Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A5:A4
Extra
PDB:
ATOM 1 O3' U A 4 -6.314 14.815 20.745 1.00 41.00 O
ATOM 2 P U A 5 -6.287 16.417 20.868 1.00 44.25 P
ATOM 3 OP1 U A 5 -5.984 16.626 22.306 1.00 48.71 O
ATOM 4 OP2 U A 5 -7.540 16.982 20.300 1.00 47.23 O
ATOM 5 O5' U A 5 -5.043 16.829 19.966 1.00 36.46 O
ATOM 6 C5' U A 5 -3.755 16.414 20.391 1.00 37.66 C
ATOM 7 C4' U A 5 -2.685 16.772 19.393 1.00 38.30 C
ATOM 8 O4' U A 5 -2.955 16.109 18.131 1.00 36.59 O
ATOM 9 C3' U A 5 -2.568 18.235 18.997 1.00 37.52 C
ATOM 10 O3' U A 5 -1.924 19.049 19.965 1.00 37.06 O
ATOM 11 C2' U A 5 -1.794 18.119 17.696 1.00 30.92 C
ATOM 12 O2' U A 5 -0.446 17.767 17.966 1.00 37.53 O
ATOM 13 C1' U A 5 -2.469 16.905 17.072 1.00 33.53 C
ATOM 14 N1 U A 5 -3.601 17.269 16.200 1.00 29.58 N
ATOM 15 C2 U A 5 -3.301 17.643 14.910 1.00 32.05 C
ATOM 16 O2 U A 5 -2.142 17.680 14.513 1.00 32.82 O
ATOM 17 N3 U A 5 -4.395 17.961 14.133 1.00 30.30 N
ATOM 18 C4 U A 5 -5.721 17.923 14.530 1.00 32.81 C
ATOM 19 O4 U A 5 -6.619 18.231 13.745 1.00 37.79 O
ATOM 20 C5 U A 5 -5.941 17.523 15.885 1.00 33.21 C
ATOM 21 C6 U A 5 -4.894 17.214 16.652 1.00 35.45 C
ATOM 22 P C A 6 -2.242 20.623 20.024 1.00 36.06 P
ATOM 23 OP1 C A 6 -1.485 21.035 21.228 1.00 36.34 O
ATOM 24 OP2 C A 6 -3.698 20.914 19.969 1.00 30.38 O
ATOM 25 O5' C A 6 -1.601 21.197 18.678 1.00 31.29 O
TER
ATOM 1 O3' C B 3 -11.508 12.016 18.856 1.00 32.10 O
ATOM 2 P U B 4 -11.152 13.569 19.100 1.00 36.65 P
ATOM 3 OP1 U B 4 -11.639 13.781 20.481 1.00 40.48 O
ATOM 4 OP2 U B 4 -11.676 14.401 17.987 1.00 35.53 O
ATOM 5 O5' U B 4 -9.564 13.639 19.088 1.00 35.10 O
ATOM 6 C5' U B 4 -8.820 12.914 20.058 1.00 33.99 C
ATOM 7 C4' U B 4 -7.365 12.863 19.684 1.00 36.39 C
ATOM 8 O4' U B 4 -7.223 12.261 18.374 1.00 34.08 O
ATOM 9 C3' U B 4 -6.677 14.211 19.517 1.00 36.34 C
ATOM 10 O3' U B 4 -6.314 14.815 20.745 1.00 41.00 O
ATOM 11 C2' U B 4 -5.494 13.855 18.631 1.00 35.62 C
ATOM 12 O2' U B 4 -4.528 13.111 19.360 1.00 35.89 O
ATOM 13 C1' U B 4 -6.161 12.879 17.669 1.00 33.72 C
ATOM 14 N1 U B 4 -6.680 13.553 16.459 1.00 31.55 N
ATOM 15 C2 U B 4 -5.763 13.856 15.471 1.00 32.45 C
ATOM 16 O2 U B 4 -4.566 13.604 15.556 1.00 30.84 O
ATOM 17 N3 U B 4 -6.300 14.469 14.368 1.00 28.95 N
ATOM 18 C4 U B 4 -7.612 14.806 14.149 1.00 29.61 C
ATOM 19 O4 U B 4 -7.901 15.349 13.080 1.00 29.65 O
ATOM 20 C5 U B 4 -8.507 14.463 15.217 1.00 31.35 C
ATOM 21 C6 U B 4 -8.017 13.861 16.311 1.00 29.35 C
