Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A17:A16
Extra
PDB:
ATOM 1 O3' U A 16 0.490 14.032 29.438 1.00131.31 O
ATOM 2 P U A 17 0.023 13.640 30.924 1.00130.35 P
ATOM 3 OP1 U A 17 -1.084 14.544 31.334 1.00129.86 O
ATOM 4 OP2 U A 17 1.240 13.559 31.765 1.00130.32 O
ATOM 5 O5' U A 17 -0.562 12.159 30.744 1.00129.06 O
ATOM 6 C5' U A 17 -1.448 11.841 29.668 1.00127.77 C
ATOM 7 C4' U A 17 -1.241 10.412 29.182 1.00127.28 C
ATOM 8 O4' U A 17 0.130 10.186 28.789 1.00127.23 O
ATOM 9 C3' U A 17 -1.452 9.328 30.217 1.00126.95 C
ATOM 10 O3' U A 17 -2.820 9.082 30.337 1.00127.14 O
ATOM 11 C2' U A 17 -0.703 8.134 29.659 1.00126.63 C
ATOM 12 O2' U A 17 -1.443 7.407 28.692 1.00126.45 O
ATOM 13 C1' U A 17 0.511 8.850 29.074 1.00126.29 C
ATOM 14 N1 U A 17 1.685 8.863 29.997 1.00124.80 N
ATOM 15 C2 U A 17 2.389 7.686 30.151 1.00125.07 C
ATOM 16 O2 U A 17 2.099 6.650 29.584 1.00125.39 O
ATOM 17 N3 U A 17 3.461 7.754 31.002 1.00125.19 N
ATOM 18 C4 U A 17 3.895 8.869 31.697 1.00125.43 C
ATOM 19 O4 U A 17 4.876 8.774 32.435 1.00126.62 O
ATOM 20 C5 U A 17 3.107 10.065 31.489 1.00124.50 C
ATOM 21 C6 U A 17 2.057 10.018 30.662 1.00123.74 C
ATOM 22 P U A 18 -3.556 9.709 31.607 1.00129.48 P
ATOM 23 OP1 U A 18 -4.351 10.887 31.163 1.00128.91 O
ATOM 24 OP2 U A 18 -2.546 9.909 32.687 1.00129.27 O
ATOM 25 O5' U A 18 -4.545 8.491 31.978 1.00127.82 O
TER
ATOM 1 O3' G B 15 6.734 15.506 29.865 1.00138.45 O
ATOM 2 P U B 16 5.642 14.972 30.897 1.00138.51 P
ATOM 3 OP1 U B 16 5.069 16.146 31.597 1.00137.85 O
ATOM 4 OP2 U B 16 6.254 13.855 31.657 1.00138.92 O
ATOM 5 O5' U B 16 4.501 14.376 29.956 1.00136.76 O
ATOM 6 C5' U B 16 3.425 15.222 29.589 1.00135.27 C
ATOM 7 C4' U B 16 2.653 14.607 28.446 1.00134.28 C
ATOM 8 O4' U B 16 3.562 13.967 27.506 1.00133.95 O
ATOM 9 C3' U B 16 1.696 13.504 28.865 1.00133.13 C
ATOM 10 O3' U B 16 0.490 14.032 29.438 1.00131.31 O
ATOM 11 C2' U B 16 1.512 12.829 27.508 1.00132.93 C
ATOM 12 O2' U B 16 0.687 13.545 26.608 1.00131.59 O
ATOM 13 C1' U B 16 2.960 12.783 27.004 1.00133.76 C
ATOM 14 N1 U B 16 3.760 11.550 27.423 1.00134.95 N
ATOM 15 C2 U B 16 3.291 10.274 27.118 1.00135.60 C
ATOM 16 O2 U B 16 2.250 10.044 26.525 1.00135.40 O
ATOM 17 N3 U B 16 4.086 9.232 27.538 1.00135.81 N
ATOM 18 C4 U B 16 5.287 9.315 28.219 1.00136.05 C
ATOM 19 O4 U B 16 5.888 8.287 28.529 1.00136.78 O
ATOM 20 C5 U B 16 5.718 10.661 28.503 1.00135.85 C
ATOM 21 C6 U B 16 4.961 11.695 28.103 1.00135.41 C
