Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11248:11249
Extra
PDB:
ATOM 1 O3' A A1247 27.279 12.785 34.303 1.00 48.25 O
ATOM 2 P A A1248 28.880 12.875 34.202 1.00 36.36 P
ATOM 3 OP1 A A1248 29.204 13.320 32.827 1.00 36.67 O
ATOM 4 OP2 A A1248 29.411 11.575 34.706 1.00 36.05 O
ATOM 5 O5' A A1248 29.238 14.061 35.207 1.00 36.28 O
ATOM 6 C5' A A1248 29.343 13.848 36.612 1.00 35.98 C
ATOM 7 C4' A A1248 28.295 14.608 37.326 1.00 36.05 C
ATOM 8 O4' A A1248 27.039 13.901 37.213 1.00 36.10 O
ATOM 9 C3' A A1248 28.484 14.801 38.805 1.00 35.80 C
ATOM 10 O3' A A1248 29.358 15.866 39.084 1.00 35.83 O
ATOM 11 C2' A A1248 27.038 15.044 39.296 1.00 35.89 C
ATOM 12 O2' A A1248 26.700 16.422 39.229 1.00 36.15 O
ATOM 13 C1' A A1248 26.194 14.286 38.257 1.00 36.05 C
ATOM 14 N9 A A1248 25.552 13.093 38.799 1.00 35.86 N
ATOM 15 C8 A A1248 26.043 11.994 39.368 1.00 35.57 C
ATOM 16 N7 A A1248 25.159 11.100 39.734 1.00 35.49 N
ATOM 17 C5 A A1248 23.978 11.672 39.368 1.00 35.75 C
ATOM 18 C6 A A1248 22.637 11.276 39.485 1.00 35.83 C
ATOM 19 N6 A A1248 22.214 10.146 40.004 1.00 35.66 N
ATOM 20 N1 A A1248 21.697 12.087 39.007 1.00 36.13 N
ATOM 21 C2 A A1248 22.116 13.220 38.475 1.00 36.32 C
ATOM 22 N3 A A1248 23.342 13.726 38.314 1.00 36.28 N
ATOM 23 C4 A A1248 24.237 12.884 38.783 1.00 35.98 C
ATOM 24 P U A1249 30.276 15.858 40.396 1.00 36.74 P
ATOM 25 OP1 U A1249 31.102 14.625 40.360 1.00 36.50 O
ATOM 26 OP2 U A1249 29.380 16.087 41.563 1.00 36.67 O
ATOM 27 O5' U A1249 31.219 17.106 40.182 1.00 36.89 O
TER
ATOM 1 O3' A B1248 29.358 15.866 39.084 1.00 35.83 O
ATOM 2 P U B1249 30.276 15.858 40.396 1.00 36.74 P
ATOM 3 OP1 U B1249 31.102 14.625 40.360 1.00 36.50 O
ATOM 4 OP2 U B1249 29.380 16.087 41.563 1.00 36.67 O
ATOM 5 O5' U B1249 31.219 17.106 40.182 1.00 36.89 O
ATOM 6 C5' U B1249 30.708 18.422 40.155 1.00 37.15 C
ATOM 7 C4' U B1249 31.814 19.432 40.071 1.00 37.24 C
ATOM 8 O4' U B1249 32.673 19.261 41.208 1.00 36.97 O
ATOM 9 C3' U B1249 32.714 19.309 38.853 1.00 37.35 C
ATOM 10 O3' U B1249 33.237 20.573 38.545 1.00 37.58 O
ATOM 11 C2' U B1249 33.844 18.455 39.379 1.00 37.04 C
ATOM 12 O2' U B1249 35.056 18.531 38.643 1.00 37.09 O
ATOM 13 C1' U B1249 33.992 19.031 40.759 1.00 36.91 C
ATOM 14 N1 U B1249 34.642 18.145 41.693 1.00 36.58 N
ATOM 15 C2 U B1249 35.984 18.221 41.996 1.00 36.46 C
ATOM 16 O2 U B1249 36.855 18.968 41.559 1.00 36.60 O
ATOM 17 N3 U B1249 36.369 17.301 42.887 1.00 36.17 N
ATOM 18 C4 U B1249 35.599 16.389 43.492 1.00 35.99 C
ATOM 19 O4 U B1249 36.169 15.694 44.268 1.00 35.75 O
ATOM 20 C5 U B1249 34.246 16.362 43.161 1.00 36.11 C
ATOM 21 C6 U B1249 33.814 17.248 42.275 1.00 36.40 C
