Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0288:0287
Extra
PDB:
ATOM 1 O3' U A 287 40.359 133.504 26.260 1.00 56.12 O
ATOM 2 P U A 288 38.908 134.193 26.312 1.00 56.29 P
ATOM 3 OP1 U A 288 38.834 134.998 27.561 1.00 56.52 O
ATOM 4 OP2 U A 288 37.888 133.140 26.056 1.00 56.40 O
ATOM 5 O5' U A 288 38.901 135.180 25.058 1.00 57.84 O
ATOM 6 C5' U A 288 39.669 136.402 25.067 1.00 58.78 C
ATOM 7 C4' U A 288 39.480 137.162 23.771 1.00 59.67 C
ATOM 8 O4' U A 288 39.925 136.341 22.657 1.00 61.15 O
ATOM 9 C3' U A 288 38.057 137.541 23.388 1.00 58.99 C
ATOM 10 O3' U A 288 37.603 138.711 24.057 1.00 58.52 O
ATOM 11 C2' U A 288 38.192 137.768 21.890 1.00 59.89 C
ATOM 12 O2' U A 288 38.808 138.999 21.582 1.00 60.88 O
ATOM 13 C1' U A 288 39.152 136.644 21.507 1.00 60.67 C
ATOM 14 N1 U A 288 38.444 135.430 21.070 1.00 62.25 N
ATOM 15 C2 U A 288 38.016 135.384 19.756 1.00 63.00 C
ATOM 16 O2 U A 288 38.206 136.292 18.964 1.00 65.42 O
ATOM 17 N3 U A 288 37.352 134.238 19.402 1.00 63.05 N
ATOM 18 C4 U A 288 37.075 133.157 20.204 1.00 62.54 C
ATOM 19 O4 U A 288 36.436 132.209 19.741 1.00 62.59 O
ATOM 20 C5 U A 288 37.552 133.275 21.547 1.00 61.77 C
ATOM 21 C6 U A 288 38.204 134.378 21.926 1.00 61.44 C
ATOM 22 P C A 289 36.021 138.944 24.271 1.00 60.99 P
ATOM 23 OP1 C A 289 35.870 140.183 25.079 1.00 58.35 O
ATOM 24 OP2 C A 289 35.422 137.671 24.760 1.00 59.05 O
ATOM 25 O5' C A 289 35.457 139.222 22.802 1.00 60.40 O
TER
ATOM 1 O3' C B 286 41.605 127.391 25.806 1.00 61.47 O
ATOM 2 P U B 287 40.237 128.196 26.077 1.00 60.50 P
ATOM 3 OP1 U B 287 40.023 128.209 27.553 1.00 60.33 O
ATOM 4 OP2 U B 287 39.189 127.628 25.186 1.00 58.50 O
ATOM 5 O5' U B 287 40.548 129.684 25.591 1.00 59.60 O
ATOM 6 C5' U B 287 41.551 130.481 26.253 1.00 57.69 C
ATOM 7 C4' U B 287 41.858 131.738 25.463 1.00 56.86 C
ATOM 8 O4' U B 287 42.359 131.394 24.141 1.00 57.17 O
ATOM 9 C3' U B 287 40.696 132.671 25.165 1.00 55.32 C
ATOM 10 O3' U B 287 40.359 133.504 26.260 1.00 56.12 O
ATOM 11 C2' U B 287 41.246 133.487 24.011 1.00 55.66 C
ATOM 12 O2' U B 287 42.170 134.464 24.435 1.00 54.78 O
ATOM 13 C1' U B 287 41.980 132.408 23.216 1.00 57.28 C
ATOM 14 N1 U B 287 41.106 131.824 22.185 1.00 57.86 N
ATOM 15 C2 U B 287 40.866 132.577 21.042 1.00 57.45 C
ATOM 16 O2 U B 287 41.341 133.687 20.861 1.00 56.43 O
ATOM 17 N3 U B 287 40.039 131.985 20.122 1.00 58.66 N
ATOM 18 C4 U B 287 39.433 130.750 20.220 1.00 58.79 C
ATOM 19 O4 U B 287 38.712 130.357 19.303 1.00 59.32 O
ATOM 20 C5 U B 287 39.724 130.035 21.426 1.00 59.69 C
ATOM 21 C6 U B 287 40.531 130.580 22.343 1.00 58.66 C
