Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:Y78:Y77
Extra
PDB:
ATOM 1 O3' U A 77 42.337 -5.257 71.732 1.00 31.67 O
ATOM 2 P U A 78 43.197 -4.168 72.525 1.00 31.16 P
ATOM 3 OP1 U A 78 43.896 -4.864 73.628 1.00 31.20 O
ATOM 4 OP2 U A 78 42.309 -3.019 72.815 1.00 32.28 O
ATOM 5 O5' U A 78 44.270 -3.684 71.443 1.00 31.88 O
ATOM 6 C5' U A 78 45.129 -4.622 70.805 1.00 31.33 C
ATOM 7 C4' U A 78 45.560 -4.097 69.450 1.00 31.87 C
ATOM 8 O4' U A 78 44.393 -3.838 68.633 1.00 31.86 O
ATOM 9 C3' U A 78 46.289 -2.764 69.483 1.00 32.00 C
ATOM 10 O3' U A 78 47.662 -2.968 69.789 1.00 32.94 O
ATOM 11 C2' U A 78 46.073 -2.276 68.052 1.00 31.65 C
ATOM 12 O2' U A 78 46.951 -2.877 67.120 1.00 32.11 O
ATOM 13 C1' U A 78 44.640 -2.731 67.783 1.00 31.90 C
ATOM 14 N1 U A 78 43.625 -1.658 68.037 1.00 31.93 N
ATOM 15 C2 U A 78 43.447 -0.675 67.086 1.00 32.38 C
ATOM 16 O2 U A 78 44.070 -0.644 66.038 1.00 34.03 O
ATOM 17 N3 U A 78 42.505 0.273 67.399 1.00 31.80 N
ATOM 18 C4 U A 78 41.739 0.340 68.550 1.00 32.14 C
ATOM 19 O4 U A 78 40.932 1.255 68.691 1.00 31.42 O
ATOM 20 C5 U A 78 41.979 -0.718 69.498 1.00 31.94 C
ATOM 21 C6 U A 78 42.896 -1.654 69.212 1.00 31.85 C
TER
ATOM 1 O3' G B 76 36.387 -4.379 72.641 1.00 33.17 O
ATOM 2 P U B 77 37.630 -3.508 73.157 1.00 33.64 P
ATOM 3 OP1 U B 77 37.879 -3.888 74.566 1.00 32.72 O
ATOM 4 OP2 U B 77 37.395 -2.088 72.811 1.00 33.24 O
ATOM 5 O5' U B 77 38.837 -4.024 72.246 1.00 32.98 O
ATOM 6 C5' U B 77 39.194 -5.398 72.252 1.00 32.49 C
ATOM 7 C4' U B 77 40.063 -5.722 71.050 1.00 32.02 C
ATOM 8 O4' U B 77 39.319 -5.506 69.824 1.00 31.67 O
ATOM 9 C3' U B 77 41.287 -4.839 70.878 1.00 31.68 C
ATOM 10 O3' U B 77 42.337 -5.257 71.732 1.00 31.67 O
ATOM 11 C2' U B 77 41.610 -5.115 69.419 1.00 31.84 C
ATOM 12 O2' U B 77 42.195 -6.392 69.242 1.00 31.41 O
ATOM 13 C1' U B 77 40.211 -5.073 68.811 1.00 31.45 C
ATOM 14 N1 U B 77 39.809 -3.711 68.326 1.00 31.26 N
ATOM 15 C2 U B 77 40.327 -3.258 67.130 1.00 31.40 C
ATOM 16 O2 U B 77 41.095 -3.913 66.454 1.00 31.85 O
ATOM 17 N3 U B 77 39.914 -2.009 66.745 1.00 30.78 N
ATOM 18 C4 U B 77 39.047 -1.179 67.427 1.00 31.53 C
ATOM 19 O4 U B 77 38.771 -0.082 66.952 1.00 31.77 O
ATOM 20 C5 U B 77 38.545 -1.713 68.669 1.00 31.50 C
ATOM 21 C6 U B 77 38.933 -2.935 69.061 1.00 30.76 C
ATOM 22 P U B 78 43.197 -4.168 72.525 1.00 31.16 P
