C2': (54.128,92.929,83.114)
O2': (54.364,91.997,84.141)
N1: (53.216,92.457,80.789)
N3: (54.256,91.565,78.854)
N4: (53.926,92.527,76.810)
C6: (52.635,93.440,80.034)
C5: (52.841,93.509,78.709)
O3': (54.023,94.610,84.911)
OP1: (53.343,94.525,70.036)
OP2: (53.464,94.158,72.577)
C3': (55.077,89.689,70.484)
C1': (57.019,89.729,71.797)
C5': (55.245,92.166,69.835)
O4': (56.915,90.969,71.122)
C8: (55.917,90.965,73.735)
O2': (56.871,88.202,69.984)
C6: (56.579,89.042,76.597)
C5: (56.390,89.695,75.368)
C4: (56.920,89.090,74.248)
P: (54.081,94.037,71.233)
C4': (55.948,90.853,70.049)
C2': (56.122,88.748,71.044)
C2: (57.691,87.399,75.418)
N1: (57.237,87.869,76.588)
N3: (57.592,87.926,74.204)
N6: (56.156,89.522,77.765)
N7: (55.752,90.876,75.032)
N9: (56.626,89.925,73.195)
O5': (54.488,92.521,70.992)
O3': (54.376,89.118,69.388)
OP2: (53.464,94.158,72.577)
C3': (55.077,89.689,70.484)
C1': (57.019,89.729,71.797)
C5': (55.245,92.166,69.835)
O4': (56.915,90.969,71.122)
C8: (55.917,90.965,73.735)
O2': (56.871,88.202,69.984)
C6: (56.579,89.042,76.597)
C5: (56.390,89.695,75.368)
C4: (56.920,89.090,74.248)
P: (54.081,94.037,71.233)
C4': (55.948,90.853,70.049)
C2': (56.122,88.748,71.044)
C2: (57.691,87.399,75.418)
N1: (57.237,87.869,76.588)
N3: (57.592,87.926,74.204)
N6: (56.156,89.522,77.765)
N7: (55.752,90.876,75.032)
N9: (56.626,89.925,73.195)
O5': (54.488,92.521,70.992)
O3': (54.376,89.118,69.388)
Image (generated by PyMOL):