Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:01316:01319
Extra
PDB:
ATOM 1 O3' A A1315 38.335 122.731 77.714 1.00 35.75 O
ATOM 2 P A A1316 39.271 122.803 76.422 1.00 38.01 P
ATOM 3 OP1 A A1316 39.113 124.145 75.816 1.00 36.19 O
ATOM 4 OP2 A A1316 39.035 121.592 75.610 1.00 39.79 O
ATOM 5 O5' A A1316 40.730 122.682 77.037 1.00 39.13 O
ATOM 6 C5' A A1316 41.119 123.526 78.128 1.00 40.18 C
ATOM 7 C4' A A1316 41.803 122.722 79.215 1.00 39.44 C
ATOM 8 O4' A A1316 40.879 121.730 79.734 1.00 38.36 O
ATOM 9 C3' A A1316 43.076 121.953 78.852 1.00 37.07 C
ATOM 10 O3' A A1316 43.988 122.111 79.931 1.00 35.00 O
ATOM 11 C2' A A1316 42.600 120.501 78.840 1.00 36.87 C
ATOM 12 O2' A A1316 43.635 119.601 79.170 1.00 39.16 O
ATOM 13 C1' A A1316 41.581 120.538 79.969 1.00 36.94 C
ATOM 14 N9 A A1316 40.607 119.455 80.067 1.00 36.41 N
ATOM 15 C8 A A1316 40.342 118.409 79.222 1.00 36.50 C
ATOM 16 N7 A A1316 39.347 117.653 79.617 1.00 37.16 N
ATOM 17 C5 A A1316 38.938 118.237 80.808 1.00 38.32 C
ATOM 18 C6 A A1316 37.907 117.925 81.723 1.00 39.93 C
ATOM 19 N6 A A1316 37.054 116.908 81.573 1.00 40.14 N
ATOM 20 N1 A A1316 37.779 118.713 82.813 1.00 41.00 N
ATOM 21 C2 A A1316 38.626 119.738 82.967 1.00 39.65 C
ATOM 22 N3 A A1316 39.620 120.132 82.181 1.00 38.21 N
ATOM 23 C4 A A1316 39.720 119.333 81.105 1.00 37.34 C
ATOM 24 P A A1317 45.046 123.321 79.917 1.00 35.05 P
ATOM 25 OP1 A A1317 45.363 123.578 81.328 1.00 35.26 O
ATOM 26 OP2 A A1317 44.548 124.427 79.082 1.00 36.17 O
ATOM 27 O5' A A1317 46.326 122.683 79.234 1.00 31.63 O
TER
ATOM 1 O3' U B1318 49.522 127.058 80.458 1.00 34.59 O
ATOM 2 P C B1319 49.161 127.958 79.187 1.00 32.79 P
ATOM 3 OP1 C B1319 50.081 129.115 79.181 1.00 34.43 O
ATOM 4 OP2 C B1319 47.701 128.181 79.248 1.00 31.39 O
ATOM 5 O5' C B1319 49.501 127.038 77.934 1.00 31.37 O
ATOM 6 C5' C B1319 48.639 125.948 77.569 1.00 31.42 C
ATOM 7 C4' C B1319 48.940 125.476 76.163 1.00 30.99 C
ATOM 8 O4' C B1319 48.069 124.358 75.861 1.00 31.09 O
ATOM 9 C3' C B1319 48.688 126.492 75.059 1.00 30.63 C
ATOM 10 O3' C B1319 49.853 127.280 74.824 1.00 30.92 O
ATOM 11 C2' C B1319 48.321 125.613 73.872 1.00 30.00 C
ATOM 12 O2' C B1319 49.449 125.030 73.259 1.00 28.24 O
ATOM 13 C1' C B1319 47.523 124.502 74.561 1.00 30.45 C
ATOM 14 N1 C B1319 46.069 124.743 74.707 1.00 28.49 N
ATOM 15 C2 C B1319 45.258 124.847 73.566 1.00 26.67 C
ATOM 16 O2 C B1319 45.759 124.716 72.455 1.00 25.86 O
ATOM 17 N3 C B1319 43.947 125.086 73.714 1.00 29.32 N
ATOM 18 C4 C B1319 43.425 125.217 74.939 1.00 32.32 C
ATOM 19 N4 C B1319 42.119 125.476 75.045 1.00 34.46 N
ATOM 20 C5 C B1319 44.216 125.099 76.111 1.00 30.86 C
ATOM 21 C6 C B1319 45.519 124.868 75.952 1.00 29.34 C
