Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1122:A2484
Extra
PDB:
ATOM 1 O3' G A1121 -88.530 -71.140 -23.111 1.00 0.01 O
ATOM 2 P A A1122 -88.226 -72.684 -22.852 1.00 0.01 P
ATOM 3 OP1 A A1122 -88.461 -73.392 -24.123 1.00 0.01 O
ATOM 4 OP2 A A1122 -89.000 -73.102 -21.650 1.00 0.01 O
ATOM 5 O5' A A1122 -86.685 -72.678 -22.534 1.00 0.01 O
ATOM 6 C5' A A1122 -86.164 -72.007 -21.406 1.00 0.01 C
ATOM 7 C4' A A1122 -85.338 -70.842 -21.831 1.00 0.01 C
ATOM 8 O4' A A1122 -86.199 -69.724 -21.999 1.00 0.01 O
ATOM 9 C3' A A1122 -84.274 -70.352 -20.860 1.00 0.01 C
ATOM 10 O3' A A1122 -83.062 -71.100 -20.940 1.00 0.01 O
ATOM 11 C2' A A1122 -84.096 -68.911 -21.286 1.00 0.01 C
ATOM 12 O2' A A1122 -83.166 -68.838 -22.350 1.00 0.01 O
ATOM 13 C1' A A1122 -85.480 -68.548 -21.827 1.00 0.01 C
ATOM 14 N9 A A1122 -86.245 -67.675 -20.944 1.00 0.01 N
ATOM 15 C8 A A1122 -86.782 -67.939 -19.751 1.00 0.01 C
ATOM 16 N7 A A1122 -87.453 -66.932 -19.268 1.00 0.01 N
ATOM 17 C5 A A1122 -87.384 -65.959 -20.226 1.00 0.01 C
ATOM 18 C6 A A1122 -87.887 -64.654 -20.311 1.00 0.01 C
ATOM 19 N6 A A1122 -88.600 -64.034 -19.395 1.00 0.01 N
ATOM 20 N1 A A1122 -87.632 -63.969 -21.419 1.00 0.01 N
ATOM 21 C2 A A1122 -86.893 -64.558 -22.354 1.00 0.01 C
ATOM 22 N3 A A1122 -86.357 -65.769 -22.379 1.00 0.01 N
ATOM 23 C4 A A1122 -86.651 -66.427 -21.272 1.00 0.01 C
ATOM 24 P U A1123 -82.176 -71.348 -19.632 1.00 0.01 P
ATOM 25 OP1 U A1123 -82.793 -72.500 -18.918 1.00 0.01 O
ATOM 26 OP2 U A1123 -82.047 -70.038 -18.953 1.00 0.01 O
ATOM 27 O5' U A1123 -80.769 -71.796 -20.192 1.00 0.01 O
TER
ATOM 1 O3' G B2483 -90.358 -63.576 -15.154 1.00 0.01 O
ATOM 2 P U B2484 -88.935 -63.194 -15.722 1.00 8.27 P
ATOM 3 OP1 U B2484 -88.395 -64.382 -16.391 1.00 8.27 O
ATOM 4 OP2 U B2484 -88.186 -62.616 -14.611 1.00 8.27 O
ATOM 5 O5' U B2484 -89.284 -62.081 -16.785 1.00 8.27 O
ATOM 6 C5' U B2484 -88.372 -61.030 -17.078 1.00 8.27 C
ATOM 7 C4' U B2484 -88.974 -59.677 -16.796 1.00 8.27 C
ATOM 8 O4' U B2484 -89.815 -59.276 -17.923 1.00 8.27 O
ATOM 9 C3' U B2484 -89.877 -59.644 -15.581 1.00 8.27 C
ATOM 10 O3' U B2484 -89.875 -58.321 -15.035 1.00 8.27 O
ATOM 11 C2' U B2484 -91.238 -59.983 -16.201 1.00 8.27 C
ATOM 12 O2' U B2484 -92.379 -59.668 -15.412 1.00 8.27 O
ATOM 13 C1' U B2484 -91.160 -59.159 -17.479 1.00 8.27 C
ATOM 14 N1 U B2484 -92.066 -59.604 -18.569 1.00 9.71 N
ATOM 15 C2 U B2484 -93.382 -59.073 -18.627 1.00 9.71 C
ATOM 16 O2 U B2484 -93.868 -58.282 -17.807 1.00 9.71 O
ATOM 17 N3 U B2484 -94.147 -59.510 -19.692 1.00 9.71 N
ATOM 18 C4 U B2484 -93.750 -60.382 -20.699 1.00 9.71 C
ATOM 19 O4 U B2484 -94.535 -60.686 -21.617 1.00 9.71 O
ATOM 20 C5 U B2484 -92.389 -60.865 -20.573 1.00 9.71 C
ATOM 21 C6 U B2484 -91.604 -60.472 -19.545 1.00 9.71 C
ATOM 22 P U B2485 -89.260 -58.059 -13.570 1.00 0.01 P
