Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:E26:E28
Extra
PDB:
ATOM 1 O3' G A 25 -23.721 -15.521 24.922 1.00 15.87 O
ATOM 2 P U A 26 -24.172 -16.298 26.251 1.00 17.39 P
ATOM 3 OP1 U A 26 -25.429 -15.712 26.791 1.00 21.04 O
ATOM 4 OP2 U A 26 -22.999 -16.452 27.149 1.00 13.27 O
ATOM 5 O5' U A 26 -24.527 -17.742 25.682 1.00 19.82 O
ATOM 6 C5' U A 26 -24.029 -18.907 26.326 1.00 19.60 C
ATOM 7 C4' U A 26 -23.584 -19.935 25.311 1.00 15.94 C
ATOM 8 O4' U A 26 -23.004 -19.276 24.148 1.00 15.10 O
ATOM 9 C3' U A 26 -22.511 -20.884 25.826 1.00 16.89 C
ATOM 10 O3' U A 26 -22.669 -22.156 25.225 1.00 16.13 O
ATOM 11 C2' U A 26 -21.236 -20.222 25.327 1.00 17.39 C
ATOM 12 O2' U A 26 -20.126 -21.089 25.226 1.00 22.37 O
ATOM 13 C1' U A 26 -21.695 -19.757 23.953 1.00 18.79 C
ATOM 14 N1 U A 26 -20.873 -18.698 23.362 1.00 20.51 N
ATOM 15 C2 U A 26 -19.829 -19.091 22.570 1.00 18.39 C
ATOM 16 O2 U A 26 -19.577 -20.260 22.345 1.00 33.39 O
ATOM 17 N3 U A 26 -19.085 -18.072 22.043 1.00 21.42 N
ATOM 18 C4 U A 26 -19.277 -16.726 22.225 1.00 21.27 C
ATOM 19 O4 U A 26 -18.494 -15.930 21.711 1.00 20.23 O
ATOM 20 C5 U A 26 -20.386 -16.395 23.056 1.00 22.33 C
ATOM 21 C6 U A 26 -21.130 -17.374 23.585 1.00 24.86 C
ATOM 22 P G A 27 -23.904 -23.082 25.655 1.00 17.22 P
ATOM 23 OP1 G A 27 -24.498 -22.444 26.854 1.00 17.57 O
ATOM 24 OP2 G A 27 -23.474 -24.505 25.728 1.00 17.64 O
ATOM 25 O5' G A 27 -24.897 -22.933 24.416 1.00 16.86 O
TER
ATOM 1 O3' G B 27 -25.494 -26.200 22.820 1.00 10.04 O
ATOM 2 P C B 28 -24.202 -27.110 22.588 1.00 13.61 P
ATOM 3 OP1 C B 28 -24.560 -28.530 22.813 1.00 15.23 O
ATOM 4 OP2 C B 28 -23.133 -26.495 23.406 1.00 14.27 O
ATOM 5 O5' C B 28 -23.863 -26.926 21.036 1.00 13.23 O
ATOM 6 C5' C B 28 -24.562 -27.665 20.034 1.00 12.68 C
ATOM 7 C4' C B 28 -24.039 -27.324 18.654 1.00 14.86 C
ATOM 8 O4' C B 28 -24.236 -25.917 18.369 1.00 16.43 O
ATOM 9 C3' C B 28 -22.548 -27.516 18.441 1.00 16.54 C
ATOM 10 O3' C B 28 -22.228 -28.882 18.250 1.00 19.85 O
ATOM 11 C2' C B 28 -22.274 -26.643 17.216 1.00 16.00 C
ATOM 12 O2' C B 28 -22.576 -27.222 15.962 1.00 16.21 O
ATOM 13 C1' C B 28 -23.243 -25.484 17.452 1.00 15.64 C
ATOM 14 N1 C B 28 -22.579 -24.298 17.990 1.00 15.67 N
ATOM 15 C2 C B 28 -22.074 -23.367 17.093 1.00 17.15 C
ATOM 16 O2 C B 28 -22.173 -23.600 15.879 1.00 21.03 O
ATOM 17 N3 C B 28 -21.485 -22.245 17.558 1.00 16.75 N
ATOM 18 C4 C B 28 -21.377 -22.052 18.869 1.00 16.75 C
ATOM 19 N4 C B 28 -20.797 -20.926 19.289 1.00 16.65 N
ATOM 20 C5 C B 28 -21.861 -23.005 19.811 1.00 16.89 C
ATOM 21 C6 C B 28 -22.456 -24.102 19.332 1.00 14.46 C
ATOM 22 P G B 29 -20.707 -29.369 18.407 1.00 21.45 P
