Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01316:01319
Extra
PDB:
ATOM 1 O3' A A1315 38.336 122.565 77.774 1.00 32.01 O
ATOM 2 P A A1316 39.213 122.763 76.446 1.00 34.42 P
ATOM 3 OP1 A A1316 38.974 124.163 76.005 1.00 30.92 O
ATOM 4 OP2 A A1316 38.980 121.642 75.506 1.00 33.58 O
ATOM 5 O5' A A1316 40.702 122.604 76.991 1.00 35.26 O
ATOM 6 C5' A A1316 41.187 123.486 78.006 1.00 34.53 C
ATOM 7 C4' A A1316 41.818 122.721 79.151 1.00 32.76 C
ATOM 8 O4' A A1316 40.875 121.768 79.701 1.00 33.24 O
ATOM 9 C3' A A1316 43.100 121.929 78.901 1.00 30.95 C
ATOM 10 O3' A A1316 43.936 122.194 80.020 1.00 30.62 O
ATOM 11 C2' A A1316 42.635 120.481 79.016 1.00 29.96 C
ATOM 12 O2' A A1316 43.634 119.614 79.499 1.00 32.91 O
ATOM 13 C1' A A1316 41.580 120.618 80.099 1.00 30.22 C
ATOM 14 N9 A A1316 40.624 119.523 80.230 1.00 30.81 N
ATOM 15 C8 A A1316 40.387 118.444 79.410 1.00 29.48 C
ATOM 16 N7 A A1316 39.377 117.703 79.796 1.00 30.80 N
ATOM 17 C5 A A1316 38.934 118.325 80.958 1.00 30.25 C
ATOM 18 C6 A A1316 37.877 118.047 81.841 1.00 29.59 C
ATOM 19 N6 A A1316 37.014 117.049 81.676 1.00 30.23 N
ATOM 20 N1 A A1316 37.726 118.854 82.912 1.00 31.59 N
ATOM 21 C2 A A1316 38.571 119.879 83.070 1.00 31.72 C
ATOM 22 N3 A A1316 39.589 120.253 82.302 1.00 31.31 N
ATOM 23 C4 A A1316 39.715 119.425 81.250 1.00 29.89 C
ATOM 24 P A A1317 45.029 123.364 79.940 1.00 28.33 P
ATOM 25 OP1 A A1317 45.376 123.674 81.333 1.00 29.12 O
ATOM 26 OP2 A A1317 44.534 124.449 79.059 1.00 28.52 O
ATOM 27 O5' A A1317 46.269 122.655 79.246 1.00 25.12 O
TER
ATOM 1 O3' U B1318 49.462 127.049 80.409 1.00 27.60 O
ATOM 2 P C B1319 49.110 127.988 79.160 1.00 26.00 P
ATOM 3 OP1 C B1319 50.097 129.079 79.080 1.00 28.85 O
ATOM 4 OP2 C B1319 47.670 128.313 79.288 1.00 21.36 O
ATOM 5 O5' C B1319 49.357 127.071 77.882 1.00 26.82 O
ATOM 6 C5' C B1319 48.480 125.987 77.554 1.00 25.67 C
ATOM 7 C4' C B1319 48.821 125.451 76.186 1.00 26.61 C
ATOM 8 O4' C B1319 47.981 124.307 75.873 1.00 26.44 O
ATOM 9 C3' C B1319 48.603 126.445 75.059 1.00 26.48 C
ATOM 10 O3' C B1319 49.777 127.224 74.863 1.00 26.03 O
ATOM 11 C2' C B1319 48.267 125.544 73.879 1.00 25.90 C
ATOM 12 O2' C B1319 49.421 124.959 73.313 1.00 25.26 O
ATOM 13 C1' C B1319 47.444 124.448 74.570 1.00 25.65 C
ATOM 14 N1 C B1319 45.991 124.717 74.704 1.00 25.31 N
ATOM 15 C2 C B1319 45.208 124.877 73.549 1.00 24.48 C
ATOM 16 O2 C B1319 45.743 124.779 72.442 1.00 27.97 O
ATOM 17 N3 C B1319 43.890 125.125 73.675 1.00 24.30 N
ATOM 18 C4 C B1319 43.338 125.203 74.890 1.00 27.08 C
ATOM 19 N4 C B1319 42.025 125.445 74.972 1.00 23.76 N
ATOM 20 C5 C B1319 44.106 125.038 76.079 1.00 25.80 C
ATOM 21 C6 C B1319 45.413 124.803 75.941 1.00 24.01 C
