Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02331:02018
Extra
PDB:
ATOM 1 O3' G A2330 56.989 115.023 110.889 1.00 40.66 O
ATOM 2 P A A2331 57.043 113.845 111.982 1.00 43.26 P
ATOM 3 OP1 A A2331 56.145 114.224 113.114 1.00 41.09 O
ATOM 4 OP2 A A2331 58.466 113.511 112.247 1.00 42.21 O
ATOM 5 O5' A A2331 56.426 112.585 111.233 1.00 41.47 O
ATOM 6 C5' A A2331 55.070 112.581 110.793 1.00 37.81 C
ATOM 7 C4' A A2331 54.807 111.347 109.978 1.00 39.55 C
ATOM 8 O4' A A2331 55.626 111.366 108.777 1.00 38.64 O
ATOM 9 C3' A A2331 55.182 110.041 110.655 1.00 39.57 C
ATOM 10 O3' A A2331 54.165 109.623 111.556 1.00 41.07 O
ATOM 11 C2' A A2331 55.342 109.105 109.464 1.00 40.69 C
ATOM 12 O2' A A2331 54.100 108.667 108.943 1.00 41.64 O
ATOM 13 C1' A A2331 56.007 110.038 108.446 1.00 39.71 C
ATOM 14 N9 A A2331 57.469 109.954 108.462 1.00 37.51 N
ATOM 15 C8 A A2331 58.373 110.871 108.935 1.00 38.16 C
ATOM 16 N7 A A2331 59.623 110.504 108.787 1.00 38.08 N
ATOM 17 C5 A A2331 59.537 109.262 108.180 1.00 36.54 C
ATOM 18 C6 A A2331 60.515 108.356 107.738 1.00 37.83 C
ATOM 19 N6 A A2331 61.827 108.572 107.843 1.00 37.34 N
ATOM 20 N1 A A2331 60.094 107.206 107.169 1.00 38.66 N
ATOM 21 C2 A A2331 58.778 106.995 107.050 1.00 38.78 C
ATOM 22 N3 A A2331 57.762 107.775 107.420 1.00 38.27 N
ATOM 23 C4 A A2331 58.216 108.907 107.982 1.00 37.04 C
ATOM 24 P G A2332 54.566 108.889 112.926 1.00 39.30 P
ATOM 25 OP1 G A2332 53.347 108.892 113.770 1.00 38.22 O
ATOM 26 OP2 G A2332 55.819 109.494 113.444 1.00 39.44 O
ATOM 27 O5' G A2332 54.900 107.397 112.483 1.00 38.43 O
TER
ATOM 1 O3' C B2017 48.729 111.067 103.249 1.00 40.63 O
ATOM 2 P G B2018 47.876 111.574 104.515 1.00 43.16 P
ATOM 3 OP1 G B2018 47.164 110.422 105.139 1.00 43.11 O
ATOM 4 OP2 G B2018 47.114 112.783 104.118 1.00 43.31 O
ATOM 5 O5' G B2018 49.011 112.079 105.500 1.00 42.20 O
ATOM 6 C5' G B2018 48.926 111.884 106.911 1.00 41.28 C
ATOM 7 C4' G B2018 50.298 111.604 107.455 1.00 40.77 C
ATOM 8 O4' G B2018 50.576 110.183 107.369 1.00 41.49 O
ATOM 9 C3' G B2018 51.429 112.307 106.712 1.00 41.15 C
ATOM 10 O3' G B2018 52.431 112.706 107.630 1.00 42.00 O
ATOM 11 C2' G B2018 51.935 111.219 105.767 1.00 40.45 C
ATOM 12 O2' G B2018 53.284 111.381 105.378 1.00 40.58 O
ATOM 13 C1' G B2018 51.757 109.971 106.625 1.00 39.73 C
ATOM 14 N9 G B2018 51.597 108.729 105.871 1.00 39.74 N
ATOM 15 C8 G B2018 50.555 108.379 105.044 1.00 37.93 C
ATOM 16 N7 G B2018 50.685 107.184 104.533 1.00 36.72 N
ATOM 17 C5 G B2018 51.886 106.717 105.050 1.00 38.06 C
ATOM 18 C6 G B2018 52.545 105.475 104.871 1.00 38.03 C
ATOM 19 O6 G B2018 52.191 104.501 104.197 1.00 39.66 O
ATOM 20 N1 G B2018 53.735 105.421 105.587 1.00 38.87 N
ATOM 21 C2 G B2018 54.227 106.425 106.378 1.00 37.89 C
ATOM 22 N2 G B2018 55.387 106.177 106.992 1.00 36.83 N
ATOM 23 N3 G B2018 53.625 107.584 106.557 1.00 38.76 N
ATOM 24 C4 G B2018 52.466 107.662 105.870 1.00 39.07 C
