Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A4:A3
Extra
PDB:
ATOM 1 O3' U A 3 8.029 -18.593 -4.352 1.00 75.05 O
ATOM 2 P U A 4 9.036 -19.095 -3.219 1.00 76.94 P
ATOM 3 OP1 U A 4 9.916 -20.107 -3.865 1.00 78.45 O
ATOM 4 OP2 U A 4 8.295 -19.365 -1.952 1.00 76.68 O
ATOM 5 O5' U A 4 9.888 -17.765 -2.990 1.00 73.50 O
ATOM 6 C5' U A 4 10.842 -17.409 -3.948 1.00 71.11 C
ATOM 7 C4' U A 4 11.450 -16.101 -3.500 1.00 71.81 C
ATOM 8 O4' U A 4 10.386 -15.182 -3.159 1.00 70.12 O
ATOM 9 C3' U A 4 12.255 -16.128 -2.211 1.00 72.19 C
ATOM 10 O3' U A 4 13.551 -16.647 -2.393 1.00 72.97 O
ATOM 11 C2' U A 4 12.290 -14.647 -1.839 1.00 71.20 C
ATOM 12 O2' U A 4 13.284 -13.923 -2.559 1.00 71.70 O
ATOM 13 C1' U A 4 10.859 -14.244 -2.212 1.00 67.89 C
ATOM 14 N1 U A 4 9.846 -14.218 -1.098 1.00 63.53 N
ATOM 15 C2 U A 4 9.718 -13.043 -0.393 1.00 63.59 C
ATOM 16 O2 U A 4 10.395 -12.041 -0.600 1.00 64.16 O
ATOM 17 N3 U A 4 8.771 -13.074 0.584 1.00 61.60 N
ATOM 18 C4 U A 4 7.937 -14.093 0.947 1.00 62.91 C
ATOM 19 O4 U A 4 7.138 -13.886 1.880 1.00 66.92 O
ATOM 20 C5 U A 4 8.113 -15.286 0.171 1.00 62.64 C
ATOM 21 C6 U A 4 9.041 -15.305 -0.798 1.00 62.31 C
ATOM 22 P A A 5 14.326 -17.151 -1.090 1.00 74.53 P
ATOM 23 OP1 A A 5 15.593 -17.803 -1.529 1.00 76.29 O
ATOM 24 OP2 A A 5 13.385 -17.971 -0.293 1.00 72.51 O
ATOM 25 O5' A A 5 14.691 -15.774 -0.364 1.00 70.16 O
TER
ATOM 1 O3' C B 2 2.260 -19.146 -2.469 1.00 78.48 O
ATOM 2 P U B 3 3.701 -19.251 -1.805 1.00 79.50 P
ATOM 3 OP1 U B 3 4.188 -20.618 -2.104 1.00 80.35 O
ATOM 4 OP2 U B 3 3.592 -18.737 -0.425 1.00 77.33 O
ATOM 5 O5' U B 3 4.617 -18.264 -2.660 1.00 73.40 O
ATOM 6 C5' U B 3 5.005 -18.737 -3.919 1.00 71.90 C
ATOM 7 C4' U B 3 5.823 -17.721 -4.668 1.00 70.97 C
ATOM 8 O4' U B 3 5.219 -16.427 -4.639 1.00 68.75 O
ATOM 9 C3' U B 3 7.156 -17.506 -4.001 1.00 72.60 C
ATOM 10 O3' U B 3 8.029 -18.593 -4.352 1.00 75.05 O
ATOM 11 C2' U B 3 7.566 -16.115 -4.491 1.00 70.31 C
ATOM 12 O2' U B 3 8.037 -16.044 -5.821 1.00 69.45 O
ATOM 13 C1' U B 3 6.217 -15.438 -4.391 1.00 68.58 C
ATOM 14 N1 U B 3 5.945 -14.692 -3.096 1.00 65.09 N
ATOM 15 C2 U B 3 6.486 -13.431 -2.967 1.00 65.29 C
ATOM 16 O2 U B 3 7.197 -12.930 -3.817 1.00 65.39 O
ATOM 17 N3 U B 3 6.184 -12.771 -1.808 1.00 64.36 N
ATOM 18 C4 U B 3 5.394 -13.217 -0.775 1.00 65.16 C
ATOM 19 O4 U B 3 5.223 -12.498 0.223 1.00 66.51 O
ATOM 20 C5 U B 3 4.850 -14.538 -0.971 1.00 63.21 C
ATOM 21 C6 U B 3 5.140 -15.204 -2.096 1.00 63.24 C