ATOM 22 P U B 288 38.908 134.193 26.312 1.00 56.29 P
ATOM 23 OP1 U B 288 38.834 134.998 27.561 1.00 56.52 O
ATOM 24 OP2 U B 288 37.888 133.140 26.056 1.00 56.40 O
ATOM 25 O5' U B 288 38.901 135.180 25.058 1.00 57.84 O
TER
ATOM 2 P U A 288 38.908 134.193 26.312 1.00 56.29 P
ATOM 3 OP1 U A 288 38.834 134.998 27.561 1.00 56.52 O
ATOM 4 OP2 U A 288 37.888 133.140 26.056 1.00 56.40 O
ATOM 5 O5' U A 288 38.901 135.180 25.058 1.00 57.84 O
ATOM 6 C5' U A 288 39.669 136.402 25.067 1.00 58.78 C
ATOM 7 C4' U A 288 39.480 137.162 23.771 1.00 59.67 C
ATOM 8 O4' U A 288 39.925 136.341 22.657 1.00 61.15 O
ATOM 9 C3' U A 288 38.057 137.541 23.388 1.00 58.99 C
ATOM 10 O3' U A 288 37.603 138.711 24.057 1.00 58.52 O
ATOM 11 C2' U A 288 38.192 137.768 21.890 1.00 59.89 C
ATOM 12 O2' U A 288 38.808 138.999 21.582 1.00 60.88 O
ATOM 13 C1' U A 288 39.152 136.644 21.507 1.00 60.67 C
ATOM 14 N1 U A 288 38.444 135.430 21.070 1.00 62.25 N
ATOM 15 C2 U A 288 38.016 135.384 19.756 1.00 63.00 C
ATOM 16 O2 U A 288 38.206 136.292 18.964 1.00 65.42 O
ATOM 17 N3 U A 288 37.352 134.238 19.402 1.00 63.05 N
ATOM 18 C4 U A 288 37.075 133.157 20.204 1.00 62.54 C
ATOM 19 O4 U A 288 36.436 132.209 19.741 1.00 62.59 O
ATOM 20 C5 U A 288 37.552 133.275 21.547 1.00 61.77 C
ATOM 21 C6 U A 288 38.204 134.378 21.926 1.00 61.44 C
ATOM 22 P C A 289 36.021 138.944 24.271 1.00 60.99 P
ATOM 23 OP1 C A 289 35.870 140.183 25.079 1.00 58.35 O
ATOM 24 OP2 C A 289 35.422 137.671 24.760 1.00 59.05 O
ATOM 25 O5' C A 289 35.457 139.222 22.802 1.00 60.40 O
TER
ATOM 1 O3' C B 286 41.605 127.391 25.806 1.00 61.47 O
ATOM 2 P U B 287 40.237 128.196 26.077 1.00 60.50 P
ATOM 3 OP1 U B 287 40.023 128.209 27.553 1.00 60.33 O
ATOM 4 OP2 U B 287 39.189 127.628 25.186 1.00 58.50 O
ATOM 5 O5' U B 287 40.548 129.684 25.591 1.00 59.60 O
ATOM 6 C5' U B 287 41.551 130.481 26.253 1.00 57.69 C
ATOM 7 C4' U B 287 41.858 131.738 25.463 1.00 56.86 C
ATOM 8 O4' U B 287 42.359 131.394 24.141 1.00 57.17 O
ATOM 9 C3' U B 287 40.696 132.671 25.165 1.00 55.32 C
ATOM 10 O3' U B 287 40.359 133.504 26.260 1.00 56.12 O
ATOM 11 C2' U B 287 41.246 133.487 24.011 1.00 55.66 C
ATOM 12 O2' U B 287 42.170 134.464 24.435 1.00 54.78 O
ATOM 13 C1' U B 287 41.980 132.408 23.216 1.00 57.28 C
ATOM 14 N1 U B 287 41.106 131.824 22.185 1.00 57.86 N
ATOM 15 C2 U B 287 40.866 132.577 21.042 1.00 57.45 C
ATOM 16 O2 U B 287 41.341 133.687 20.861 1.00 56.43 O
ATOM 17 N3 U B 287 40.039 131.985 20.122 1.00 58.66 N
ATOM 18 C4 U B 287 39.433 130.750 20.220 1.00 58.79 C
ATOM 19 O4 U B 287 38.712 130.357 19.303 1.00 59.32 O
