Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SKI:B41:B40
Extra
PDB:
ATOM 1 O3' U A 40 1.245 12.972 1.281 1.00 58.70 O
ATOM 2 P U A 41 2.166 13.026 -0.033 1.00 57.69 P
ATOM 3 OP1 U A 41 2.226 14.441 -0.471 1.00 58.48 O
ATOM 4 OP2 U A 41 1.701 11.987 -0.984 1.00 55.13 O
ATOM 5 O5' U A 41 3.602 12.574 0.510 1.00 59.27 O
ATOM 6 C5' U A 41 4.438 13.495 1.204 1.00 62.11 C
ATOM 7 C4' U A 41 5.697 12.808 1.693 1.00 63.03 C
ATOM 8 O4' U A 41 5.341 11.704 2.564 1.00 63.42 O
ATOM 9 C3' U A 41 6.536 12.154 0.605 1.00 61.13 C
ATOM 10 O3' U A 41 7.359 13.104 -0.057 1.00 60.91 O
ATOM 11 C2' U A 41 7.334 11.136 1.412 1.00 62.37 C
ATOM 12 O2' U A 41 8.438 11.701 2.098 1.00 65.18 O
ATOM 13 C1' U A 41 6.271 10.643 2.396 1.00 62.95 C
ATOM 14 N1 U A 41 5.560 9.382 1.938 1.00 60.52 N
ATOM 15 C2 U A 41 6.167 8.152 2.148 1.00 60.65 C
ATOM 16 O2 U A 41 7.251 8.021 2.688 1.00 62.00 O
ATOM 17 N3 U A 41 5.454 7.064 1.698 1.00 58.68 N
ATOM 18 C4 U A 41 4.218 7.076 1.072 1.00 56.76 C
ATOM 19 O4 U A 41 3.702 6.018 0.728 1.00 55.79 O
ATOM 20 C5 U A 41 3.645 8.388 0.885 1.00 56.97 C
ATOM 21 C6 U A 41 4.323 9.464 1.314 1.00 58.75 C
ATOM 22 P C A 42 7.740 12.893 -1.600 1.00 57.67 P
ATOM 23 OP1 C A 42 8.250 14.190 -2.105 1.00 58.70 O
ATOM 24 OP2 C A 42 6.607 12.235 -2.295 1.00 55.31 O
ATOM 25 O5' C A 42 8.949 11.840 -1.525 1.00 57.20 O
TER
ATOM 1 O3' C B 39 -3.702 9.303 0.835 1.00 47.76 O
ATOM 2 P U B 40 -2.451 9.628 -0.111 1.00 48.04 P
ATOM 3 OP1 U B 40 -2.854 10.713 -1.038 1.00 47.07 O
ATOM 4 OP2 U B 40 -1.929 8.351 -0.656 1.00 46.65 O
ATOM 5 O5' U B 40 -1.363 10.201 0.915 1.00 51.00 O
ATOM 6 C5' U B 40 -1.582 11.447 1.580 1.00 54.04 C
ATOM 7 C4' U B 40 -0.445 11.766 2.534 1.00 57.29 C
ATOM 8 O4' U B 40 -0.405 10.776 3.593 1.00 58.53 O
ATOM 9 C3' U B 40 0.945 11.728 1.914 1.00 57.60 C
ATOM 10 O3' U B 40 1.245 12.972 1.281 1.00 58.70 O
ATOM 11 C2' U B 40 1.825 11.454 3.134 1.00 60.02 C
ATOM 12 O2' U B 40 2.138 12.620 3.872 1.00 62.84 O
ATOM 13 C1' U B 40 0.940 10.517 3.962 1.00 59.98 C
ATOM 14 N1 U B 40 1.255 9.047 3.774 1.00 58.57 N
ATOM 15 C2 U B 40 2.375 8.496 4.388 1.00 60.16 C
ATOM 16 O2 U B 40 3.147 9.124 5.094 1.00 62.31 O
ATOM 17 N3 U B 40 2.566 7.154 4.146 1.00 58.82 N
ATOM 18 C4 U B 40 1.776 6.318 3.373 1.00 56.48 C
ATOM 19 O4 U B 40 2.079 5.134 3.253 1.00 55.14 O
ATOM 20 C5 U B 40 0.635 6.958 2.764 1.00 54.81 C