ATOM 25 P G B2019 52.839 114.254 107.730 1.00 38.86 P
ATOM 26 OP1 G B2019 53.350 114.688 106.413 1.00 38.61 O
ATOM 27 OP2 G B2019 53.674 114.429 108.935 1.00 43.74 O
ATOM 28 O5' G B2019 51.474 115.016 108.027 1.00 40.08 O
TER
ATOM 2 P A A2331 57.043 113.845 111.982 1.00 43.26 P
ATOM 3 OP1 A A2331 56.145 114.224 113.114 1.00 41.09 O
ATOM 4 OP2 A A2331 58.466 113.511 112.247 1.00 42.21 O
ATOM 5 O5' A A2331 56.426 112.585 111.233 1.00 41.47 O
ATOM 6 C5' A A2331 55.070 112.581 110.793 1.00 37.81 C
ATOM 7 C4' A A2331 54.807 111.347 109.978 1.00 39.55 C
ATOM 8 O4' A A2331 55.626 111.366 108.777 1.00 38.64 O
ATOM 9 C3' A A2331 55.182 110.041 110.655 1.00 39.57 C
ATOM 10 O3' A A2331 54.165 109.623 111.556 1.00 41.07 O
ATOM 11 C2' A A2331 55.342 109.105 109.464 1.00 40.69 C
ATOM 12 O2' A A2331 54.100 108.667 108.943 1.00 41.64 O
ATOM 13 C1' A A2331 56.007 110.038 108.446 1.00 39.71 C
ATOM 14 N9 A A2331 57.469 109.954 108.462 1.00 37.51 N
ATOM 15 C8 A A2331 58.373 110.871 108.935 1.00 38.16 C
ATOM 16 N7 A A2331 59.623 110.504 108.787 1.00 38.08 N
ATOM 17 C5 A A2331 59.537 109.262 108.180 1.00 36.54 C
ATOM 18 C6 A A2331 60.515 108.356 107.738 1.00 37.83 C
ATOM 19 N6 A A2331 61.827 108.572 107.843 1.00 37.34 N
ATOM 20 N1 A A2331 60.094 107.206 107.169 1.00 38.66 N
ATOM 21 C2 A A2331 58.778 106.995 107.050 1.00 38.78 C
ATOM 22 N3 A A2331 57.762 107.775 107.420 1.00 38.27 N
ATOM 23 C4 A A2331 58.216 108.907 107.982 1.00 37.04 C
ATOM 24 P G A2332 54.566 108.889 112.926 1.00 39.30 P
ATOM 25 OP1 G A2332 53.347 108.892 113.770 1.00 38.22 O
ATOM 26 OP2 G A2332 55.819 109.494 113.444 1.00 39.44 O
ATOM 27 O5' G A2332 54.900 107.397 112.483 1.00 38.43 O
TER
ATOM 1 O3' C B2017 48.729 111.067 103.249 1.00 40.63 O
ATOM 2 P G B2018 47.876 111.574 104.515 1.00 43.16 P
ATOM 3 OP1 G B2018 47.164 110.422 105.139 1.00 43.11 O
ATOM 4 OP2 G B2018 47.114 112.783 104.118 1.00 43.31 O
ATOM 5 O5' G B2018 49.011 112.079 105.500 1.00 42.20 O
ATOM 6 C5' G B2018 48.926 111.884 106.911 1.00 41.28 C
ATOM 7 C4' G B2018 50.298 111.604 107.455 1.00 40.77 C
ATOM 8 O4' G B2018 50.576 110.183 107.369 1.00 41.49 O
ATOM 9 C3' G B2018 51.429 112.307 106.712 1.00 41.15 C
ATOM 10 O3' G B2018 52.431 112.706 107.630 1.00 42.00 O
ATOM 11 C2' G B2018 51.935 111.219 105.767 1.00 40.45 C
ATOM 12 O2' G B2018 53.284 111.381 105.378 1.00 40.58 O
ATOM 13 C1' G B2018 51.757 109.971 106.625 1.00 39.73 C
ATOM 14 N9 G B2018 51.597 108.729 105.871 1.00 39.74 N
ATOM 15 C8 G B2018 50.555 108.379 105.044 1.00 37.93 C
ATOM 16 N7 G B2018 50.685 107.184 104.533 1.00 36.72 N
ATOM 17 C5 G B2018 51.886 106.717 105.050 1.00 38.06 C
ATOM 18 C6 G B2018 52.545 105.475 104.871 1.00 38.03 C
ATOM 19 O6 G B2018 52.191 104.501 104.197 1.00 39.66 O
ATOM 20 N1 G B2018 53.735 105.421 105.587 1.00 38.87 N
ATOM 21 C2 G B2018 54.227 106.425 106.378 1.00 37.89 C
ATOM 22 N2 G B2018 55.387 106.177 106.992 1.00 36.83 N
ATOM 23 N3 G B2018 53.625 107.584 106.557 1.00 38.76 N