ATOM 22 P U B 17 0.023 13.640 30.924 1.00130.35 P
ATOM 23 OP1 U B 17 -1.084 14.544 31.334 1.00129.86 O
ATOM 24 OP2 U B 17 1.240 13.559 31.765 1.00130.32 O
ATOM 25 O5' U B 17 -0.562 12.159 30.744 1.00129.06 O
TER
ATOM 2 P U A 17 0.023 13.640 30.924 1.00130.35 P
ATOM 3 OP1 U A 17 -1.084 14.544 31.334 1.00129.86 O
ATOM 4 OP2 U A 17 1.240 13.559 31.765 1.00130.32 O
ATOM 5 O5' U A 17 -0.562 12.159 30.744 1.00129.06 O
ATOM 6 C5' U A 17 -1.448 11.841 29.668 1.00127.77 C
ATOM 7 C4' U A 17 -1.241 10.412 29.182 1.00127.28 C
ATOM 8 O4' U A 17 0.130 10.186 28.789 1.00127.23 O
ATOM 9 C3' U A 17 -1.452 9.328 30.217 1.00126.95 C
ATOM 10 O3' U A 17 -2.820 9.082 30.337 1.00127.14 O
ATOM 11 C2' U A 17 -0.703 8.134 29.659 1.00126.63 C
ATOM 12 O2' U A 17 -1.443 7.407 28.692 1.00126.45 O
ATOM 13 C1' U A 17 0.511 8.850 29.074 1.00126.29 C
ATOM 14 N1 U A 17 1.685 8.863 29.997 1.00124.80 N
ATOM 15 C2 U A 17 2.389 7.686 30.151 1.00125.07 C
ATOM 16 O2 U A 17 2.099 6.650 29.584 1.00125.39 O
ATOM 17 N3 U A 17 3.461 7.754 31.002 1.00125.19 N
ATOM 18 C4 U A 17 3.895 8.869 31.697 1.00125.43 C
ATOM 19 O4 U A 17 4.876 8.774 32.435 1.00126.62 O
ATOM 20 C5 U A 17 3.107 10.065 31.489 1.00124.50 C
ATOM 21 C6 U A 17 2.057 10.018 30.662 1.00123.74 C
ATOM 22 P U A 18 -3.556 9.709 31.607 1.00129.48 P
ATOM 23 OP1 U A 18 -4.351 10.887 31.163 1.00128.91 O
ATOM 24 OP2 U A 18 -2.546 9.909 32.687 1.00129.27 O
ATOM 25 O5' U A 18 -4.545 8.491 31.978 1.00127.82 O
TER
ATOM 1 O3' G B 15 6.734 15.506 29.865 1.00138.45 O
ATOM 2 P U B 16 5.642 14.972 30.897 1.00138.51 P
ATOM 3 OP1 U B 16 5.069 16.146 31.597 1.00137.85 O
ATOM 4 OP2 U B 16 6.254 13.855 31.657 1.00138.92 O
ATOM 5 O5' U B 16 4.501 14.376 29.956 1.00136.76 O
ATOM 6 C5' U B 16 3.425 15.222 29.589 1.00135.27 C
ATOM 7 C4' U B 16 2.653 14.607 28.446 1.00134.28 C
ATOM 8 O4' U B 16 3.562 13.967 27.506 1.00133.95 O
ATOM 9 C3' U B 16 1.696 13.504 28.865 1.00133.13 C
ATOM 10 O3' U B 16 0.490 14.032 29.438 1.00131.31 O
ATOM 11 C2' U B 16 1.512 12.829 27.508 1.00132.93 C
ATOM 12 O2' U B 16 0.687 13.545 26.608 1.00131.59 O
ATOM 13 C1' U B 16 2.960 12.783 27.004 1.00133.76 C
ATOM 14 N1 U B 16 3.760 11.550 27.423 1.00134.95 N
ATOM 15 C2 U B 16 3.291 10.274 27.118 1.00135.60 C
ATOM 16 O2 U B 16 2.250 10.044 26.525 1.00135.40 O
ATOM 17 N3 U B 16 4.086 9.232 27.538 1.00135.81 N
ATOM 18 C4 U B 16 5.287 9.315 28.219 1.00136.05 C
ATOM 19 O4 U B 16 5.888 8.287 28.529 1.00136.78 O