ATOM 22 P C B1320 49.744 128.884 74.760 1.00 30.19 P
ATOM 23 OP1 C B1320 51.130 129.391 74.803 1.00 29.98 O
ATOM 24 OP2 C B1320 48.753 129.378 75.750 1.00 25.56 O
ATOM 25 O5' C B1320 49.174 129.139 73.301 1.00 30.33 O
TER
ATOM 2 P A A1316 39.271 122.803 76.422 1.00 38.01 P
ATOM 3 OP1 A A1316 39.113 124.145 75.816 1.00 36.19 O
ATOM 4 OP2 A A1316 39.035 121.592 75.610 1.00 39.79 O
ATOM 5 O5' A A1316 40.730 122.682 77.037 1.00 39.13 O
ATOM 6 C5' A A1316 41.119 123.526 78.128 1.00 40.18 C
ATOM 7 C4' A A1316 41.803 122.722 79.215 1.00 39.44 C
ATOM 8 O4' A A1316 40.879 121.730 79.734 1.00 38.36 O
ATOM 9 C3' A A1316 43.076 121.953 78.852 1.00 37.07 C
ATOM 10 O3' A A1316 43.988 122.111 79.931 1.00 35.00 O
ATOM 11 C2' A A1316 42.600 120.501 78.840 1.00 36.87 C
ATOM 12 O2' A A1316 43.635 119.601 79.170 1.00 39.16 O
ATOM 13 C1' A A1316 41.581 120.538 79.969 1.00 36.94 C
ATOM 14 N9 A A1316 40.607 119.455 80.067 1.00 36.41 N
ATOM 15 C8 A A1316 40.342 118.409 79.222 1.00 36.50 C
ATOM 16 N7 A A1316 39.347 117.653 79.617 1.00 37.16 N
ATOM 17 C5 A A1316 38.938 118.237 80.808 1.00 38.32 C
ATOM 18 C6 A A1316 37.907 117.925 81.723 1.00 39.93 C
ATOM 19 N6 A A1316 37.054 116.908 81.573 1.00 40.14 N
ATOM 20 N1 A A1316 37.779 118.713 82.813 1.00 41.00 N
ATOM 21 C2 A A1316 38.626 119.738 82.967 1.00 39.65 C
ATOM 22 N3 A A1316 39.620 120.132 82.181 1.00 38.21 N
ATOM 23 C4 A A1316 39.720 119.333 81.105 1.00 37.34 C
ATOM 24 P A A1317 45.046 123.321 79.917 1.00 35.05 P
ATOM 25 OP1 A A1317 45.363 123.578 81.328 1.00 35.26 O
ATOM 26 OP2 A A1317 44.548 124.427 79.082 1.00 36.17 O
ATOM 27 O5' A A1317 46.326 122.683 79.234 1.00 31.63 O
TER
ATOM 1 O3' U B1318 49.522 127.058 80.458 1.00 34.59 O
ATOM 2 P C B1319 49.161 127.958 79.187 1.00 32.79 P
ATOM 3 OP1 C B1319 50.081 129.115 79.181 1.00 34.43 O
ATOM 4 OP2 C B1319 47.701 128.181 79.248 1.00 31.39 O
ATOM 5 O5' C B1319 49.501 127.038 77.934 1.00 31.37 O
ATOM 6 C5' C B1319 48.639 125.948 77.569 1.00 31.42 C
ATOM 7 C4' C B1319 48.940 125.476 76.163 1.00 30.99 C
ATOM 8 O4' C B1319 48.069 124.358 75.861 1.00 31.09 O
ATOM 9 C3' C B1319 48.688 126.492 75.059 1.00 30.63 C
ATOM 10 O3' C B1319 49.853 127.280 74.824 1.00 30.92 O
ATOM 11 C2' C B1319 48.321 125.613 73.872 1.00 30.00 C
ATOM 12 O2' C B1319 49.449 125.030 73.259 1.00 28.24 O
ATOM 13 C1' C B1319 47.523 124.502 74.561 1.00 30.45 C
ATOM 14 N1 C B1319 46.069 124.743 74.707 1.00 28.49 N
ATOM 15 C2 C B1319 45.258 124.847 73.566 1.00 26.67 C
ATOM 16 O2 C B1319 45.759 124.716 72.455 1.00 25.86 O
ATOM 17 N3 C B1319 43.947 125.086 73.714 1.00 29.32 N
ATOM 18 C4 C B1319 43.425 125.217 74.939 1.00 32.32 C
ATOM 19 N4 C B1319 42.119 125.476 75.045 1.00 34.46 N