ATOM 22 P G B1250 32.863 21.283 37.171 1.00 38.55 P
ATOM 23 OP1 G B1250 33.105 22.731 37.366 1.00 38.77 O
ATOM 24 OP2 G B1250 31.491 20.811 36.805 1.00 38.64 O
ATOM 25 O5' G B1250 33.916 20.710 36.140 1.00 38.55 O
TER
ATOM 2 P A A1248 28.880 12.875 34.202 1.00 36.36 P
ATOM 3 OP1 A A1248 29.204 13.320 32.827 1.00 36.67 O
ATOM 4 OP2 A A1248 29.411 11.575 34.706 1.00 36.05 O
ATOM 5 O5' A A1248 29.238 14.061 35.207 1.00 36.28 O
ATOM 6 C5' A A1248 29.343 13.848 36.612 1.00 35.98 C
ATOM 7 C4' A A1248 28.295 14.608 37.326 1.00 36.05 C
ATOM 8 O4' A A1248 27.039 13.901 37.213 1.00 36.10 O
ATOM 9 C3' A A1248 28.484 14.801 38.805 1.00 35.80 C
ATOM 10 O3' A A1248 29.358 15.866 39.084 1.00 35.83 O
ATOM 11 C2' A A1248 27.038 15.044 39.296 1.00 35.89 C
ATOM 12 O2' A A1248 26.700 16.422 39.229 1.00 36.15 O
ATOM 13 C1' A A1248 26.194 14.286 38.257 1.00 36.05 C
ATOM 14 N9 A A1248 25.552 13.093 38.799 1.00 35.86 N
ATOM 15 C8 A A1248 26.043 11.994 39.368 1.00 35.57 C
ATOM 16 N7 A A1248 25.159 11.100 39.734 1.00 35.49 N
ATOM 17 C5 A A1248 23.978 11.672 39.368 1.00 35.75 C
ATOM 18 C6 A A1248 22.637 11.276 39.485 1.00 35.83 C
ATOM 19 N6 A A1248 22.214 10.146 40.004 1.00 35.66 N
ATOM 20 N1 A A1248 21.697 12.087 39.007 1.00 36.13 N
ATOM 21 C2 A A1248 22.116 13.220 38.475 1.00 36.32 C
ATOM 22 N3 A A1248 23.342 13.726 38.314 1.00 36.28 N
ATOM 23 C4 A A1248 24.237 12.884 38.783 1.00 35.98 C
ATOM 24 P U A1249 30.276 15.858 40.396 1.00 36.74 P
ATOM 25 OP1 U A1249 31.102 14.625 40.360 1.00 36.50 O
ATOM 26 OP2 U A1249 29.380 16.087 41.563 1.00 36.67 O
ATOM 27 O5' U A1249 31.219 17.106 40.182 1.00 36.89 O
TER
ATOM 1 O3' A B1248 29.358 15.866 39.084 1.00 35.83 O
ATOM 2 P U B1249 30.276 15.858 40.396 1.00 36.74 P
ATOM 3 OP1 U B1249 31.102 14.625 40.360 1.00 36.50 O
ATOM 4 OP2 U B1249 29.380 16.087 41.563 1.00 36.67 O
ATOM 5 O5' U B1249 31.219 17.106 40.182 1.00 36.89 O
ATOM 6 C5' U B1249 30.708 18.422 40.155 1.00 37.15 C
ATOM 7 C4' U B1249 31.814 19.432 40.071 1.00 37.24 C
ATOM 8 O4' U B1249 32.673 19.261 41.208 1.00 36.97 O
ATOM 9 C3' U B1249 32.714 19.309 38.853 1.00 37.35 C
ATOM 10 O3' U B1249 33.237 20.573 38.545 1.00 37.58 O
ATOM 11 C2' U B1249 33.844 18.455 39.379 1.00 37.04 C
ATOM 12 O2' U B1249 35.056 18.531 38.643 1.00 37.09 O
ATOM 13 C1' U B1249 33.992 19.031 40.759 1.00 36.91 C
ATOM 14 N1 U B1249 34.642 18.145 41.693 1.00 36.58 N
ATOM 15 C2 U B1249 35.984 18.221 41.996 1.00 36.46 C
ATOM 16 O2 U B1249 36.855 18.968 41.559 1.00 36.60 O
ATOM 17 N3 U B1249 36.369 17.301 42.887 1.00 36.17 N
ATOM 18 C4 U B1249 35.599 16.389 43.492 1.00 35.99 C
ATOM 19 O4 U B1249 36.169 15.694 44.268 1.00 35.75 O