ATOM 22 P U B 4 9.036 -19.095 -3.219 1.00 76.94 P
ATOM 23 OP1 U B 4 9.916 -20.107 -3.865 1.00 78.45 O
ATOM 24 OP2 U B 4 8.295 -19.365 -1.952 1.00 76.68 O
ATOM 25 O5' U B 4 9.888 -17.765 -2.990 1.00 73.50 O
TER
ATOM 2 P U A 4 9.036 -19.095 -3.219 1.00 76.94 P
ATOM 3 OP1 U A 4 9.916 -20.107 -3.865 1.00 78.45 O
ATOM 4 OP2 U A 4 8.295 -19.365 -1.952 1.00 76.68 O
ATOM 5 O5' U A 4 9.888 -17.765 -2.990 1.00 73.50 O
ATOM 6 C5' U A 4 10.842 -17.409 -3.948 1.00 71.11 C
ATOM 7 C4' U A 4 11.450 -16.101 -3.500 1.00 71.81 C
ATOM 8 O4' U A 4 10.386 -15.182 -3.159 1.00 70.12 O
ATOM 9 C3' U A 4 12.255 -16.128 -2.211 1.00 72.19 C
ATOM 10 O3' U A 4 13.551 -16.647 -2.393 1.00 72.97 O
ATOM 11 C2' U A 4 12.290 -14.647 -1.839 1.00 71.20 C
ATOM 12 O2' U A 4 13.284 -13.923 -2.559 1.00 71.70 O
ATOM 13 C1' U A 4 10.859 -14.244 -2.212 1.00 67.89 C
ATOM 14 N1 U A 4 9.846 -14.218 -1.098 1.00 63.53 N
ATOM 15 C2 U A 4 9.718 -13.043 -0.393 1.00 63.59 C
ATOM 16 O2 U A 4 10.395 -12.041 -0.600 1.00 64.16 O
ATOM 17 N3 U A 4 8.771 -13.074 0.584 1.00 61.60 N
ATOM 18 C4 U A 4 7.937 -14.093 0.947 1.00 62.91 C
ATOM 19 O4 U A 4 7.138 -13.886 1.880 1.00 66.92 O
ATOM 20 C5 U A 4 8.113 -15.286 0.171 1.00 62.64 C
ATOM 21 C6 U A 4 9.041 -15.305 -0.798 1.00 62.31 C
ATOM 22 P A A 5 14.326 -17.151 -1.090 1.00 74.53 P
ATOM 23 OP1 A A 5 15.593 -17.803 -1.529 1.00 76.29 O
ATOM 24 OP2 A A 5 13.385 -17.971 -0.293 1.00 72.51 O
ATOM 25 O5' A A 5 14.691 -15.774 -0.364 1.00 70.16 O
TER
ATOM 1 O3' C B 2 2.260 -19.146 -2.469 1.00 78.48 O
ATOM 2 P U B 3 3.701 -19.251 -1.805 1.00 79.50 P
ATOM 3 OP1 U B 3 4.188 -20.618 -2.104 1.00 80.35 O
ATOM 4 OP2 U B 3 3.592 -18.737 -0.425 1.00 77.33 O
ATOM 5 O5' U B 3 4.617 -18.264 -2.660 1.00 73.40 O
ATOM 6 C5' U B 3 5.005 -18.737 -3.919 1.00 71.90 C
ATOM 7 C4' U B 3 5.823 -17.721 -4.668 1.00 70.97 C
ATOM 8 O4' U B 3 5.219 -16.427 -4.639 1.00 68.75 O
ATOM 9 C3' U B 3 7.156 -17.506 -4.001 1.00 72.60 C
ATOM 10 O3' U B 3 8.029 -18.593 -4.352 1.00 75.05 O
ATOM 11 C2' U B 3 7.566 -16.115 -4.491 1.00 70.31 C
ATOM 12 O2' U B 3 8.037 -16.044 -5.821 1.00 69.45 O
ATOM 13 C1' U B 3 6.217 -15.438 -4.391 1.00 68.58 C
ATOM 14 N1 U B 3 5.945 -14.692 -3.096 1.00 65.09 N
ATOM 15 C2 U B 3 6.486 -13.431 -2.967 1.00 65.29 C
ATOM 16 O2 U B 3 7.197 -12.930 -3.817 1.00 65.39 O
ATOM 17 N3 U B 3 6.184 -12.771 -1.808 1.00 64.36 N
ATOM 18 C4 U B 3 5.394 -13.217 -0.775 1.00 65.16 C
ATOM 19 O4 U B 3 5.223 -12.498 0.223 1.00 66.51 O
ATOM 20 C5 U B 3 4.850 -14.538 -0.971 1.00 63.21 C