ATOM 20 C5 U B 16 5.718 10.661 28.503 1.00135.85 C
ATOM 21 C6 U B 16 4.961 11.695 28.103 1.00135.41 C
ATOM 22 P U B 17 0.023 13.640 30.924 1.00130.35 P
ATOM 23 OP1 U B 17 -1.084 14.544 31.334 1.00129.86 O
ATOM 24 OP2 U B 17 1.240 13.559 31.765 1.00130.32 O
ATOM 25 O5' U B 17 -0.562 12.159 30.744 1.00129.06 O
TER
Atoms:
C4: (3.895,8.869,31.697)
N3: (3.461,7.754,31.002)
OP1: (-1.084,14.544,31.334)
OP2: (1.240,13.559,31.765)
C2: (2.389,7.686,30.151)
C1': (0.511,8.850,29.074)
C3': (-1.452,9.328,30.217)
O5': (-0.562,12.159,30.744)
O4': (0.130,10.186,28.789)
C5': (-1.448,11.841,29.668)
P: (0.023,13.640,30.924)
C4': (-1.241,10.412,29.182)
C2': (-0.703,8.134,29.659)
O2': (-1.443,7.407,28.692)
N1: (1.685,8.863,29.997)
O4: (4.876,8.774,32.435)
O2: (2.099,6.650,29.584)
C6: (2.057,10.018,30.662)
C5: (3.107,10.065,31.489)
O3': (-2.820,9.082,30.337)
N3: (3.461,7.754,31.002)
OP1: (-1.084,14.544,31.334)
OP2: (1.240,13.559,31.765)
C2: (2.389,7.686,30.151)
C1': (0.511,8.850,29.074)
C3': (-1.452,9.328,30.217)
O5': (-0.562,12.159,30.744)
O4': (0.130,10.186,28.789)
C5': (-1.448,11.841,29.668)
P: (0.023,13.640,30.924)
C4': (-1.241,10.412,29.182)
C2': (-0.703,8.134,29.659)
O2': (-1.443,7.407,28.692)
N1: (1.685,8.863,29.997)
O4: (4.876,8.774,32.435)
O2: (2.099,6.650,29.584)
C6: (2.057,10.018,30.662)
C5: (3.107,10.065,31.489)
O3': (-2.820,9.082,30.337)
C4: (5.287,9.315,28.219)
N3: (4.086,9.232,27.538)
OP1: (5.069,16.146,31.597)
OP2: (6.254,13.855,31.657)
C2: (3.291,10.274,27.118)
C1': (2.960,12.783,27.004)
C3': (1.696,13.504,28.865)
O5': (4.501,14.376,29.956)
O4': (3.562,13.967,27.506)
C5': (3.425,15.222,29.589)
P: (5.642,14.972,30.897)
C4': (2.653,14.607,28.446)
C2': (1.512,12.829,27.508)
O2': (0.687,13.545,26.608)
N1: (3.760,11.550,27.423)
O4: (5.888,8.287,28.529)
O2: (2.250,10.044,26.525)
C6: (4.961,11.695,28.103)
C5: (5.718,10.661,28.503)
O3': (0.490,14.032,29.438)
N3: (4.086,9.232,27.538)
OP1: (5.069,16.146,31.597)
OP2: (6.254,13.855,31.657)
C2: (3.291,10.274,27.118)
C1': (2.960,12.783,27.004)
C3': (1.696,13.504,28.865)
O5': (4.501,14.376,29.956)
O4': (3.562,13.967,27.506)
C5': (3.425,15.222,29.589)
P: (5.642,14.972,30.897)
C4': (2.653,14.607,28.446)
C2': (1.512,12.829,27.508)
O2': (0.687,13.545,26.608)
N1: (3.760,11.550,27.423)
O4: (5.888,8.287,28.529)
O2: (2.250,10.044,26.525)
C6: (4.961,11.695,28.103)
C5: (5.718,10.661,28.503)
O3': (0.490,14.032,29.438)
Image (generated by PyMOL):