ATOM 23 OP1 U B2485 -87.779 -58.202 -13.678 1.00 0.01 O
ATOM 24 OP2 U B2485 -90.007 -58.935 -12.600 1.00 0.01 O
ATOM 25 O5' U B2485 -89.641 -56.548 -13.304 1.00 0.01 O
TER
ATOM 2 P A A1122 -88.226 -72.684 -22.852 1.00 0.01 P
ATOM 3 OP1 A A1122 -88.461 -73.392 -24.123 1.00 0.01 O
ATOM 4 OP2 A A1122 -89.000 -73.102 -21.650 1.00 0.01 O
ATOM 5 O5' A A1122 -86.685 -72.678 -22.534 1.00 0.01 O
ATOM 6 C5' A A1122 -86.164 -72.007 -21.406 1.00 0.01 C
ATOM 7 C4' A A1122 -85.338 -70.842 -21.831 1.00 0.01 C
ATOM 8 O4' A A1122 -86.199 -69.724 -21.999 1.00 0.01 O
ATOM 9 C3' A A1122 -84.274 -70.352 -20.860 1.00 0.01 C
ATOM 10 O3' A A1122 -83.062 -71.100 -20.940 1.00 0.01 O
ATOM 11 C2' A A1122 -84.096 -68.911 -21.286 1.00 0.01 C
ATOM 12 O2' A A1122 -83.166 -68.838 -22.350 1.00 0.01 O
ATOM 13 C1' A A1122 -85.480 -68.548 -21.827 1.00 0.01 C
ATOM 14 N9 A A1122 -86.245 -67.675 -20.944 1.00 0.01 N
ATOM 15 C8 A A1122 -86.782 -67.939 -19.751 1.00 0.01 C
ATOM 16 N7 A A1122 -87.453 -66.932 -19.268 1.00 0.01 N
ATOM 17 C5 A A1122 -87.384 -65.959 -20.226 1.00 0.01 C
ATOM 18 C6 A A1122 -87.887 -64.654 -20.311 1.00 0.01 C
ATOM 19 N6 A A1122 -88.600 -64.034 -19.395 1.00 0.01 N
ATOM 20 N1 A A1122 -87.632 -63.969 -21.419 1.00 0.01 N
ATOM 21 C2 A A1122 -86.893 -64.558 -22.354 1.00 0.01 C
ATOM 22 N3 A A1122 -86.357 -65.769 -22.379 1.00 0.01 N
ATOM 23 C4 A A1122 -86.651 -66.427 -21.272 1.00 0.01 C
ATOM 24 P U A1123 -82.176 -71.348 -19.632 1.00 0.01 P
ATOM 25 OP1 U A1123 -82.793 -72.500 -18.918 1.00 0.01 O
ATOM 26 OP2 U A1123 -82.047 -70.038 -18.953 1.00 0.01 O
ATOM 27 O5' U A1123 -80.769 -71.796 -20.192 1.00 0.01 O
TER
ATOM 1 O3' G B2483 -90.358 -63.576 -15.154 1.00 0.01 O
ATOM 2 P U B2484 -88.935 -63.194 -15.722 1.00 8.27 P
ATOM 3 OP1 U B2484 -88.395 -64.382 -16.391 1.00 8.27 O
ATOM 4 OP2 U B2484 -88.186 -62.616 -14.611 1.00 8.27 O
ATOM 5 O5' U B2484 -89.284 -62.081 -16.785 1.00 8.27 O
ATOM 6 C5' U B2484 -88.372 -61.030 -17.078 1.00 8.27 C
ATOM 7 C4' U B2484 -88.974 -59.677 -16.796 1.00 8.27 C
ATOM 8 O4' U B2484 -89.815 -59.276 -17.923 1.00 8.27 O
ATOM 9 C3' U B2484 -89.877 -59.644 -15.581 1.00 8.27 C
ATOM 10 O3' U B2484 -89.875 -58.321 -15.035 1.00 8.27 O
ATOM 11 C2' U B2484 -91.238 -59.983 -16.201 1.00 8.27 C
ATOM 12 O2' U B2484 -92.379 -59.668 -15.412 1.00 8.27 O
ATOM 13 C1' U B2484 -91.160 -59.159 -17.479 1.00 8.27 C
ATOM 14 N1 U B2484 -92.066 -59.604 -18.569 1.00 9.71 N
ATOM 15 C2 U B2484 -93.382 -59.073 -18.627 1.00 9.71 C
ATOM 16 O2 U B2484 -93.868 -58.282 -17.807 1.00 9.71 O
ATOM 17 N3 U B2484 -94.147 -59.510 -19.692 1.00 9.71 N
ATOM 18 C4 U B2484 -93.750 -60.382 -20.699 1.00 9.71 C
ATOM 19 O4 U B2484 -94.535 -60.686 -21.617 1.00 9.71 O
ATOM 20 C5 U B2484 -92.389 -60.865 -20.573 1.00 9.71 C
ATOM 21 C6 U B2484 -91.604 -60.472 -19.545 1.00 9.71 C
