Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A11:A42
Extra
PDB:
ATOM 1 O3' G A 10 23.517 -1.992 20.085 1.00110.43 O
ATOM 2 P A A 11 23.026 -1.931 21.593 1.00113.46 P
ATOM 3 OP1 A A 11 24.128 -1.310 22.353 1.00114.98 O
ATOM 4 OP2 A A 11 22.452 -3.239 21.991 1.00112.45 O
ATOM 5 O5' A A 11 21.881 -0.839 21.532 1.00115.52 O
ATOM 6 C5' A A 11 22.237 0.489 21.217 1.00118.43 C
ATOM 7 C4' A A 11 21.013 1.203 20.697 1.00120.61 C
ATOM 8 O4' A A 11 20.458 0.470 19.580 1.00120.51 O
ATOM 9 C3' A A 11 19.888 1.278 21.714 1.00122.20 C
ATOM 10 O3' A A 11 20.073 2.413 22.555 1.00125.39 O
ATOM 11 C2' A A 11 18.636 1.367 20.844 1.00121.34 C
ATOM 12 O2' A A 11 18.324 2.700 20.482 1.00120.47 O
ATOM 13 C1' A A 11 19.041 0.530 19.630 1.00121.10 C
ATOM 14 N9 A A 11 18.593 -0.857 19.638 1.00120.88 N
ATOM 15 C8 A A 11 18.841 -1.810 20.585 1.00120.41 C
ATOM 16 N7 A A 11 18.324 -2.984 20.311 1.00120.48 N
ATOM 17 C5 A A 11 17.703 -2.793 19.087 1.00120.67 C
ATOM 18 C6 A A 11 16.969 -3.653 18.240 1.00119.77 C
ATOM 19 N6 A A 11 16.729 -4.933 18.526 1.00118.83 N
ATOM 20 N1 A A 11 16.481 -3.140 17.090 1.00120.03 N
ATOM 21 C2 A A 11 16.718 -1.852 16.801 1.00120.12 C
ATOM 22 N3 A A 11 17.391 -0.943 17.510 1.00120.71 N
ATOM 23 C4 A A 11 17.864 -1.484 18.654 1.00121.32 C
ATOM 24 P G A 12 20.191 2.243 24.142 1.00127.91 P
ATOM 25 OP1 G A 12 21.635 2.155 24.450 1.00127.62 O
ATOM 26 OP2 G A 12 19.261 1.183 24.602 1.00127.82 O
ATOM 27 O5' G A 12 19.574 3.621 24.666 1.00130.05 O
TER
ATOM 1 O3' G B 41 18.521 11.584 18.006 1.00113.17 O
ATOM 2 P G B 42 19.285 10.876 16.796 1.00111.57 P
ATOM 3 OP1 G B 42 20.684 11.376 16.831 1.00110.58 O
ATOM 4 OP2 G B 42 18.456 11.064 15.579 1.00110.86 O
ATOM 5 O5' G B 42 19.250 9.318 17.183 1.00108.93 O
ATOM 6 C5' G B 42 20.325 8.788 17.947 1.00106.28 C
ATOM 7 C4' G B 42 20.124 7.335 18.347 1.00104.00 C
ATOM 8 O4' G B 42 18.742 7.066 18.707 1.00101.79 O
ATOM 9 C3' G B 42 20.482 6.378 17.228 1.00101.81 C
ATOM 10 O3' G B 42 21.879 6.023 17.242 1.00100.22 O
ATOM 11 C2' G B 42 19.570 5.202 17.516 1.00101.99 C
ATOM 12 O2' G B 42 20.244 4.189 18.224 1.00101.38 O
ATOM 13 C1' G B 42 18.376 5.759 18.299 1.00102.96 C
ATOM 14 N9 G B 42 17.121 5.805 17.509 1.00105.56 N
ATOM 15 C8 G B 42 16.432 6.940 17.127 1.00106.70 C
ATOM 16 N7 G B 42 15.352 6.717 16.431 1.00107.03 N
ATOM 17 C5 G B 42 15.305 5.339 16.326 1.00106.33 C
ATOM 18 C6 G B 42 14.347 4.530 15.669 1.00106.38 C
ATOM 19 O6 G B 42 13.350 4.917 15.055 1.00105.63 O
ATOM 20 N1 G B 42 14.637 3.168 15.775 1.00106.01 N
ATOM 21 C2 G B 42 15.730 2.665 16.448 1.00106.88 C
ATOM 22 N2 G B 42 15.870 1.330 16.464 1.00106.78 N
ATOM 23 N3 G B 42 16.635 3.424 17.073 1.00106.99 N
ATOM 24 C4 G B 42 16.373 4.756 16.979 1.00106.14 C
ATOM 25 P C B 43 22.551 5.570 15.868 1.00101.70 P
ATOM 26 OP1 C B 43 24.027 5.458 15.917 1.00100.00 O
ATOM 27 OP2 C B 43 21.935 6.441 14.849 1.00103.20 O
ATOM 28 O5' C B 43 22.000 4.089 15.728 1.00100.75 O
TER
ATOM 2 P A A 11 23.026 -1.931 21.593 1.00113.46 P
ATOM 3 OP1 A A 11 24.128 -1.310 22.353 1.00114.98 O
ATOM 4 OP2 A A 11 22.452 -3.239 21.991 1.00112.45 O
ATOM 5 O5' A A 11 21.881 -0.839 21.532 1.00115.52 O
ATOM 6 C5' A A 11 22.237 0.489 21.217 1.00118.43 C
