Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3KNI:A2122:A2123
Extra
PDB:
ATOM 1 O3' G A2121 36.328 -6.931 -61.567 1.00118.26 O
ATOM 2 P A A2122 35.461 -5.845 -62.399 1.00125.82 P
ATOM 3 OP1 A A2122 35.674 -4.511 -61.774 1.00119.54 O
ATOM 4 OP2 A A2122 34.075 -6.369 -62.540 1.00131.89 O
ATOM 5 O5' A A2122 36.124 -5.756 -63.855 1.00110.19 O
ATOM 6 C5' A A2122 36.574 -6.911 -64.575 1.00107.52 C
ATOM 7 C4' A A2122 38.036 -6.746 -64.930 1.00104.22 C
ATOM 8 O4' A A2122 38.763 -6.535 -63.695 1.00103.11 O
ATOM 9 C3' A A2122 38.755 -7.909 -65.608 1.00104.15 C
ATOM 10 O3' A A2122 38.655 -7.851 -67.034 1.00114.69 O
ATOM 11 C2' A A2122 40.204 -7.696 -65.192 1.00 95.59 C
ATOM 12 O2' A A2122 40.847 -6.765 -66.033 1.00 96.33 O
ATOM 13 C1' A A2122 40.058 -7.089 -63.797 1.00 96.08 C
ATOM 14 N9 A A2122 40.281 -8.010 -62.673 1.00 95.55 N
ATOM 15 C8 A A2122 40.528 -9.366 -62.727 1.00 98.31 C
ATOM 16 N7 A A2122 40.766 -9.909 -61.556 1.00 96.67 N
ATOM 17 C5 A A2122 40.656 -8.848 -60.665 1.00 92.56 C
ATOM 18 C6 A A2122 40.812 -8.763 -59.268 1.00 88.04 C
ATOM 19 N6 A A2122 41.162 -9.800 -58.499 1.00 80.95 N
ATOM 20 N1 A A2122 40.607 -7.560 -58.683 1.00 89.93 N
ATOM 21 C2 A A2122 40.286 -6.516 -59.456 1.00 90.38 C
ATOM 22 N3 A A2122 40.131 -6.463 -60.776 1.00 89.75 N
ATOM 23 C4 A A2122 40.333 -7.676 -61.333 1.00 92.71 C
ATOM 24 P U A2123 39.493 -8.897 -67.945 1.00115.61 P
ATOM 25 OP1 U A2123 38.643 -9.312 -69.090 1.00110.38 O
ATOM 26 OP2 U A2123 40.072 -9.938 -67.053 1.00110.31 O
ATOM 27 O5' U A2123 40.718 -8.051 -68.526 1.00107.56 O
TER
ATOM 1 O3' A B2122 38.655 -7.851 -67.034 1.00114.69 O
ATOM 2 P U B2123 39.493 -8.897 -67.945 1.00115.61 P
ATOM 3 OP1 U B2123 38.643 -9.312 -69.090 1.00110.38 O
ATOM 4 OP2 U B2123 40.072 -9.938 -67.053 1.00110.31 O
ATOM 5 O5' U B2123 40.718 -8.051 -68.526 1.00107.56 O
ATOM 6 C5' U B2123 41.848 -8.717 -69.098 1.00105.93 C
ATOM 7 C4' U B2123 42.017 -8.323 -70.546 1.00105.46 C
ATOM 8 O4' U B2123 40.712 -8.353 -71.178 1.00115.34 O
ATOM 9 C3' U B2123 42.510 -6.904 -70.769 1.00104.80 C
ATOM 10 O3' U B2123 43.924 -6.798 -70.777 1.00105.43 O
ATOM 11 C2' U B2123 41.913 -6.523 -72.116 1.00109.78 C
ATOM 12 O2' U B2123 42.677 -6.943 -73.230 1.00104.69 O
ATOM 13 C1' U B2123 40.579 -7.260 -72.072 1.00115.35 C
ATOM 14 N1 U B2123 39.487 -6.399 -71.596 1.00122.85 N
ATOM 15 C2 U B2123 38.571 -5.946 -72.532 1.00126.17 C
ATOM 16 O2 U B2123 38.652 -6.217 -73.724 1.00126.73 O
ATOM 17 N3 U B2123 37.559 -5.166 -72.026 1.00127.77 N
ATOM 18 C4 U B2123 37.364 -4.796 -70.704 1.00124.88 C
ATOM 19 O4 U B2123 36.329 -4.195 -70.388 1.00114.96 O
ATOM 20 C5 U B2123 38.362 -5.281 -69.796 1.00121.91 C
ATOM 21 C6 U B2123 39.363 -6.047 -70.259 1.00120.20 C
