Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11248:12612
Extra
PDB:
ATOM 1 O3' A A1247 27.279 12.785 34.303 1.00 48.25 O
ATOM 2 P A A1248 28.880 12.875 34.202 1.00 36.36 P
ATOM 3 OP1 A A1248 29.204 13.320 32.827 1.00 36.67 O
ATOM 4 OP2 A A1248 29.411 11.575 34.706 1.00 36.05 O
ATOM 5 O5' A A1248 29.238 14.061 35.207 1.00 36.28 O
ATOM 6 C5' A A1248 29.343 13.848 36.612 1.00 35.98 C
ATOM 7 C4' A A1248 28.295 14.608 37.326 1.00 36.05 C
ATOM 8 O4' A A1248 27.039 13.901 37.213 1.00 36.10 O
ATOM 9 C3' A A1248 28.484 14.801 38.805 1.00 35.80 C
ATOM 10 O3' A A1248 29.358 15.866 39.084 1.00 35.83 O
ATOM 11 C2' A A1248 27.038 15.044 39.296 1.00 35.89 C
ATOM 12 O2' A A1248 26.700 16.422 39.229 1.00 36.15 O
ATOM 13 C1' A A1248 26.194 14.286 38.257 1.00 36.05 C
ATOM 14 N9 A A1248 25.552 13.093 38.799 1.00 35.86 N
ATOM 15 C8 A A1248 26.043 11.994 39.368 1.00 35.57 C
ATOM 16 N7 A A1248 25.159 11.100 39.734 1.00 35.49 N
ATOM 17 C5 A A1248 23.978 11.672 39.368 1.00 35.75 C
ATOM 18 C6 A A1248 22.637 11.276 39.485 1.00 35.83 C
ATOM 19 N6 A A1248 22.214 10.146 40.004 1.00 35.66 N
ATOM 20 N1 A A1248 21.697 12.087 39.007 1.00 36.13 N
ATOM 21 C2 A A1248 22.116 13.220 38.475 1.00 36.32 C
ATOM 22 N3 A A1248 23.342 13.726 38.314 1.00 36.28 N
ATOM 23 C4 A A1248 24.237 12.884 38.783 1.00 35.98 C
ATOM 24 P U A1249 30.276 15.858 40.396 1.00 36.74 P
ATOM 25 OP1 U A1249 31.102 14.625 40.360 1.00 36.50 O
ATOM 26 OP2 U A1249 29.380 16.087 41.563 1.00 36.67 O
ATOM 27 O5' U A1249 31.219 17.106 40.182 1.00 36.89 O
TER
ATOM 1 O3' U B2611 23.215 5.503 41.429 1.00 42.44 O
ATOM 2 P U B2612 23.132 6.954 42.063 1.00 64.66 P
ATOM 3 OP1 U B2612 23.071 7.922 40.996 1.00 64.93 O
ATOM 4 OP2 U B2612 24.183 7.082 43.054 1.00 64.41 O
ATOM 5 O5' U B2612 21.773 6.842 42.784 1.00 64.69 O
ATOM 6 C5' U B2612 20.625 7.429 42.292 1.00 64.97 C
ATOM 7 C4' U B2612 19.808 7.812 43.453 1.00 64.93 C
ATOM 8 O4' U B2612 19.235 9.104 43.238 1.00 65.18 O
ATOM 9 C3' U B2612 18.646 6.903 43.785 1.00 64.94 C
ATOM 10 O3' U B2612 19.036 5.772 44.531 1.00 64.67 O
ATOM 11 C2' U B2612 17.720 7.841 44.540 1.00 65.04 C
ATOM 12 O2' U B2612 18.193 8.056 45.877 1.00 64.82 O
ATOM 13 C1' U B2612 17.922 9.127 43.735 1.00 65.28 C
ATOM 14 N1 U B2612 17.039 9.205 42.564 1.00 65.59 N
ATOM 15 C2 U B2612 15.722 9.512 42.751 1.00 65.78 C
ATOM 16 O2 U B2612 15.268 9.653 43.901 1.00 65.69 O
ATOM 17 N3 U B2612 15.051 9.609 41.521 1.00 66.09 N
ATOM 18 C4 U B2612 15.608 9.444 40.235 1.00 66.21 C
ATOM 19 O4 U B2612 14.923 9.538 39.218 1.00 66.50 O
ATOM 20 C5 U B2612 16.994 9.152 40.160 1.00 65.98 C
ATOM 21 C6 U B2612 17.624 9.064 41.314 1.00 65.69 C