ATOM 20 C5 C B1319 44.216 125.099 76.111 1.00 30.86 C
ATOM 21 C6 C B1319 45.519 124.868 75.952 1.00 29.34 C
ATOM 22 P C B1320 49.744 128.884 74.760 1.00 30.19 P
ATOM 23 OP1 C B1320 51.130 129.391 74.803 1.00 29.98 O
ATOM 24 OP2 C B1320 48.753 129.378 75.750 1.00 25.56 O
ATOM 25 O5' C B1320 49.174 129.139 73.301 1.00 30.33 O
TER
Atoms:
OP1: (39.113,124.145,75.816)
OP2: (39.035,121.592,75.610)
C3': (43.076,121.953,78.852)
C1': (41.581,120.538,79.969)
C5': (41.119,123.526,78.128)
O4': (40.879,121.730,79.734)
C8: (40.342,118.409,79.222)
O2': (43.635,119.601,79.170)
C6: (37.907,117.925,81.723)
C5: (38.938,118.237,80.808)
C4: (39.720,119.333,81.105)
P: (39.271,122.803,76.422)
C4': (41.803,122.722,79.215)
C2': (42.600,120.501,78.840)
C2: (38.626,119.738,82.967)
N1: (37.779,118.713,82.813)
N3: (39.620,120.132,82.181)
N6: (37.054,116.908,81.573)
N7: (39.347,117.653,79.617)
N9: (40.607,119.455,80.067)
O5': (40.730,122.682,77.037)
O3': (43.988,122.111,79.931)
OP2: (39.035,121.592,75.610)
C3': (43.076,121.953,78.852)
C1': (41.581,120.538,79.969)
C5': (41.119,123.526,78.128)
O4': (40.879,121.730,79.734)
C8: (40.342,118.409,79.222)
O2': (43.635,119.601,79.170)
C6: (37.907,117.925,81.723)
C5: (38.938,118.237,80.808)
C4: (39.720,119.333,81.105)
P: (39.271,122.803,76.422)
C4': (41.803,122.722,79.215)
C2': (42.600,120.501,78.840)
C2: (38.626,119.738,82.967)
N1: (37.779,118.713,82.813)
N3: (39.620,120.132,82.181)
N6: (37.054,116.908,81.573)
N7: (39.347,117.653,79.617)
N9: (40.607,119.455,80.067)
O5': (40.730,122.682,77.037)
O3': (43.988,122.111,79.931)
C2: (45.258,124.847,73.566)
OP1: (50.081,129.115,79.181)
OP2: (47.701,128.181,79.248)
C4: (43.425,125.217,74.939)
O5': (49.501,127.038,77.934)
C3': (48.688,126.492,75.059)
C1': (47.523,124.502,74.561)
O4': (48.069,124.358,75.861)
C5': (48.639,125.948,77.569)
P: (49.161,127.958,79.187)
O2: (45.759,124.716,72.455)
C4': (48.940,125.476,76.163)
C2': (48.321,125.613,73.872)
O2': (49.449,125.030,73.259)
N1: (46.069,124.743,74.707)
N3: (43.947,125.086,73.714)
N4: (42.119,125.476,75.045)
C6: (45.519,124.868,75.952)
C5: (44.216,125.099,76.111)
O3': (49.853,127.280,74.824)
OP1: (50.081,129.115,79.181)
OP2: (47.701,128.181,79.248)
C4: (43.425,125.217,74.939)
O5': (49.501,127.038,77.934)
C3': (48.688,126.492,75.059)
C1': (47.523,124.502,74.561)
O4': (48.069,124.358,75.861)
C5': (48.639,125.948,77.569)
P: (49.161,127.958,79.187)
O2: (45.759,124.716,72.455)
C4': (48.940,125.476,76.163)
C2': (48.321,125.613,73.872)
O2': (49.449,125.030,73.259)
N1: (46.069,124.743,74.707)
N3: (43.947,125.086,73.714)
N4: (42.119,125.476,75.045)
C6: (45.519,124.868,75.952)
C5: (44.216,125.099,76.111)
O3': (49.853,127.280,74.824)
Image (generated by PyMOL):