ATOM 22 P G B2124 44.596 -5.349 -70.614 1.00106.05 P
ATOM 23 OP1 G B2124 44.552 -4.684 -71.943 1.00103.90 O
ATOM 24 OP2 G B2124 45.896 -5.475 -69.894 1.00 89.36 O
ATOM 25 O5' G B2124 43.548 -4.587 -69.690 1.00 97.14 O
TER
ATOM 2 P A A2122 35.461 -5.845 -62.399 1.00125.82 P
ATOM 3 OP1 A A2122 35.674 -4.511 -61.774 1.00119.54 O
ATOM 4 OP2 A A2122 34.075 -6.369 -62.540 1.00131.89 O
ATOM 5 O5' A A2122 36.124 -5.756 -63.855 1.00110.19 O
ATOM 6 C5' A A2122 36.574 -6.911 -64.575 1.00107.52 C
ATOM 7 C4' A A2122 38.036 -6.746 -64.930 1.00104.22 C
ATOM 8 O4' A A2122 38.763 -6.535 -63.695 1.00103.11 O
ATOM 9 C3' A A2122 38.755 -7.909 -65.608 1.00104.15 C
ATOM 10 O3' A A2122 38.655 -7.851 -67.034 1.00114.69 O
ATOM 11 C2' A A2122 40.204 -7.696 -65.192 1.00 95.59 C
ATOM 12 O2' A A2122 40.847 -6.765 -66.033 1.00 96.33 O
ATOM 13 C1' A A2122 40.058 -7.089 -63.797 1.00 96.08 C
ATOM 14 N9 A A2122 40.281 -8.010 -62.673 1.00 95.55 N
ATOM 15 C8 A A2122 40.528 -9.366 -62.727 1.00 98.31 C
ATOM 16 N7 A A2122 40.766 -9.909 -61.556 1.00 96.67 N
ATOM 17 C5 A A2122 40.656 -8.848 -60.665 1.00 92.56 C
ATOM 18 C6 A A2122 40.812 -8.763 -59.268 1.00 88.04 C
ATOM 19 N6 A A2122 41.162 -9.800 -58.499 1.00 80.95 N
ATOM 20 N1 A A2122 40.607 -7.560 -58.683 1.00 89.93 N
ATOM 21 C2 A A2122 40.286 -6.516 -59.456 1.00 90.38 C
ATOM 22 N3 A A2122 40.131 -6.463 -60.776 1.00 89.75 N
ATOM 23 C4 A A2122 40.333 -7.676 -61.333 1.00 92.71 C
ATOM 24 P U A2123 39.493 -8.897 -67.945 1.00115.61 P
ATOM 25 OP1 U A2123 38.643 -9.312 -69.090 1.00110.38 O
ATOM 26 OP2 U A2123 40.072 -9.938 -67.053 1.00110.31 O
ATOM 27 O5' U A2123 40.718 -8.051 -68.526 1.00107.56 O
TER
ATOM 1 O3' A B2122 38.655 -7.851 -67.034 1.00114.69 O
ATOM 2 P U B2123 39.493 -8.897 -67.945 1.00115.61 P
ATOM 3 OP1 U B2123 38.643 -9.312 -69.090 1.00110.38 O
ATOM 4 OP2 U B2123 40.072 -9.938 -67.053 1.00110.31 O
ATOM 5 O5' U B2123 40.718 -8.051 -68.526 1.00107.56 O
ATOM 6 C5' U B2123 41.848 -8.717 -69.098 1.00105.93 C
ATOM 7 C4' U B2123 42.017 -8.323 -70.546 1.00105.46 C
ATOM 8 O4' U B2123 40.712 -8.353 -71.178 1.00115.34 O
ATOM 9 C3' U B2123 42.510 -6.904 -70.769 1.00104.80 C
ATOM 10 O3' U B2123 43.924 -6.798 -70.777 1.00105.43 O
ATOM 11 C2' U B2123 41.913 -6.523 -72.116 1.00109.78 C
ATOM 12 O2' U B2123 42.677 -6.943 -73.230 1.00104.69 O
ATOM 13 C1' U B2123 40.579 -7.260 -72.072 1.00115.35 C
ATOM 14 N1 U B2123 39.487 -6.399 -71.596 1.00122.85 N
ATOM 15 C2 U B2123 38.571 -5.946 -72.532 1.00126.17 C
ATOM 16 O2 U B2123 38.652 -6.217 -73.724 1.00126.73 O
ATOM 17 N3 U B2123 37.559 -5.166 -72.026 1.00127.77 N
ATOM 18 C4 U B2123 37.364 -4.796 -70.704 1.00124.88 C
ATOM 19 O4 U B2123 36.329 -4.195 -70.388 1.00114.96 O