ATOM 22 P U B 5 -6.287 16.417 20.868 1.00 44.25 P
ATOM 23 OP1 U B 5 -5.984 16.626 22.306 1.00 48.71 O
ATOM 24 OP2 U B 5 -7.540 16.982 20.300 1.00 47.23 O
ATOM 25 O5' U B 5 -5.043 16.829 19.966 1.00 36.46 O
TER
ATOM 2 P U A 5 -6.287 16.417 20.868 1.00 44.25 P
ATOM 3 OP1 U A 5 -5.984 16.626 22.306 1.00 48.71 O
ATOM 4 OP2 U A 5 -7.540 16.982 20.300 1.00 47.23 O
ATOM 5 O5' U A 5 -5.043 16.829 19.966 1.00 36.46 O
ATOM 6 C5' U A 5 -3.755 16.414 20.391 1.00 37.66 C
ATOM 7 C4' U A 5 -2.685 16.772 19.393 1.00 38.30 C
ATOM 8 O4' U A 5 -2.955 16.109 18.131 1.00 36.59 O
ATOM 9 C3' U A 5 -2.568 18.235 18.997 1.00 37.52 C
ATOM 10 O3' U A 5 -1.924 19.049 19.965 1.00 37.06 O
ATOM 11 C2' U A 5 -1.794 18.119 17.696 1.00 30.92 C
ATOM 12 O2' U A 5 -0.446 17.767 17.966 1.00 37.53 O
ATOM 13 C1' U A 5 -2.469 16.905 17.072 1.00 33.53 C
ATOM 14 N1 U A 5 -3.601 17.269 16.200 1.00 29.58 N
ATOM 15 C2 U A 5 -3.301 17.643 14.910 1.00 32.05 C
ATOM 16 O2 U A 5 -2.142 17.680 14.513 1.00 32.82 O
ATOM 17 N3 U A 5 -4.395 17.961 14.133 1.00 30.30 N
ATOM 18 C4 U A 5 -5.721 17.923 14.530 1.00 32.81 C
ATOM 19 O4 U A 5 -6.619 18.231 13.745 1.00 37.79 O
ATOM 20 C5 U A 5 -5.941 17.523 15.885 1.00 33.21 C
ATOM 21 C6 U A 5 -4.894 17.214 16.652 1.00 35.45 C
ATOM 22 P C A 6 -2.242 20.623 20.024 1.00 36.06 P
ATOM 23 OP1 C A 6 -1.485 21.035 21.228 1.00 36.34 O
ATOM 24 OP2 C A 6 -3.698 20.914 19.969 1.00 30.38 O
ATOM 25 O5' C A 6 -1.601 21.197 18.678 1.00 31.29 O
TER
ATOM 1 O3' C B 3 -11.508 12.016 18.856 1.00 32.10 O
ATOM 2 P U B 4 -11.152 13.569 19.100 1.00 36.65 P
ATOM 3 OP1 U B 4 -11.639 13.781 20.481 1.00 40.48 O
ATOM 4 OP2 U B 4 -11.676 14.401 17.987 1.00 35.53 O
ATOM 5 O5' U B 4 -9.564 13.639 19.088 1.00 35.10 O
ATOM 6 C5' U B 4 -8.820 12.914 20.058 1.00 33.99 C
ATOM 7 C4' U B 4 -7.365 12.863 19.684 1.00 36.39 C
ATOM 8 O4' U B 4 -7.223 12.261 18.374 1.00 34.08 O
ATOM 9 C3' U B 4 -6.677 14.211 19.517 1.00 36.34 C
ATOM 10 O3' U B 4 -6.314 14.815 20.745 1.00 41.00 O
ATOM 11 C2' U B 4 -5.494 13.855 18.631 1.00 35.62 C
ATOM 12 O2' U B 4 -4.528 13.111 19.360 1.00 35.89 O
ATOM 13 C1' U B 4 -6.161 12.879 17.669 1.00 33.72 C
ATOM 14 N1 U B 4 -6.680 13.553 16.459 1.00 31.55 N
ATOM 15 C2 U B 4 -5.763 13.856 15.471 1.00 32.45 C
ATOM 16 O2 U B 4 -4.566 13.604 15.556 1.00 30.84 O
ATOM 17 N3 U B 4 -6.300 14.469 14.368 1.00 28.95 N
ATOM 18 C4 U B 4 -7.612 14.806 14.149 1.00 29.61 C
ATOM 19 O4 U B 4 -7.901 15.349 13.080 1.00 29.65 O
ATOM 20 C5 U B 4 -8.507 14.463 15.217 1.00 31.35 C