ATOM 21 C6 U B 40 0.424 8.265 2.984 1.00 56.06 C
ATOM 22 P U B 41 2.166 13.026 -0.033 1.00 57.69 P
ATOM 23 OP1 U B 41 2.226 14.441 -0.471 1.00 58.48 O
ATOM 24 OP2 U B 41 1.701 11.987 -0.984 1.00 55.13 O
ATOM 25 O5' U B 41 3.602 12.574 0.510 1.00 59.27 O
TER
ATOM 2 P U A 41 2.166 13.026 -0.033 1.00 57.69 P
ATOM 3 OP1 U A 41 2.226 14.441 -0.471 1.00 58.48 O
ATOM 4 OP2 U A 41 1.701 11.987 -0.984 1.00 55.13 O
ATOM 5 O5' U A 41 3.602 12.574 0.510 1.00 59.27 O
ATOM 6 C5' U A 41 4.438 13.495 1.204 1.00 62.11 C
ATOM 7 C4' U A 41 5.697 12.808 1.693 1.00 63.03 C
ATOM 8 O4' U A 41 5.341 11.704 2.564 1.00 63.42 O
ATOM 9 C3' U A 41 6.536 12.154 0.605 1.00 61.13 C
ATOM 10 O3' U A 41 7.359 13.104 -0.057 1.00 60.91 O
ATOM 11 C2' U A 41 7.334 11.136 1.412 1.00 62.37 C
ATOM 12 O2' U A 41 8.438 11.701 2.098 1.00 65.18 O
ATOM 13 C1' U A 41 6.271 10.643 2.396 1.00 62.95 C
ATOM 14 N1 U A 41 5.560 9.382 1.938 1.00 60.52 N
ATOM 15 C2 U A 41 6.167 8.152 2.148 1.00 60.65 C
ATOM 16 O2 U A 41 7.251 8.021 2.688 1.00 62.00 O
ATOM 17 N3 U A 41 5.454 7.064 1.698 1.00 58.68 N
ATOM 18 C4 U A 41 4.218 7.076 1.072 1.00 56.76 C
ATOM 19 O4 U A 41 3.702 6.018 0.728 1.00 55.79 O
ATOM 20 C5 U A 41 3.645 8.388 0.885 1.00 56.97 C
ATOM 21 C6 U A 41 4.323 9.464 1.314 1.00 58.75 C
ATOM 22 P C A 42 7.740 12.893 -1.600 1.00 57.67 P
ATOM 23 OP1 C A 42 8.250 14.190 -2.105 1.00 58.70 O
ATOM 24 OP2 C A 42 6.607 12.235 -2.295 1.00 55.31 O
ATOM 25 O5' C A 42 8.949 11.840 -1.525 1.00 57.20 O
TER
ATOM 1 O3' C B 39 -3.702 9.303 0.835 1.00 47.76 O
ATOM 2 P U B 40 -2.451 9.628 -0.111 1.00 48.04 P
ATOM 3 OP1 U B 40 -2.854 10.713 -1.038 1.00 47.07 O
ATOM 4 OP2 U B 40 -1.929 8.351 -0.656 1.00 46.65 O
ATOM 5 O5' U B 40 -1.363 10.201 0.915 1.00 51.00 O
ATOM 6 C5' U B 40 -1.582 11.447 1.580 1.00 54.04 C
ATOM 7 C4' U B 40 -0.445 11.766 2.534 1.00 57.29 C
ATOM 8 O4' U B 40 -0.405 10.776 3.593 1.00 58.53 O
ATOM 9 C3' U B 40 0.945 11.728 1.914 1.00 57.60 C
ATOM 10 O3' U B 40 1.245 12.972 1.281 1.00 58.70 O
ATOM 11 C2' U B 40 1.825 11.454 3.134 1.00 60.02 C
ATOM 12 O2' U B 40 2.138 12.620 3.872 1.00 62.84 O
ATOM 13 C1' U B 40 0.940 10.517 3.962 1.00 59.98 C
ATOM 14 N1 U B 40 1.255 9.047 3.774 1.00 58.57 N
ATOM 15 C2 U B 40 2.375 8.496 4.388 1.00 60.16 C
ATOM 16 O2 U B 40 3.147 9.124 5.094 1.00 62.31 O
ATOM 17 N3 U B 40 2.566 7.154 4.146 1.00 58.82 N
ATOM 18 C4 U B 40 1.776 6.318 3.373 1.00 56.48 C