ATOM 22 P C B1320 49.666 128.817 74.675 1.00 25.68 P
ATOM 23 OP1 C B1320 51.056 129.335 74.718 1.00 25.07 O
ATOM 24 OP2 C B1320 48.653 129.371 75.601 1.00 22.28 O
ATOM 25 O5' C B1320 49.093 128.976 73.204 1.00 23.56 O
TER
ATOM 2 P A A1316 39.213 122.763 76.446 1.00 34.42 P
ATOM 3 OP1 A A1316 38.974 124.163 76.005 1.00 30.92 O
ATOM 4 OP2 A A1316 38.980 121.642 75.506 1.00 33.58 O
ATOM 5 O5' A A1316 40.702 122.604 76.991 1.00 35.26 O
ATOM 6 C5' A A1316 41.187 123.486 78.006 1.00 34.53 C
ATOM 7 C4' A A1316 41.818 122.721 79.151 1.00 32.76 C
ATOM 8 O4' A A1316 40.875 121.768 79.701 1.00 33.24 O
ATOM 9 C3' A A1316 43.100 121.929 78.901 1.00 30.95 C
ATOM 10 O3' A A1316 43.936 122.194 80.020 1.00 30.62 O
ATOM 11 C2' A A1316 42.635 120.481 79.016 1.00 29.96 C
ATOM 12 O2' A A1316 43.634 119.614 79.499 1.00 32.91 O
ATOM 13 C1' A A1316 41.580 120.618 80.099 1.00 30.22 C
ATOM 14 N9 A A1316 40.624 119.523 80.230 1.00 30.81 N
ATOM 15 C8 A A1316 40.387 118.444 79.410 1.00 29.48 C
ATOM 16 N7 A A1316 39.377 117.703 79.796 1.00 30.80 N
ATOM 17 C5 A A1316 38.934 118.325 80.958 1.00 30.25 C
ATOM 18 C6 A A1316 37.877 118.047 81.841 1.00 29.59 C
ATOM 19 N6 A A1316 37.014 117.049 81.676 1.00 30.23 N
ATOM 20 N1 A A1316 37.726 118.854 82.912 1.00 31.59 N
ATOM 21 C2 A A1316 38.571 119.879 83.070 1.00 31.72 C
ATOM 22 N3 A A1316 39.589 120.253 82.302 1.00 31.31 N
ATOM 23 C4 A A1316 39.715 119.425 81.250 1.00 29.89 C
ATOM 24 P A A1317 45.029 123.364 79.940 1.00 28.33 P
ATOM 25 OP1 A A1317 45.376 123.674 81.333 1.00 29.12 O
ATOM 26 OP2 A A1317 44.534 124.449 79.059 1.00 28.52 O
ATOM 27 O5' A A1317 46.269 122.655 79.246 1.00 25.12 O
TER
ATOM 1 O3' U B1318 49.462 127.049 80.409 1.00 27.60 O
ATOM 2 P C B1319 49.110 127.988 79.160 1.00 26.00 P
ATOM 3 OP1 C B1319 50.097 129.079 79.080 1.00 28.85 O
ATOM 4 OP2 C B1319 47.670 128.313 79.288 1.00 21.36 O
ATOM 5 O5' C B1319 49.357 127.071 77.882 1.00 26.82 O
ATOM 6 C5' C B1319 48.480 125.987 77.554 1.00 25.67 C
ATOM 7 C4' C B1319 48.821 125.451 76.186 1.00 26.61 C
ATOM 8 O4' C B1319 47.981 124.307 75.873 1.00 26.44 O
ATOM 9 C3' C B1319 48.603 126.445 75.059 1.00 26.48 C
ATOM 10 O3' C B1319 49.777 127.224 74.863 1.00 26.03 O
ATOM 11 C2' C B1319 48.267 125.544 73.879 1.00 25.90 C
ATOM 12 O2' C B1319 49.421 124.959 73.313 1.00 25.26 O
ATOM 13 C1' C B1319 47.444 124.448 74.570 1.00 25.65 C
ATOM 14 N1 C B1319 45.991 124.717 74.704 1.00 25.31 N
ATOM 15 C2 C B1319 45.208 124.877 73.549 1.00 24.48 C
ATOM 16 O2 C B1319 45.743 124.779 72.442 1.00 27.97 O
ATOM 17 N3 C B1319 43.890 125.125 73.675 1.00 24.30 N
ATOM 18 C4 C B1319 43.338 125.203 74.890 1.00 27.08 C
ATOM 19 N4 C B1319 42.025 125.445 74.972 1.00 23.76 N