ATOM 23 OP1 G B 29 -20.016 -28.990 17.139 1.00 23.89 O
ATOM 24 OP2 G B 29 -20.715 -30.784 18.852 1.00 24.76 O
ATOM 25 O5' G B 29 -20.113 -28.501 19.603 1.00 17.74 O
TER
ATOM 2 P U A 26 -24.172 -16.298 26.251 1.00 17.39 P
ATOM 3 OP1 U A 26 -25.429 -15.712 26.791 1.00 21.04 O
ATOM 4 OP2 U A 26 -22.999 -16.452 27.149 1.00 13.27 O
ATOM 5 O5' U A 26 -24.527 -17.742 25.682 1.00 19.82 O
ATOM 6 C5' U A 26 -24.029 -18.907 26.326 1.00 19.60 C
ATOM 7 C4' U A 26 -23.584 -19.935 25.311 1.00 15.94 C
ATOM 8 O4' U A 26 -23.004 -19.276 24.148 1.00 15.10 O
ATOM 9 C3' U A 26 -22.511 -20.884 25.826 1.00 16.89 C
ATOM 10 O3' U A 26 -22.669 -22.156 25.225 1.00 16.13 O
ATOM 11 C2' U A 26 -21.236 -20.222 25.327 1.00 17.39 C
ATOM 12 O2' U A 26 -20.126 -21.089 25.226 1.00 22.37 O
ATOM 13 C1' U A 26 -21.695 -19.757 23.953 1.00 18.79 C
ATOM 14 N1 U A 26 -20.873 -18.698 23.362 1.00 20.51 N
ATOM 15 C2 U A 26 -19.829 -19.091 22.570 1.00 18.39 C
ATOM 16 O2 U A 26 -19.577 -20.260 22.345 1.00 33.39 O
ATOM 17 N3 U A 26 -19.085 -18.072 22.043 1.00 21.42 N
ATOM 18 C4 U A 26 -19.277 -16.726 22.225 1.00 21.27 C
ATOM 19 O4 U A 26 -18.494 -15.930 21.711 1.00 20.23 O
ATOM 20 C5 U A 26 -20.386 -16.395 23.056 1.00 22.33 C
ATOM 21 C6 U A 26 -21.130 -17.374 23.585 1.00 24.86 C
ATOM 22 P G A 27 -23.904 -23.082 25.655 1.00 17.22 P
ATOM 23 OP1 G A 27 -24.498 -22.444 26.854 1.00 17.57 O
ATOM 24 OP2 G A 27 -23.474 -24.505 25.728 1.00 17.64 O
ATOM 25 O5' G A 27 -24.897 -22.933 24.416 1.00 16.86 O
TER
ATOM 1 O3' G B 27 -25.494 -26.200 22.820 1.00 10.04 O
ATOM 2 P C B 28 -24.202 -27.110 22.588 1.00 13.61 P
ATOM 3 OP1 C B 28 -24.560 -28.530 22.813 1.00 15.23 O
ATOM 4 OP2 C B 28 -23.133 -26.495 23.406 1.00 14.27 O
ATOM 5 O5' C B 28 -23.863 -26.926 21.036 1.00 13.23 O
ATOM 6 C5' C B 28 -24.562 -27.665 20.034 1.00 12.68 C
ATOM 7 C4' C B 28 -24.039 -27.324 18.654 1.00 14.86 C
ATOM 8 O4' C B 28 -24.236 -25.917 18.369 1.00 16.43 O
ATOM 9 C3' C B 28 -22.548 -27.516 18.441 1.00 16.54 C
ATOM 10 O3' C B 28 -22.228 -28.882 18.250 1.00 19.85 O
ATOM 11 C2' C B 28 -22.274 -26.643 17.216 1.00 16.00 C
ATOM 12 O2' C B 28 -22.576 -27.222 15.962 1.00 16.21 O
ATOM 13 C1' C B 28 -23.243 -25.484 17.452 1.00 15.64 C
ATOM 14 N1 C B 28 -22.579 -24.298 17.990 1.00 15.67 N
ATOM 15 C2 C B 28 -22.074 -23.367 17.093 1.00 17.15 C
ATOM 16 O2 C B 28 -22.173 -23.600 15.879 1.00 21.03 O
ATOM 17 N3 C B 28 -21.485 -22.245 17.558 1.00 16.75 N
ATOM 18 C4 C B 28 -21.377 -22.052 18.869 1.00 16.75 C
ATOM 19 N4 C B 28 -20.797 -20.926 19.289 1.00 16.65 N
ATOM 20 C5 C B 28 -21.861 -23.005 19.811 1.00 16.89 C