ATOM 22 P U B2613 18.756 4.302 43.963 1.00 46.48 P
ATOM 23 OP1 U B2613 20.009 3.540 44.056 1.00 46.25 O
ATOM 24 OP2 U B2613 18.115 4.458 42.612 1.00 46.79 O
ATOM 25 O5' U B2613 17.722 3.710 45.026 1.00 46.41 O
TER
ATOM 2 P A A1248 28.880 12.875 34.202 1.00 36.36 P
ATOM 3 OP1 A A1248 29.204 13.320 32.827 1.00 36.67 O
ATOM 4 OP2 A A1248 29.411 11.575 34.706 1.00 36.05 O
ATOM 5 O5' A A1248 29.238 14.061 35.207 1.00 36.28 O
ATOM 6 C5' A A1248 29.343 13.848 36.612 1.00 35.98 C
ATOM 7 C4' A A1248 28.295 14.608 37.326 1.00 36.05 C
ATOM 8 O4' A A1248 27.039 13.901 37.213 1.00 36.10 O
ATOM 9 C3' A A1248 28.484 14.801 38.805 1.00 35.80 C
ATOM 10 O3' A A1248 29.358 15.866 39.084 1.00 35.83 O
ATOM 11 C2' A A1248 27.038 15.044 39.296 1.00 35.89 C
ATOM 12 O2' A A1248 26.700 16.422 39.229 1.00 36.15 O
ATOM 13 C1' A A1248 26.194 14.286 38.257 1.00 36.05 C
ATOM 14 N9 A A1248 25.552 13.093 38.799 1.00 35.86 N
ATOM 15 C8 A A1248 26.043 11.994 39.368 1.00 35.57 C
ATOM 16 N7 A A1248 25.159 11.100 39.734 1.00 35.49 N
ATOM 17 C5 A A1248 23.978 11.672 39.368 1.00 35.75 C
ATOM 18 C6 A A1248 22.637 11.276 39.485 1.00 35.83 C
ATOM 19 N6 A A1248 22.214 10.146 40.004 1.00 35.66 N
ATOM 20 N1 A A1248 21.697 12.087 39.007 1.00 36.13 N
ATOM 21 C2 A A1248 22.116 13.220 38.475 1.00 36.32 C
ATOM 22 N3 A A1248 23.342 13.726 38.314 1.00 36.28 N
ATOM 23 C4 A A1248 24.237 12.884 38.783 1.00 35.98 C
ATOM 24 P U A1249 30.276 15.858 40.396 1.00 36.74 P
ATOM 25 OP1 U A1249 31.102 14.625 40.360 1.00 36.50 O
ATOM 26 OP2 U A1249 29.380 16.087 41.563 1.00 36.67 O
ATOM 27 O5' U A1249 31.219 17.106 40.182 1.00 36.89 O
TER
ATOM 1 O3' U B2611 23.215 5.503 41.429 1.00 42.44 O
ATOM 2 P U B2612 23.132 6.954 42.063 1.00 64.66 P
ATOM 3 OP1 U B2612 23.071 7.922 40.996 1.00 64.93 O
ATOM 4 OP2 U B2612 24.183 7.082 43.054 1.00 64.41 O
ATOM 5 O5' U B2612 21.773 6.842 42.784 1.00 64.69 O
ATOM 6 C5' U B2612 20.625 7.429 42.292 1.00 64.97 C
ATOM 7 C4' U B2612 19.808 7.812 43.453 1.00 64.93 C
ATOM 8 O4' U B2612 19.235 9.104 43.238 1.00 65.18 O
ATOM 9 C3' U B2612 18.646 6.903 43.785 1.00 64.94 C
ATOM 10 O3' U B2612 19.036 5.772 44.531 1.00 64.67 O
ATOM 11 C2' U B2612 17.720 7.841 44.540 1.00 65.04 C
ATOM 12 O2' U B2612 18.193 8.056 45.877 1.00 64.82 O
ATOM 13 C1' U B2612 17.922 9.127 43.735 1.00 65.28 C
ATOM 14 N1 U B2612 17.039 9.205 42.564 1.00 65.59 N
ATOM 15 C2 U B2612 15.722 9.512 42.751 1.00 65.78 C
ATOM 16 O2 U B2612 15.268 9.653 43.901 1.00 65.69 O
ATOM 17 N3 U B2612 15.051 9.609 41.521 1.00 66.09 N
ATOM 18 C4 U B2612 15.608 9.444 40.235 1.00 66.21 C
ATOM 19 O4 U B2612 14.923 9.538 39.218 1.00 66.50 O