ATOM 20 C5 C B1319 44.106 125.038 76.079 1.00 25.80 C
ATOM 21 C6 C B1319 45.413 124.803 75.941 1.00 24.01 C
ATOM 22 P C B1320 49.666 128.817 74.675 1.00 25.68 P
ATOM 23 OP1 C B1320 51.056 129.335 74.718 1.00 25.07 O
ATOM 24 OP2 C B1320 48.653 129.371 75.601 1.00 22.28 O
ATOM 25 O5' C B1320 49.093 128.976 73.204 1.00 23.56 O
TER
Atoms:
OP1: (38.974,124.163,76.005)
OP2: (38.980,121.642,75.506)
C3': (43.100,121.929,78.901)
C1': (41.580,120.618,80.099)
C5': (41.187,123.486,78.006)
O4': (40.875,121.768,79.701)
C8: (40.387,118.444,79.410)
O2': (43.634,119.614,79.499)
C6: (37.877,118.047,81.841)
C5: (38.934,118.325,80.958)
C4: (39.715,119.425,81.250)
P: (39.213,122.763,76.446)
C4': (41.818,122.721,79.151)
C2': (42.635,120.481,79.016)
C2: (38.571,119.879,83.070)
N1: (37.726,118.854,82.912)
N3: (39.589,120.253,82.302)
N6: (37.014,117.049,81.676)
N7: (39.377,117.703,79.796)
N9: (40.624,119.523,80.230)
O5': (40.702,122.604,76.991)
O3': (43.936,122.194,80.020)
OP2: (38.980,121.642,75.506)
C3': (43.100,121.929,78.901)
C1': (41.580,120.618,80.099)
C5': (41.187,123.486,78.006)
O4': (40.875,121.768,79.701)
C8: (40.387,118.444,79.410)
O2': (43.634,119.614,79.499)
C6: (37.877,118.047,81.841)
C5: (38.934,118.325,80.958)
C4: (39.715,119.425,81.250)
P: (39.213,122.763,76.446)
C4': (41.818,122.721,79.151)
C2': (42.635,120.481,79.016)
C2: (38.571,119.879,83.070)
N1: (37.726,118.854,82.912)
N3: (39.589,120.253,82.302)
N6: (37.014,117.049,81.676)
N7: (39.377,117.703,79.796)
N9: (40.624,119.523,80.230)
O5': (40.702,122.604,76.991)
O3': (43.936,122.194,80.020)
C2: (45.208,124.877,73.549)
OP1: (50.097,129.079,79.080)
OP2: (47.670,128.313,79.288)
C4: (43.338,125.203,74.890)
O5': (49.357,127.071,77.882)
C3': (48.603,126.445,75.059)
C1': (47.444,124.448,74.570)
O4': (47.981,124.307,75.873)
C5': (48.480,125.987,77.554)
P: (49.110,127.988,79.160)
O2: (45.743,124.779,72.442)
C4': (48.821,125.451,76.186)
C2': (48.267,125.544,73.879)
O2': (49.421,124.959,73.313)
N1: (45.991,124.717,74.704)
N3: (43.890,125.125,73.675)
N4: (42.025,125.445,74.972)
C6: (45.413,124.803,75.941)
C5: (44.106,125.038,76.079)
O3': (49.777,127.224,74.863)
OP1: (50.097,129.079,79.080)
OP2: (47.670,128.313,79.288)
C4: (43.338,125.203,74.890)
O5': (49.357,127.071,77.882)
C3': (48.603,126.445,75.059)
C1': (47.444,124.448,74.570)
O4': (47.981,124.307,75.873)
C5': (48.480,125.987,77.554)
P: (49.110,127.988,79.160)
O2: (45.743,124.779,72.442)
C4': (48.821,125.451,76.186)
C2': (48.267,125.544,73.879)
O2': (49.421,124.959,73.313)
N1: (45.991,124.717,74.704)
N3: (43.890,125.125,73.675)
N4: (42.025,125.445,74.972)
C6: (45.413,124.803,75.941)
C5: (44.106,125.038,76.079)
O3': (49.777,127.224,74.863)
Image (generated by PyMOL):