ATOM 20 C5 U B1249 34.246 16.362 43.161 1.00 36.11 C
ATOM 21 C6 U B1249 33.814 17.248 42.275 1.00 36.40 C
ATOM 22 P G B1250 32.863 21.283 37.171 1.00 38.55 P
ATOM 23 OP1 G B1250 33.105 22.731 37.366 1.00 38.77 O
ATOM 24 OP2 G B1250 31.491 20.811 36.805 1.00 38.64 O
ATOM 25 O5' G B1250 33.916 20.710 36.140 1.00 38.55 O
TER
Atoms:
OP1: (29.204,13.320,32.827)
OP2: (29.411,11.575,34.706)
C3': (28.484,14.801,38.805)
C1': (26.194,14.286,38.257)
C5': (29.343,13.848,36.612)
O4': (27.039,13.901,37.213)
C8: (26.043,11.994,39.368)
O2': (26.700,16.422,39.229)
C6: (22.637,11.276,39.485)
C5: (23.978,11.672,39.368)
C4: (24.237,12.884,38.783)
P: (28.880,12.875,34.202)
C4': (28.295,14.608,37.326)
C2': (27.038,15.044,39.296)
C2: (22.116,13.220,38.475)
N1: (21.697,12.087,39.007)
N3: (23.342,13.726,38.314)
N6: (22.214,10.146,40.004)
N7: (25.159,11.100,39.734)
N9: (25.552,13.093,38.799)
O5': (29.238,14.061,35.207)
O3': (29.358,15.866,39.084)
OP2: (29.411,11.575,34.706)
C3': (28.484,14.801,38.805)
C1': (26.194,14.286,38.257)
C5': (29.343,13.848,36.612)
O4': (27.039,13.901,37.213)
C8: (26.043,11.994,39.368)
O2': (26.700,16.422,39.229)
C6: (22.637,11.276,39.485)
C5: (23.978,11.672,39.368)
C4: (24.237,12.884,38.783)
P: (28.880,12.875,34.202)
C4': (28.295,14.608,37.326)
C2': (27.038,15.044,39.296)
C2: (22.116,13.220,38.475)
N1: (21.697,12.087,39.007)
N3: (23.342,13.726,38.314)
N6: (22.214,10.146,40.004)
N7: (25.159,11.100,39.734)
N9: (25.552,13.093,38.799)
O5': (29.238,14.061,35.207)
O3': (29.358,15.866,39.084)
C4: (35.599,16.389,43.492)
N3: (36.369,17.301,42.887)
OP1: (31.102,14.625,40.360)
OP2: (29.380,16.087,41.563)
C2: (35.984,18.221,41.996)
C1': (33.992,19.031,40.759)
C3': (32.714,19.309,38.853)
O5': (31.219,17.106,40.182)
O4': (32.673,19.261,41.208)
C5': (30.708,18.422,40.155)
P: (30.276,15.858,40.396)
C4': (31.814,19.432,40.071)
C2': (33.844,18.455,39.379)
O2': (35.056,18.531,38.643)
N1: (34.642,18.145,41.693)
O4: (36.169,15.694,44.268)
O2: (36.855,18.968,41.559)
C6: (33.814,17.248,42.275)
C5: (34.246,16.362,43.161)
O3': (33.237,20.573,38.545)
N3: (36.369,17.301,42.887)
OP1: (31.102,14.625,40.360)
OP2: (29.380,16.087,41.563)
C2: (35.984,18.221,41.996)
C1': (33.992,19.031,40.759)
C3': (32.714,19.309,38.853)
O5': (31.219,17.106,40.182)
O4': (32.673,19.261,41.208)
C5': (30.708,18.422,40.155)
P: (30.276,15.858,40.396)
C4': (31.814,19.432,40.071)
C2': (33.844,18.455,39.379)
O2': (35.056,18.531,38.643)
N1: (34.642,18.145,41.693)
O4: (36.169,15.694,44.268)
O2: (36.855,18.968,41.559)
C6: (33.814,17.248,42.275)
C5: (34.246,16.362,43.161)
O3': (33.237,20.573,38.545)
Image (generated by PyMOL):