ATOM 21 C6 U B 3 5.140 -15.204 -2.096 1.00 63.24 C
ATOM 22 P U B 4 9.036 -19.095 -3.219 1.00 76.94 P
ATOM 23 OP1 U B 4 9.916 -20.107 -3.865 1.00 78.45 O
ATOM 24 OP2 U B 4 8.295 -19.365 -1.952 1.00 76.68 O
ATOM 25 O5' U B 4 9.888 -17.765 -2.990 1.00 73.50 O
TER
Atoms:
C4: (7.937,-14.093,0.947)
N3: (8.771,-13.074,0.584)
OP1: (9.916,-20.107,-3.865)
OP2: (8.295,-19.365,-1.952)
C2: (9.718,-13.043,-0.393)
C1': (10.859,-14.244,-2.212)
C3': (12.255,-16.128,-2.211)
O5': (9.888,-17.765,-2.990)
O4': (10.386,-15.182,-3.159)
C5': (10.842,-17.409,-3.948)
P: (9.036,-19.095,-3.219)
C4': (11.450,-16.101,-3.500)
C2': (12.290,-14.647,-1.839)
O2': (13.284,-13.923,-2.559)
N1: (9.846,-14.218,-1.098)
O4: (7.138,-13.886,1.880)
O2: (10.395,-12.041,-0.600)
C6: (9.041,-15.305,-0.798)
C5: (8.113,-15.286,0.171)
O3': (13.551,-16.647,-2.393)
N3: (8.771,-13.074,0.584)
OP1: (9.916,-20.107,-3.865)
OP2: (8.295,-19.365,-1.952)
C2: (9.718,-13.043,-0.393)
C1': (10.859,-14.244,-2.212)
C3': (12.255,-16.128,-2.211)
O5': (9.888,-17.765,-2.990)
O4': (10.386,-15.182,-3.159)
C5': (10.842,-17.409,-3.948)
P: (9.036,-19.095,-3.219)
C4': (11.450,-16.101,-3.500)
C2': (12.290,-14.647,-1.839)
O2': (13.284,-13.923,-2.559)
N1: (9.846,-14.218,-1.098)
O4: (7.138,-13.886,1.880)
O2: (10.395,-12.041,-0.600)
C6: (9.041,-15.305,-0.798)
C5: (8.113,-15.286,0.171)
O3': (13.551,-16.647,-2.393)
C4: (5.394,-13.217,-0.775)
N3: (6.184,-12.771,-1.808)
OP1: (4.188,-20.618,-2.104)
OP2: (3.592,-18.737,-0.425)
C2: (6.486,-13.431,-2.967)
C1': (6.217,-15.438,-4.391)
C3': (7.156,-17.506,-4.001)
O5': (4.617,-18.264,-2.660)
O4': (5.219,-16.427,-4.639)
C5': (5.005,-18.737,-3.919)
P: (3.701,-19.251,-1.805)
C4': (5.823,-17.721,-4.668)
C2': (7.566,-16.115,-4.491)
O2': (8.037,-16.044,-5.821)
N1: (5.945,-14.692,-3.096)
O4: (5.223,-12.498,0.223)
O2: (7.197,-12.930,-3.817)
C6: (5.140,-15.204,-2.096)
C5: (4.850,-14.538,-0.971)
O3': (8.029,-18.593,-4.352)
N3: (6.184,-12.771,-1.808)
OP1: (4.188,-20.618,-2.104)
OP2: (3.592,-18.737,-0.425)
C2: (6.486,-13.431,-2.967)
C1': (6.217,-15.438,-4.391)
C3': (7.156,-17.506,-4.001)
O5': (4.617,-18.264,-2.660)
O4': (5.219,-16.427,-4.639)
C5': (5.005,-18.737,-3.919)
P: (3.701,-19.251,-1.805)
C4': (5.823,-17.721,-4.668)
C2': (7.566,-16.115,-4.491)
O2': (8.037,-16.044,-5.821)
N1: (5.945,-14.692,-3.096)
O4: (5.223,-12.498,0.223)
O2: (7.197,-12.930,-3.817)
C6: (5.140,-15.204,-2.096)
C5: (4.850,-14.538,-0.971)
O3': (8.029,-18.593,-4.352)
Image (generated by PyMOL):