ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1992:12384

Extra

PDB:
ATOM 1 O3' A A 991 22.824 -37.320 32.542 1.00 42.09 O
ATOM 2 P A A 992 21.690 -38.370 32.197 1.00 39.79 P
ATOM 3 OP1 A A 992 22.362 -39.528 31.465 1.00 40.12 O
ATOM 4 OP2 A A 992 20.612 -37.625 31.509 1.00 39.94 O
ATOM 5 O5' A A 992 21.198 -38.827 33.641 1.00 39.60 O
ATOM 6 C5' A A 992 21.862 -39.867 34.343 1.00 39.57 C
ATOM 7 C4' A A 992 21.422 -39.920 35.774 1.00 39.32 C
ATOM 8 O4' A A 992 21.524 -38.588 36.359 1.00 38.92 O
ATOM 9 C3' A A 992 19.979 -40.301 35.999 1.00 39.50 C
ATOM 10 O3' A A 992 19.756 -41.693 35.935 1.00 39.83 O
ATOM 11 C2' A A 992 19.658 -39.660 37.365 1.00 39.13 C
ATOM 12 O2' A A 992 20.103 -40.467 38.452 1.00 39.02 O
ATOM 13 C1' A A 992 20.515 -38.402 37.329 1.00 38.80 C
ATOM 14 N9 A A 992 19.741 -37.191 37.002 1.00 38.73 N
ATOM 15 C8 A A 992 19.359 -36.657 35.793 1.00 38.93 C
ATOM 16 N7 A A 992 18.669 -35.529 35.936 1.00 38.79 N
ATOM 17 C5 A A 992 18.604 -35.322 37.306 1.00 38.48 C
ATOM 18 C6 A A 992 18.047 -34.357 38.129 1.00 38.22 C
ATOM 19 N6 A A 992 17.364 -33.276 37.706 1.00 38.22 N
ATOM 20 N1 A A 992 18.228 -34.496 39.471 1.00 37.96 N
ATOM 21 C2 A A 992 18.840 -35.512 40.009 1.00 37.95 C
ATOM 22 N3 A A 992 19.379 -36.485 39.323 1.00 38.18 N
ATOM 23 C4 A A 992 19.248 -36.334 37.980 1.00 38.44 C
ATOM 24 P C A 993 18.781 -42.292 34.797 1.00 43.67 P
ATOM 25 OP1 C A 993 17.812 -41.247 34.458 1.00 43.65 O
ATOM 26 OP2 C A 993 18.264 -43.572 35.268 1.00 43.90 O
ATOM 27 O5' C A 993 19.768 -42.552 33.591 1.00 43.88 O
TER

ATOM 1 O3' U B2383 24.789 -46.679 44.290 1.00 41.19 O
ATOM 2 P G B2384 25.746 -45.894 43.264 1.00 36.71 P
ATOM 3 OP1 G B2384 26.250 -46.883 42.306 1.00 37.07 O
ATOM 4 OP2 G B2384 26.728 -45.103 44.064 1.00 36.32 O
ATOM 5 O5' G B2384 24.742 -44.923 42.548 1.00 36.69 O
ATOM 6 C5' G B2384 23.934 -45.360 41.494 1.00 37.05 C
ATOM 7 C4' G B2384 23.182 -44.205 40.926 1.00 36.96 C
ATOM 8 O4' G B2384 22.361 -43.606 41.944 1.00 36.72 O
ATOM 9 C3' G B2384 24.016 -43.048 40.474 1.00 36.71 C
ATOM 10 O3' G B2384 24.655 -43.295 39.251 1.00 36.93 O
ATOM 11 C2' G B2384 22.977 -41.976 40.378 1.00 36.59 C
ATOM 12 O2' G B2384 22.166 -42.228 39.241 1.00 36.94 O
ATOM 13 C1' G B2384 22.154 -42.257 41.627 1.00 36.51 C
ATOM 14 N9 G B2384 22.588 -41.411 42.738 1.00 36.09 N
ATOM 15 C8 G B2384 23.458 -41.691 43.751 1.00 35.90 C
ATOM 16 N7 G B2384 23.721 -40.659 44.529 1.00 35.54 N
ATOM 17 C5 G B2384 22.982 -39.637 43.966 1.00 35.50 C
ATOM 18 C6 G B2384 22.870 -38.291 44.342 1.00 35.19 C
ATOM 19 O6 G B2384 23.349 -37.684 45.257 1.00 34.89 O
ATOM 20 N1 G B2384 22.003 -37.585 43.557 1.00 35.27 N
ATOM 21 C2 G B2384 21.321 -38.075 42.492 1.00 35.61 C
ATOM 22 N2 G B2384 20.588 -37.144 41.899 1.00 35.62 N
ATOM 23 N3 G B2384 21.430 -39.338 42.092 1.00 35.91 N
ATOM 24 C4 G B2384 22.262 -40.076 42.878 1.00 35.83 C
ATOM 25 P U B2385 26.008 -42.566 38.909 1.00 36.14 P
ATOM 26 OP1 U B2385 26.457 -43.063 37.614 1.00 36.47 O
ATOM 27 OP2 U B2385 26.884 -42.748 40.108 1.00 35.89 O
ATOM 28 O5' U B2385 25.596 -41.027 38.791 1.00 35.88 O
TER

Atoms:
OP1: (22.362,-39.528,31.465)
OP2: (20.612,-37.625,31.509)
C3': (19.979,-40.301,35.999)
C1': (20.515,-38.402,37.329)
C5': (21.862,-39.867,34.343)
O4': (21.524,-38.588,36.359)
C8: (19.359,-36.657,35.793)
O2': (20.103,-40.467,38.452)
C6: (18.047,-34.357,38.129)
C5: (18.604,-35.322,37.306)
C4: (19.248,-36.334,37.980)
P: (21.690,-38.370,32.197)
C4': (21.422,-39.920,35.774)
C2': (19.658,-39.660,37.365)
C2: (18.840,-35.512,40.009)
N1: (18.228,-34.496,39.471)
N3: (19.379,-36.485,39.323)
N6: (17.364,-33.276,37.706)
N7: (18.669,-35.529,35.936)
N9: (19.741,-37.191,37.002)
O5': (21.198,-38.827,33.641)
O3': (19.756,-41.693,35.935)
OP1: (26.250,-46.883,42.306)
OP2: (26.728,-45.103,44.064)
C3': (24.016,-43.048,40.474)
C1': (22.154,-42.257,41.627)
C5': (23.934,-45.360,41.494)
O6: (23.349,-37.684,45.257)
O4': (22.361,-43.606,41.944)
C8: (23.458,-41.691,43.751)
C2: (21.321,-38.075,42.492)
C6: (22.870,-38.291,44.342)
C5: (22.982,-39.637,43.966)
C4: (22.262,-40.076,42.878)
P: (25.746,-45.894,43.264)
C4': (23.182,-44.205,40.926)
C2': (22.977,-41.976,40.378)
O2': (22.166,-42.228,39.241)
N1: (22.003,-37.585,43.557)
N2: (20.588,-37.144,41.899)
N3: (21.430,-39.338,42.092)
N7: (23.721,-40.659,44.529)
N9: (22.588,-41.411,42.738)
O5': (24.742,-44.923,42.548)
O3': (24.655,-43.295,39.251)
Image (generated by PyMOL):
PyMOL image
show in jmol