ATOM 19 O4 U B 40 2.079 5.134 3.253 1.00 55.14 O
ATOM 20 C5 U B 40 0.635 6.958 2.764 1.00 54.81 C
ATOM 21 C6 U B 40 0.424 8.265 2.984 1.00 56.06 C
ATOM 22 P U B 41 2.166 13.026 -0.033 1.00 57.69 P
ATOM 23 OP1 U B 41 2.226 14.441 -0.471 1.00 58.48 O
ATOM 24 OP2 U B 41 1.701 11.987 -0.984 1.00 55.13 O
ATOM 25 O5' U B 41 3.602 12.574 0.510 1.00 59.27 O
TER
Atoms:
C4: (4.218,7.076,1.072)
N3: (5.454,7.064,1.698)
OP1: (2.226,14.441,-0.471)
OP2: (1.701,11.987,-0.984)
C2: (6.167,8.152,2.148)
C1': (6.271,10.643,2.396)
C3': (6.536,12.154,0.605)
O5': (3.602,12.574,0.510)
O4': (5.341,11.704,2.564)
C5': (4.438,13.495,1.204)
P: (2.166,13.026,-0.033)
C4': (5.697,12.808,1.693)
C2': (7.334,11.136,1.412)
O2': (8.438,11.701,2.098)
N1: (5.560,9.382,1.938)
O4: (3.702,6.018,0.728)
O2: (7.251,8.021,2.688)
C6: (4.323,9.464,1.314)
C5: (3.645,8.388,0.885)
O3': (7.359,13.104,-0.057)
N3: (5.454,7.064,1.698)
OP1: (2.226,14.441,-0.471)
OP2: (1.701,11.987,-0.984)
C2: (6.167,8.152,2.148)
C1': (6.271,10.643,2.396)
C3': (6.536,12.154,0.605)
O5': (3.602,12.574,0.510)
O4': (5.341,11.704,2.564)
C5': (4.438,13.495,1.204)
P: (2.166,13.026,-0.033)
C4': (5.697,12.808,1.693)
C2': (7.334,11.136,1.412)
O2': (8.438,11.701,2.098)
N1: (5.560,9.382,1.938)
O4: (3.702,6.018,0.728)
O2: (7.251,8.021,2.688)
C6: (4.323,9.464,1.314)
C5: (3.645,8.388,0.885)
O3': (7.359,13.104,-0.057)
C4: (1.776,6.318,3.373)
N3: (2.566,7.154,4.146)
OP1: (-2.854,10.713,-1.038)
OP2: (-1.929,8.351,-0.656)
C2: (2.375,8.496,4.388)
C1': (0.940,10.517,3.962)
C3': (0.945,11.728,1.914)
O5': (-1.363,10.201,0.915)
O4': (-0.405,10.776,3.593)
C5': (-1.582,11.447,1.580)
P: (-2.451,9.628,-0.111)
C4': (-0.445,11.766,2.534)
C2': (1.825,11.454,3.134)
O2': (2.138,12.620,3.872)
N1: (1.255,9.047,3.774)
O4: (2.079,5.134,3.253)
O2: (3.147,9.124,5.094)
C6: (0.424,8.265,2.984)
C5: (0.635,6.958,2.764)
O3': (1.245,12.972,1.281)
N3: (2.566,7.154,4.146)
OP1: (-2.854,10.713,-1.038)
OP2: (-1.929,8.351,-0.656)
C2: (2.375,8.496,4.388)
C1': (0.940,10.517,3.962)
C3': (0.945,11.728,1.914)
O5': (-1.363,10.201,0.915)
O4': (-0.405,10.776,3.593)
C5': (-1.582,11.447,1.580)
P: (-2.451,9.628,-0.111)
C4': (-0.445,11.766,2.534)
C2': (1.825,11.454,3.134)
O2': (2.138,12.620,3.872)
N1: (1.255,9.047,3.774)
O4: (2.079,5.134,3.253)
O2: (3.147,9.124,5.094)
C6: (0.424,8.265,2.984)
C5: (0.635,6.958,2.764)
O3': (1.245,12.972,1.281)
Image (generated by PyMOL):