ATOM 21 C6 U B 4 -8.017 13.861 16.311 1.00 29.35 C
ATOM 22 P U B 5 -6.287 16.417 20.868 1.00 44.25 P
ATOM 23 OP1 U B 5 -5.984 16.626 22.306 1.00 48.71 O
ATOM 24 OP2 U B 5 -7.540 16.982 20.300 1.00 47.23 O
ATOM 25 O5' U B 5 -5.043 16.829 19.966 1.00 36.46 O
TER
Atoms:
C4: (-5.721,17.923,14.530)
N3: (-4.395,17.961,14.133)
OP1: (-5.984,16.626,22.306)
OP2: (-7.540,16.982,20.300)
C2: (-3.301,17.643,14.910)
C1': (-2.469,16.905,17.072)
C3': (-2.568,18.235,18.997)
O5': (-5.043,16.829,19.966)
O4': (-2.955,16.109,18.131)
C5': (-3.755,16.414,20.391)
P: (-6.287,16.417,20.868)
C4': (-2.685,16.772,19.393)
C2': (-1.794,18.119,17.696)
O2': (-0.446,17.767,17.966)
N1: (-3.601,17.269,16.200)
O4: (-6.619,18.231,13.745)
O2: (-2.142,17.680,14.513)
C6: (-4.894,17.214,16.652)
C5: (-5.941,17.523,15.885)
O3': (-1.924,19.049,19.965)
N3: (-4.395,17.961,14.133)
OP1: (-5.984,16.626,22.306)
OP2: (-7.540,16.982,20.300)
C2: (-3.301,17.643,14.910)
C1': (-2.469,16.905,17.072)
C3': (-2.568,18.235,18.997)
O5': (-5.043,16.829,19.966)
O4': (-2.955,16.109,18.131)
C5': (-3.755,16.414,20.391)
P: (-6.287,16.417,20.868)
C4': (-2.685,16.772,19.393)
C2': (-1.794,18.119,17.696)
O2': (-0.446,17.767,17.966)
N1: (-3.601,17.269,16.200)
O4: (-6.619,18.231,13.745)
O2: (-2.142,17.680,14.513)
C6: (-4.894,17.214,16.652)
C5: (-5.941,17.523,15.885)
O3': (-1.924,19.049,19.965)
C4: (-7.612,14.806,14.149)
N3: (-6.300,14.469,14.368)
OP1: (-11.639,13.781,20.481)
OP2: (-11.676,14.401,17.987)
C2: (-5.763,13.856,15.471)
C1': (-6.161,12.879,17.669)
C3': (-6.677,14.211,19.517)
O5': (-9.564,13.639,19.088)
O4': (-7.223,12.261,18.374)
C5': (-8.820,12.914,20.058)
P: (-11.152,13.569,19.100)
C4': (-7.365,12.863,19.684)
C2': (-5.494,13.855,18.631)
O2': (-4.528,13.111,19.360)
N1: (-6.680,13.553,16.459)
O4: (-7.901,15.349,13.080)
O2: (-4.566,13.604,15.556)
C6: (-8.017,13.861,16.311)
C5: (-8.507,14.463,15.217)
O3': (-6.314,14.815,20.745)
N3: (-6.300,14.469,14.368)
OP1: (-11.639,13.781,20.481)
OP2: (-11.676,14.401,17.987)
C2: (-5.763,13.856,15.471)
C1': (-6.161,12.879,17.669)
C3': (-6.677,14.211,19.517)
O5': (-9.564,13.639,19.088)
O4': (-7.223,12.261,18.374)
C5': (-8.820,12.914,20.058)
P: (-11.152,13.569,19.100)
C4': (-7.365,12.863,19.684)
C2': (-5.494,13.855,18.631)
O2': (-4.528,13.111,19.360)
N1: (-6.680,13.553,16.459)
O4: (-7.901,15.349,13.080)
O2: (-4.566,13.604,15.556)
C6: (-8.017,13.861,16.311)
C5: (-8.507,14.463,15.217)
O3': (-6.314,14.815,20.745)
Image (generated by PyMOL):