ATOM 20 C5 U B2612 16.994 9.152 40.160 1.00 65.98 C
ATOM 21 C6 U B2612 17.624 9.064 41.314 1.00 65.69 C
ATOM 22 P U B2613 18.756 4.302 43.963 1.00 46.48 P
ATOM 23 OP1 U B2613 20.009 3.540 44.056 1.00 46.25 O
ATOM 24 OP2 U B2613 18.115 4.458 42.612 1.00 46.79 O
ATOM 25 O5' U B2613 17.722 3.710 45.026 1.00 46.41 O
TER
Atoms:
OP1: (29.204,13.320,32.827)
OP2: (29.411,11.575,34.706)
C3': (28.484,14.801,38.805)
C1': (26.194,14.286,38.257)
C5': (29.343,13.848,36.612)
O4': (27.039,13.901,37.213)
C8: (26.043,11.994,39.368)
O2': (26.700,16.422,39.229)
C6: (22.637,11.276,39.485)
C5: (23.978,11.672,39.368)
C4: (24.237,12.884,38.783)
P: (28.880,12.875,34.202)
C4': (28.295,14.608,37.326)
C2': (27.038,15.044,39.296)
C2: (22.116,13.220,38.475)
N1: (21.697,12.087,39.007)
N3: (23.342,13.726,38.314)
N6: (22.214,10.146,40.004)
N7: (25.159,11.100,39.734)
N9: (25.552,13.093,38.799)
O5': (29.238,14.061,35.207)
O3': (29.358,15.866,39.084)
OP2: (29.411,11.575,34.706)
C3': (28.484,14.801,38.805)
C1': (26.194,14.286,38.257)
C5': (29.343,13.848,36.612)
O4': (27.039,13.901,37.213)
C8: (26.043,11.994,39.368)
O2': (26.700,16.422,39.229)
C6: (22.637,11.276,39.485)
C5: (23.978,11.672,39.368)
C4: (24.237,12.884,38.783)
P: (28.880,12.875,34.202)
C4': (28.295,14.608,37.326)
C2': (27.038,15.044,39.296)
C2: (22.116,13.220,38.475)
N1: (21.697,12.087,39.007)
N3: (23.342,13.726,38.314)
N6: (22.214,10.146,40.004)
N7: (25.159,11.100,39.734)
N9: (25.552,13.093,38.799)
O5': (29.238,14.061,35.207)
O3': (29.358,15.866,39.084)
C4: (15.608,9.444,40.235)
N3: (15.051,9.609,41.521)
OP1: (23.071,7.922,40.996)
OP2: (24.183,7.082,43.054)
C2: (15.722,9.512,42.751)
C1': (17.922,9.127,43.735)
C3': (18.646,6.903,43.785)
O5': (21.773,6.842,42.784)
O4': (19.235,9.104,43.238)
C5': (20.625,7.429,42.292)
P: (23.132,6.954,42.063)
C4': (19.808,7.812,43.453)
C2': (17.720,7.841,44.540)
O2': (18.193,8.056,45.877)
N1: (17.039,9.205,42.564)
O4: (14.923,9.538,39.218)
O2: (15.268,9.653,43.901)
C6: (17.624,9.064,41.314)
C5: (16.994,9.152,40.160)
O3': (19.036,5.772,44.531)
N3: (15.051,9.609,41.521)
OP1: (23.071,7.922,40.996)
OP2: (24.183,7.082,43.054)
C2: (15.722,9.512,42.751)
C1': (17.922,9.127,43.735)
C3': (18.646,6.903,43.785)
O5': (21.773,6.842,42.784)
O4': (19.235,9.104,43.238)
C5': (20.625,7.429,42.292)
P: (23.132,6.954,42.063)
C4': (19.808,7.812,43.453)
C2': (17.720,7.841,44.540)
O2': (18.193,8.056,45.877)
N1: (17.039,9.205,42.564)
O4: (14.923,9.538,39.218)
O2: (15.268,9.653,43.901)
C6: (17.624,9.064,41.314)
C5: (16.994,9.152,40.160)
O3': (19.036,5.772,44.531)
Image (generated by PyMOL):