ATOM 20 C5 U B 287 39.724 130.035 21.426 1.00 59.69 C
ATOM 21 C6 U B 287 40.531 130.580 22.343 1.00 58.66 C
ATOM 22 P U B 288 38.908 134.193 26.312 1.00 56.29 P
ATOM 23 OP1 U B 288 38.834 134.998 27.561 1.00 56.52 O
ATOM 24 OP2 U B 288 37.888 133.140 26.056 1.00 56.40 O
ATOM 25 O5' U B 288 38.901 135.180 25.058 1.00 57.84 O
TER
Atoms:
C4: (37.075,133.157,20.204)
N3: (37.352,134.238,19.402)
OP1: (38.834,134.998,27.561)
OP2: (37.888,133.140,26.056)
C2: (38.016,135.384,19.756)
C1': (39.152,136.644,21.507)
C3': (38.057,137.541,23.388)
O5': (38.901,135.180,25.058)
O4': (39.925,136.341,22.657)
C5': (39.669,136.402,25.067)
P: (38.908,134.193,26.312)
C4': (39.480,137.162,23.771)
C2': (38.192,137.768,21.890)
O2': (38.808,138.999,21.582)
N1: (38.444,135.430,21.070)
O4: (36.436,132.209,19.741)
O2: (38.206,136.292,18.964)
C6: (38.204,134.378,21.926)
C5: (37.552,133.275,21.547)
O3': (37.603,138.711,24.057)
N3: (37.352,134.238,19.402)
OP1: (38.834,134.998,27.561)
OP2: (37.888,133.140,26.056)
C2: (38.016,135.384,19.756)
C1': (39.152,136.644,21.507)
C3': (38.057,137.541,23.388)
O5': (38.901,135.180,25.058)
O4': (39.925,136.341,22.657)
C5': (39.669,136.402,25.067)
P: (38.908,134.193,26.312)
C4': (39.480,137.162,23.771)
C2': (38.192,137.768,21.890)
O2': (38.808,138.999,21.582)
N1: (38.444,135.430,21.070)
O4: (36.436,132.209,19.741)
O2: (38.206,136.292,18.964)
C6: (38.204,134.378,21.926)
C5: (37.552,133.275,21.547)
O3': (37.603,138.711,24.057)
C4: (39.433,130.750,20.220)
N3: (40.039,131.985,20.122)
OP1: (40.023,128.209,27.553)
OP2: (39.189,127.628,25.186)
C2: (40.866,132.577,21.042)
C1': (41.980,132.408,23.216)
C3': (40.696,132.671,25.165)
O5': (40.548,129.684,25.591)
O4': (42.359,131.394,24.141)
C5': (41.551,130.481,26.253)
P: (40.237,128.196,26.077)
C4': (41.858,131.738,25.463)
C2': (41.246,133.487,24.011)
O2': (42.170,134.464,24.435)
N1: (41.106,131.824,22.185)
O4: (38.712,130.357,19.303)
O2: (41.341,133.687,20.861)
C6: (40.531,130.580,22.343)
C5: (39.724,130.035,21.426)
O3': (40.359,133.504,26.260)
N3: (40.039,131.985,20.122)
OP1: (40.023,128.209,27.553)
OP2: (39.189,127.628,25.186)
C2: (40.866,132.577,21.042)
C1': (41.980,132.408,23.216)
C3': (40.696,132.671,25.165)
O5': (40.548,129.684,25.591)
O4': (42.359,131.394,24.141)
C5': (41.551,130.481,26.253)
P: (40.237,128.196,26.077)
C4': (41.858,131.738,25.463)
C2': (41.246,133.487,24.011)
O2': (42.170,134.464,24.435)
N1: (41.106,131.824,22.185)
O4: (38.712,130.357,19.303)
O2: (41.341,133.687,20.861)
C6: (40.531,130.580,22.343)
C5: (39.724,130.035,21.426)
O3': (40.359,133.504,26.260)
Image (generated by PyMOL):