ATOM 23 OP1 U B 78 43.896 -4.864 73.628 1.00 31.20 O
ATOM 24 OP2 U B 78 42.309 -3.019 72.815 1.00 32.28 O
ATOM 25 O5' U B 78 44.270 -3.684 71.443 1.00 31.88 O
TER
ATOM 2 P U A 78 43.197 -4.168 72.525 1.00 31.16 P
ATOM 3 OP1 U A 78 43.896 -4.864 73.628 1.00 31.20 O
ATOM 4 OP2 U A 78 42.309 -3.019 72.815 1.00 32.28 O
ATOM 5 O5' U A 78 44.270 -3.684 71.443 1.00 31.88 O
ATOM 6 C5' U A 78 45.129 -4.622 70.805 1.00 31.33 C
ATOM 7 C4' U A 78 45.560 -4.097 69.450 1.00 31.87 C
ATOM 8 O4' U A 78 44.393 -3.838 68.633 1.00 31.86 O
ATOM 9 C3' U A 78 46.289 -2.764 69.483 1.00 32.00 C
ATOM 10 O3' U A 78 47.662 -2.968 69.789 1.00 32.94 O
ATOM 11 C2' U A 78 46.073 -2.276 68.052 1.00 31.65 C
ATOM 12 O2' U A 78 46.951 -2.877 67.120 1.00 32.11 O
ATOM 13 C1' U A 78 44.640 -2.731 67.783 1.00 31.90 C
ATOM 14 N1 U A 78 43.625 -1.658 68.037 1.00 31.93 N
ATOM 15 C2 U A 78 43.447 -0.675 67.086 1.00 32.38 C
ATOM 16 O2 U A 78 44.070 -0.644 66.038 1.00 34.03 O
ATOM 17 N3 U A 78 42.505 0.273 67.399 1.00 31.80 N
ATOM 18 C4 U A 78 41.739 0.340 68.550 1.00 32.14 C
ATOM 19 O4 U A 78 40.932 1.255 68.691 1.00 31.42 O
ATOM 20 C5 U A 78 41.979 -0.718 69.498 1.00 31.94 C
ATOM 21 C6 U A 78 42.896 -1.654 69.212 1.00 31.85 C
TER
ATOM 1 O3' G B 76 36.387 -4.379 72.641 1.00 33.17 O
ATOM 2 P U B 77 37.630 -3.508 73.157 1.00 33.64 P
ATOM 3 OP1 U B 77 37.879 -3.888 74.566 1.00 32.72 O
ATOM 4 OP2 U B 77 37.395 -2.088 72.811 1.00 33.24 O
ATOM 5 O5' U B 77 38.837 -4.024 72.246 1.00 32.98 O
ATOM 6 C5' U B 77 39.194 -5.398 72.252 1.00 32.49 C
ATOM 7 C4' U B 77 40.063 -5.722 71.050 1.00 32.02 C
ATOM 8 O4' U B 77 39.319 -5.506 69.824 1.00 31.67 O
ATOM 9 C3' U B 77 41.287 -4.839 70.878 1.00 31.68 C
ATOM 10 O3' U B 77 42.337 -5.257 71.732 1.00 31.67 O
ATOM 11 C2' U B 77 41.610 -5.115 69.419 1.00 31.84 C
ATOM 12 O2' U B 77 42.195 -6.392 69.242 1.00 31.41 O
ATOM 13 C1' U B 77 40.211 -5.073 68.811 1.00 31.45 C
ATOM 14 N1 U B 77 39.809 -3.711 68.326 1.00 31.26 N
ATOM 15 C2 U B 77 40.327 -3.258 67.130 1.00 31.40 C
ATOM 16 O2 U B 77 41.095 -3.913 66.454 1.00 31.85 O
ATOM 17 N3 U B 77 39.914 -2.009 66.745 1.00 30.78 N
ATOM 18 C4 U B 77 39.047 -1.179 67.427 1.00 31.53 C
ATOM 19 O4 U B 77 38.771 -0.082 66.952 1.00 31.77 O
ATOM 20 C5 U B 77 38.545 -1.713 68.669 1.00 31.50 C
ATOM 21 C6 U B 77 38.933 -2.935 69.061 1.00 30.76 C
ATOM 22 P U B 78 43.197 -4.168 72.525 1.00 31.16 P