ATOM 20 C5 U B2123 38.362 -5.281 -69.796 1.00121.91 C
ATOM 21 C6 U B2123 39.363 -6.047 -70.259 1.00120.20 C
ATOM 22 P G B2124 44.596 -5.349 -70.614 1.00106.05 P
ATOM 23 OP1 G B2124 44.552 -4.684 -71.943 1.00103.90 O
ATOM 24 OP2 G B2124 45.896 -5.475 -69.894 1.00 89.36 O
ATOM 25 O5' G B2124 43.548 -4.587 -69.690 1.00 97.14 O
TER
Atoms:
OP1: (35.674,-4.511,-61.774)
OP2: (34.075,-6.369,-62.540)
C3': (38.755,-7.909,-65.608)
C1': (40.058,-7.089,-63.797)
C5': (36.574,-6.911,-64.575)
O4': (38.763,-6.535,-63.695)
C8: (40.528,-9.366,-62.727)
O2': (40.847,-6.765,-66.033)
C6: (40.812,-8.763,-59.268)
C5: (40.656,-8.848,-60.665)
C4: (40.333,-7.676,-61.333)
P: (35.461,-5.845,-62.399)
C4': (38.036,-6.746,-64.930)
C2': (40.204,-7.696,-65.192)
C2: (40.286,-6.516,-59.456)
N1: (40.607,-7.560,-58.683)
N3: (40.131,-6.463,-60.776)
N6: (41.162,-9.800,-58.499)
N7: (40.766,-9.909,-61.556)
N9: (40.281,-8.010,-62.673)
O5': (36.124,-5.756,-63.855)
O3': (38.655,-7.851,-67.034)
OP2: (34.075,-6.369,-62.540)
C3': (38.755,-7.909,-65.608)
C1': (40.058,-7.089,-63.797)
C5': (36.574,-6.911,-64.575)
O4': (38.763,-6.535,-63.695)
C8: (40.528,-9.366,-62.727)
O2': (40.847,-6.765,-66.033)
C6: (40.812,-8.763,-59.268)
C5: (40.656,-8.848,-60.665)
C4: (40.333,-7.676,-61.333)
P: (35.461,-5.845,-62.399)
C4': (38.036,-6.746,-64.930)
C2': (40.204,-7.696,-65.192)
C2: (40.286,-6.516,-59.456)
N1: (40.607,-7.560,-58.683)
N3: (40.131,-6.463,-60.776)
N6: (41.162,-9.800,-58.499)
N7: (40.766,-9.909,-61.556)
N9: (40.281,-8.010,-62.673)
O5': (36.124,-5.756,-63.855)
O3': (38.655,-7.851,-67.034)
C4: (37.364,-4.796,-70.704)
N3: (37.559,-5.166,-72.026)
OP1: (38.643,-9.312,-69.090)
OP2: (40.072,-9.938,-67.053)
C2: (38.571,-5.946,-72.532)
C1': (40.579,-7.260,-72.072)
C3': (42.510,-6.904,-70.769)
O5': (40.718,-8.051,-68.526)
O4': (40.712,-8.353,-71.178)
C5': (41.848,-8.717,-69.098)
P: (39.493,-8.897,-67.945)
C4': (42.017,-8.323,-70.546)
C2': (41.913,-6.523,-72.116)
O2': (42.677,-6.943,-73.230)
N1: (39.487,-6.399,-71.596)
O4: (36.329,-4.195,-70.388)
O2: (38.652,-6.217,-73.724)
C6: (39.363,-6.047,-70.259)
C5: (38.362,-5.281,-69.796)
O3': (43.924,-6.798,-70.777)
N3: (37.559,-5.166,-72.026)
OP1: (38.643,-9.312,-69.090)
OP2: (40.072,-9.938,-67.053)
C2: (38.571,-5.946,-72.532)
C1': (40.579,-7.260,-72.072)
C3': (42.510,-6.904,-70.769)
O5': (40.718,-8.051,-68.526)
O4': (40.712,-8.353,-71.178)
C5': (41.848,-8.717,-69.098)
P: (39.493,-8.897,-67.945)
C4': (42.017,-8.323,-70.546)
C2': (41.913,-6.523,-72.116)
O2': (42.677,-6.943,-73.230)
N1: (39.487,-6.399,-71.596)
O4: (36.329,-4.195,-70.388)
O2: (38.652,-6.217,-73.724)
C6: (39.363,-6.047,-70.259)
C5: (38.362,-5.281,-69.796)
O3': (43.924,-6.798,-70.777)
Image (generated by PyMOL):