ATOM 22 P U B2485 -89.260 -58.059 -13.570 1.00 0.01 P
ATOM 23 OP1 U B2485 -87.779 -58.202 -13.678 1.00 0.01 O
ATOM 24 OP2 U B2485 -90.007 -58.935 -12.600 1.00 0.01 O
ATOM 25 O5' U B2485 -89.641 -56.548 -13.304 1.00 0.01 O
TER
Atoms:
OP1: (-88.461,-73.392,-24.123)
OP2: (-89.000,-73.102,-21.650)
C3': (-84.274,-70.352,-20.860)
C1': (-85.480,-68.548,-21.827)
C5': (-86.164,-72.007,-21.406)
O4': (-86.199,-69.724,-21.999)
C8: (-86.782,-67.939,-19.751)
O2': (-83.166,-68.838,-22.350)
C6: (-87.887,-64.654,-20.311)
C5: (-87.384,-65.959,-20.226)
C4: (-86.651,-66.427,-21.272)
P: (-88.226,-72.684,-22.852)
C4': (-85.338,-70.842,-21.831)
C2': (-84.096,-68.911,-21.286)
C2: (-86.893,-64.558,-22.354)
N1: (-87.632,-63.969,-21.419)
N3: (-86.357,-65.769,-22.379)
N6: (-88.600,-64.034,-19.395)
N7: (-87.453,-66.932,-19.268)
N9: (-86.245,-67.675,-20.944)
O5': (-86.685,-72.678,-22.534)
O3': (-83.062,-71.100,-20.940)
OP2: (-89.000,-73.102,-21.650)
C3': (-84.274,-70.352,-20.860)
C1': (-85.480,-68.548,-21.827)
C5': (-86.164,-72.007,-21.406)
O4': (-86.199,-69.724,-21.999)
C8: (-86.782,-67.939,-19.751)
O2': (-83.166,-68.838,-22.350)
C6: (-87.887,-64.654,-20.311)
C5: (-87.384,-65.959,-20.226)
C4: (-86.651,-66.427,-21.272)
P: (-88.226,-72.684,-22.852)
C4': (-85.338,-70.842,-21.831)
C2': (-84.096,-68.911,-21.286)
C2: (-86.893,-64.558,-22.354)
N1: (-87.632,-63.969,-21.419)
N3: (-86.357,-65.769,-22.379)
N6: (-88.600,-64.034,-19.395)
N7: (-87.453,-66.932,-19.268)
N9: (-86.245,-67.675,-20.944)
O5': (-86.685,-72.678,-22.534)
O3': (-83.062,-71.100,-20.940)
C4: (-93.750,-60.382,-20.699)
N3: (-94.147,-59.510,-19.692)
OP1: (-88.395,-64.382,-16.391)
OP2: (-88.186,-62.616,-14.611)
C2: (-93.382,-59.073,-18.627)
C1': (-91.160,-59.159,-17.479)
C3': (-89.877,-59.644,-15.581)
O5': (-89.284,-62.081,-16.785)
O4': (-89.815,-59.276,-17.923)
C5': (-88.372,-61.030,-17.078)
P: (-88.935,-63.194,-15.722)
C4': (-88.974,-59.677,-16.796)
C2': (-91.238,-59.983,-16.201)
O2': (-92.379,-59.668,-15.412)
N1: (-92.066,-59.604,-18.569)
O4: (-94.535,-60.686,-21.617)
O2: (-93.868,-58.282,-17.807)
C6: (-91.604,-60.472,-19.545)
C5: (-92.389,-60.865,-20.573)
O3': (-89.875,-58.321,-15.035)
N3: (-94.147,-59.510,-19.692)
OP1: (-88.395,-64.382,-16.391)
OP2: (-88.186,-62.616,-14.611)
C2: (-93.382,-59.073,-18.627)
C1': (-91.160,-59.159,-17.479)
C3': (-89.877,-59.644,-15.581)
O5': (-89.284,-62.081,-16.785)
O4': (-89.815,-59.276,-17.923)
C5': (-88.372,-61.030,-17.078)
P: (-88.935,-63.194,-15.722)
C4': (-88.974,-59.677,-16.796)
C2': (-91.238,-59.983,-16.201)
O2': (-92.379,-59.668,-15.412)
N1: (-92.066,-59.604,-18.569)
O4: (-94.535,-60.686,-21.617)
O2: (-93.868,-58.282,-17.807)
C6: (-91.604,-60.472,-19.545)
C5: (-92.389,-60.865,-20.573)
O3': (-89.875,-58.321,-15.035)
Image (generated by PyMOL):