ATOM 21 C6 C B 28 -22.456 -24.102 19.332 1.00 14.46 C
ATOM 22 P G B 29 -20.707 -29.369 18.407 1.00 21.45 P
ATOM 23 OP1 G B 29 -20.016 -28.990 17.139 1.00 23.89 O
ATOM 24 OP2 G B 29 -20.715 -30.784 18.852 1.00 24.76 O
ATOM 25 O5' G B 29 -20.113 -28.501 19.603 1.00 17.74 O
TER
Atoms:
C4: (-19.277,-16.726,22.225)
N3: (-19.085,-18.072,22.043)
OP1: (-25.429,-15.712,26.791)
OP2: (-22.999,-16.452,27.149)
C2: (-19.829,-19.091,22.570)
C1': (-21.695,-19.757,23.953)
C3': (-22.511,-20.884,25.826)
O5': (-24.527,-17.742,25.682)
O4': (-23.004,-19.276,24.148)
C5': (-24.029,-18.907,26.326)
P: (-24.172,-16.298,26.251)
C4': (-23.584,-19.935,25.311)
C2': (-21.236,-20.222,25.327)
O2': (-20.126,-21.089,25.226)
N1: (-20.873,-18.698,23.362)
O4: (-18.494,-15.930,21.711)
O2: (-19.577,-20.260,22.345)
C6: (-21.130,-17.374,23.585)
C5: (-20.386,-16.395,23.056)
O3': (-22.669,-22.156,25.225)
N3: (-19.085,-18.072,22.043)
OP1: (-25.429,-15.712,26.791)
OP2: (-22.999,-16.452,27.149)
C2: (-19.829,-19.091,22.570)
C1': (-21.695,-19.757,23.953)
C3': (-22.511,-20.884,25.826)
O5': (-24.527,-17.742,25.682)
O4': (-23.004,-19.276,24.148)
C5': (-24.029,-18.907,26.326)
P: (-24.172,-16.298,26.251)
C4': (-23.584,-19.935,25.311)
C2': (-21.236,-20.222,25.327)
O2': (-20.126,-21.089,25.226)
N1: (-20.873,-18.698,23.362)
O4: (-18.494,-15.930,21.711)
O2: (-19.577,-20.260,22.345)
C6: (-21.130,-17.374,23.585)
C5: (-20.386,-16.395,23.056)
O3': (-22.669,-22.156,25.225)
C2: (-22.074,-23.367,17.093)
OP1: (-24.560,-28.530,22.813)
OP2: (-23.133,-26.495,23.406)
C4: (-21.377,-22.052,18.869)
O5': (-23.863,-26.926,21.036)
C3': (-22.548,-27.516,18.441)
C1': (-23.243,-25.484,17.452)
O4': (-24.236,-25.917,18.369)
C5': (-24.562,-27.665,20.034)
P: (-24.202,-27.110,22.588)
O2: (-22.173,-23.600,15.879)
C4': (-24.039,-27.324,18.654)
C2': (-22.274,-26.643,17.216)
O2': (-22.576,-27.222,15.962)
N1: (-22.579,-24.298,17.990)
N3: (-21.485,-22.245,17.558)
N4: (-20.797,-20.926,19.289)
C6: (-22.456,-24.102,19.332)
C5: (-21.861,-23.005,19.811)
O3': (-22.228,-28.882,18.250)
OP1: (-24.560,-28.530,22.813)
OP2: (-23.133,-26.495,23.406)
C4: (-21.377,-22.052,18.869)
O5': (-23.863,-26.926,21.036)
C3': (-22.548,-27.516,18.441)
C1': (-23.243,-25.484,17.452)
O4': (-24.236,-25.917,18.369)
C5': (-24.562,-27.665,20.034)
P: (-24.202,-27.110,22.588)
O2: (-22.173,-23.600,15.879)
C4': (-24.039,-27.324,18.654)
C2': (-22.274,-26.643,17.216)
O2': (-22.576,-27.222,15.962)
N1: (-22.579,-24.298,17.990)
N3: (-21.485,-22.245,17.558)
N4: (-20.797,-20.926,19.289)
C6: (-22.456,-24.102,19.332)
C5: (-21.861,-23.005,19.811)
O3': (-22.228,-28.882,18.250)
Image (generated by PyMOL):