ATOM 24 C4 G B2018 52.466 107.662 105.870 1.00 39.07 C
ATOM 25 P G B2019 52.839 114.254 107.730 1.00 38.86 P
ATOM 26 OP1 G B2019 53.350 114.688 106.413 1.00 38.61 O
ATOM 27 OP2 G B2019 53.674 114.429 108.935 1.00 43.74 O
ATOM 28 O5' G B2019 51.474 115.016 108.027 1.00 40.08 O
TER
Atoms:
OP1: (56.145,114.224,113.114)
OP2: (58.466,113.511,112.247)
C3': (55.182,110.041,110.655)
C1': (56.007,110.038,108.446)
C5': (55.070,112.581,110.793)
O4': (55.626,111.366,108.777)
C8: (58.373,110.871,108.935)
O2': (54.100,108.667,108.943)
C6: (60.515,108.356,107.738)
C5: (59.537,109.262,108.180)
C4: (58.216,108.907,107.982)
P: (57.043,113.845,111.982)
C4': (54.807,111.347,109.978)
C2': (55.342,109.105,109.464)
C2: (58.778,106.995,107.050)
N1: (60.094,107.206,107.169)
N3: (57.762,107.775,107.420)
N6: (61.827,108.572,107.843)
N7: (59.623,110.504,108.787)
N9: (57.469,109.954,108.462)
O5': (56.426,112.585,111.233)
O3': (54.165,109.623,111.556)
OP2: (58.466,113.511,112.247)
C3': (55.182,110.041,110.655)
C1': (56.007,110.038,108.446)
C5': (55.070,112.581,110.793)
O4': (55.626,111.366,108.777)
C8: (58.373,110.871,108.935)
O2': (54.100,108.667,108.943)
C6: (60.515,108.356,107.738)
C5: (59.537,109.262,108.180)
C4: (58.216,108.907,107.982)
P: (57.043,113.845,111.982)
C4': (54.807,111.347,109.978)
C2': (55.342,109.105,109.464)
C2: (58.778,106.995,107.050)
N1: (60.094,107.206,107.169)
N3: (57.762,107.775,107.420)
N6: (61.827,108.572,107.843)
N7: (59.623,110.504,108.787)
N9: (57.469,109.954,108.462)
O5': (56.426,112.585,111.233)
O3': (54.165,109.623,111.556)
OP1: (47.164,110.422,105.139)
OP2: (47.114,112.783,104.118)
C3': (51.429,112.307,106.712)
C1': (51.757,109.971,106.625)
C5': (48.926,111.884,106.911)
O6: (52.191,104.501,104.197)
O4': (50.576,110.183,107.369)
C8: (50.555,108.379,105.044)
C2: (54.227,106.425,106.378)
C6: (52.545,105.475,104.871)
C5: (51.886,106.717,105.050)
C4: (52.466,107.662,105.870)
P: (47.876,111.574,104.515)
C4': (50.298,111.604,107.455)
C2': (51.935,111.219,105.767)
O2': (53.284,111.381,105.378)
N1: (53.735,105.421,105.587)
N2: (55.387,106.177,106.992)
N3: (53.625,107.584,106.557)
N7: (50.685,107.184,104.533)
N9: (51.597,108.729,105.871)
O5': (49.011,112.079,105.500)
O3': (52.431,112.706,107.630)
OP2: (47.114,112.783,104.118)
C3': (51.429,112.307,106.712)
C1': (51.757,109.971,106.625)
C5': (48.926,111.884,106.911)
O6: (52.191,104.501,104.197)
O4': (50.576,110.183,107.369)
C8: (50.555,108.379,105.044)
C2: (54.227,106.425,106.378)
C6: (52.545,105.475,104.871)
C5: (51.886,106.717,105.050)
C4: (52.466,107.662,105.870)
P: (47.876,111.574,104.515)
C4': (50.298,111.604,107.455)
C2': (51.935,111.219,105.767)
O2': (53.284,111.381,105.378)
N1: (53.735,105.421,105.587)
N2: (55.387,106.177,106.992)
N3: (53.625,107.584,106.557)
N7: (50.685,107.184,104.533)
N9: (51.597,108.729,105.871)
O5': (49.011,112.079,105.500)
O3': (52.431,112.706,107.630)
Image (generated by PyMOL):