ATOM 23 OP1 U B 78 43.896 -4.864 73.628 1.00 31.20 O
ATOM 24 OP2 U B 78 42.309 -3.019 72.815 1.00 32.28 O
ATOM 25 O5' U B 78 44.270 -3.684 71.443 1.00 31.88 O
TER
Atoms:
C4: (41.739,0.340,68.550)
N3: (42.505,0.273,67.399)
OP1: (43.896,-4.864,73.628)
OP2: (42.309,-3.019,72.815)
C2: (43.447,-0.675,67.086)
C1': (44.640,-2.731,67.783)
C3': (46.289,-2.764,69.483)
O5': (44.270,-3.684,71.443)
O4': (44.393,-3.838,68.633)
C5': (45.129,-4.622,70.805)
P: (43.197,-4.168,72.525)
C4': (45.560,-4.097,69.450)
C2': (46.073,-2.276,68.052)
O2': (46.951,-2.877,67.120)
N1: (43.625,-1.658,68.037)
O4: (40.932,1.255,68.691)
O2: (44.070,-0.644,66.038)
C6: (42.896,-1.654,69.212)
C5: (41.979,-0.718,69.498)
O3': (47.662,-2.968,69.789)
N3: (42.505,0.273,67.399)
OP1: (43.896,-4.864,73.628)
OP2: (42.309,-3.019,72.815)
C2: (43.447,-0.675,67.086)
C1': (44.640,-2.731,67.783)
C3': (46.289,-2.764,69.483)
O5': (44.270,-3.684,71.443)
O4': (44.393,-3.838,68.633)
C5': (45.129,-4.622,70.805)
P: (43.197,-4.168,72.525)
C4': (45.560,-4.097,69.450)
C2': (46.073,-2.276,68.052)
O2': (46.951,-2.877,67.120)
N1: (43.625,-1.658,68.037)
O4: (40.932,1.255,68.691)
O2: (44.070,-0.644,66.038)
C6: (42.896,-1.654,69.212)
C5: (41.979,-0.718,69.498)
O3': (47.662,-2.968,69.789)
C4: (39.047,-1.179,67.427)
N3: (39.914,-2.009,66.745)
OP1: (37.879,-3.888,74.566)
OP2: (37.395,-2.088,72.811)
C2: (40.327,-3.258,67.130)
C1': (40.211,-5.073,68.811)
C3': (41.287,-4.839,70.878)
O5': (38.837,-4.024,72.246)
O4': (39.319,-5.506,69.824)
C5': (39.194,-5.398,72.252)
P: (37.630,-3.508,73.157)
C4': (40.063,-5.722,71.050)
C2': (41.610,-5.115,69.419)
O2': (42.195,-6.392,69.242)
N1: (39.809,-3.711,68.326)
O4: (38.771,-0.082,66.952)
O2: (41.095,-3.913,66.454)
C6: (38.933,-2.935,69.061)
C5: (38.545,-1.713,68.669)
O3': (42.337,-5.257,71.732)
N3: (39.914,-2.009,66.745)
OP1: (37.879,-3.888,74.566)
OP2: (37.395,-2.088,72.811)
C2: (40.327,-3.258,67.130)
C1': (40.211,-5.073,68.811)
C3': (41.287,-4.839,70.878)
O5': (38.837,-4.024,72.246)
O4': (39.319,-5.506,69.824)
C5': (39.194,-5.398,72.252)
P: (37.630,-3.508,73.157)
C4': (40.063,-5.722,71.050)
C2': (41.610,-5.115,69.419)
O2': (42.195,-6.392,69.242)
N1: (39.809,-3.711,68.326)
O4: (38.771,-0.082,66.952)
O2: (41.095,-3.913,66.454)
C6: (38.933,-2.935,69.061)
C5: (38.545,-1.713,68.669)
O3': (42.337,-5.257,71.732)
Image (generated by PyMOL):