ATOM 7 C4' A A 11 21.013 1.203 20.697 1.00120.61 C
ATOM 8 O4' A A 11 20.458 0.470 19.580 1.00120.51 O
ATOM 9 C3' A A 11 19.888 1.278 21.714 1.00122.20 C
ATOM 10 O3' A A 11 20.073 2.413 22.555 1.00125.39 O
ATOM 11 C2' A A 11 18.636 1.367 20.844 1.00121.34 C
ATOM 12 O2' A A 11 18.324 2.700 20.482 1.00120.47 O
ATOM 13 C1' A A 11 19.041 0.530 19.630 1.00121.10 C
ATOM 14 N9 A A 11 18.593 -0.857 19.638 1.00120.88 N
ATOM 15 C8 A A 11 18.841 -1.810 20.585 1.00120.41 C
ATOM 16 N7 A A 11 18.324 -2.984 20.311 1.00120.48 N
ATOM 17 C5 A A 11 17.703 -2.793 19.087 1.00120.67 C
ATOM 18 C6 A A 11 16.969 -3.653 18.240 1.00119.77 C
ATOM 19 N6 A A 11 16.729 -4.933 18.526 1.00118.83 N
ATOM 20 N1 A A 11 16.481 -3.140 17.090 1.00120.03 N
ATOM 21 C2 A A 11 16.718 -1.852 16.801 1.00120.12 C
ATOM 22 N3 A A 11 17.391 -0.943 17.510 1.00120.71 N
ATOM 23 C4 A A 11 17.864 -1.484 18.654 1.00121.32 C
ATOM 24 P G A 12 20.191 2.243 24.142 1.00127.91 P
ATOM 25 OP1 G A 12 21.635 2.155 24.450 1.00127.62 O
ATOM 26 OP2 G A 12 19.261 1.183 24.602 1.00127.82 O
ATOM 27 O5' G A 12 19.574 3.621 24.666 1.00130.05 O
TER
ATOM 1 O3' G B 41 18.521 11.584 18.006 1.00113.17 O
ATOM 2 P G B 42 19.285 10.876 16.796 1.00111.57 P
ATOM 3 OP1 G B 42 20.684 11.376 16.831 1.00110.58 O
ATOM 4 OP2 G B 42 18.456 11.064 15.579 1.00110.86 O
ATOM 5 O5' G B 42 19.250 9.318 17.183 1.00108.93 O
ATOM 6 C5' G B 42 20.325 8.788 17.947 1.00106.28 C
ATOM 7 C4' G B 42 20.124 7.335 18.347 1.00104.00 C
ATOM 8 O4' G B 42 18.742 7.066 18.707 1.00101.79 O
ATOM 9 C3' G B 42 20.482 6.378 17.228 1.00101.81 C
ATOM 10 O3' G B 42 21.879 6.023 17.242 1.00100.22 O
ATOM 11 C2' G B 42 19.570 5.202 17.516 1.00101.99 C
ATOM 12 O2' G B 42 20.244 4.189 18.224 1.00101.38 O
ATOM 13 C1' G B 42 18.376 5.759 18.299 1.00102.96 C
ATOM 14 N9 G B 42 17.121 5.805 17.509 1.00105.56 N
ATOM 15 C8 G B 42 16.432 6.940 17.127 1.00106.70 C
ATOM 16 N7 G B 42 15.352 6.717 16.431 1.00107.03 N
ATOM 17 C5 G B 42 15.305 5.339 16.326 1.00106.33 C
ATOM 18 C6 G B 42 14.347 4.530 15.669 1.00106.38 C
ATOM 19 O6 G B 42 13.350 4.917 15.055 1.00105.63 O
ATOM 20 N1 G B 42 14.637 3.168 15.775 1.00106.01 N
ATOM 21 C2 G B 42 15.730 2.665 16.448 1.00106.88 C
ATOM 22 N2 G B 42 15.870 1.330 16.464 1.00106.78 N
ATOM 23 N3 G B 42 16.635 3.424 17.073 1.00106.99 N
ATOM 24 C4 G B 42 16.373 4.756 16.979 1.00106.14 C
ATOM 25 P C B 43 22.551 5.570 15.868 1.00101.70 P
ATOM 26 OP1 C B 43 24.027 5.458 15.917 1.00100.00 O
ATOM 27 OP2 C B 43 21.935 6.441 14.849 1.00103.20 O
ATOM 28 O5' C B 43 22.000 4.089 15.728 1.00100.75 O
TER
Atoms:
OP1: (24.128,-1.310,22.353)
OP2: (22.452,-3.239,21.991)
C3': (19.888,1.278,21.714)
C1': (19.041,0.530,19.630)
C5': (22.237,0.489,21.217)
O4': (20.458,0.470,19.580)
C8: (18.841,-1.810,20.585)
O2': (18.324,2.700,20.482)
C6: (16.969,-3.653,18.240)
C5: (17.703,-2.793,19.087)
C4: (17.864,-1.484,18.654)
P: (23.026,-1.931,21.593)
C4': (21.013,1.203,20.697)
C2': (18.636,1.367,20.844)
C2: (16.718,-1.852,16.801)
N1: (16.481,-3.140,17.090)
N3: (17.391,-0.943,17.510)
N6: (16.729,-4.933,18.526)
N7: (18.324,-2.984,20.311)
N9: (18.593,-0.857,19.638)
O5': (21.881,-0.839,21.532)
O3': (20.073,2.413,22.555)
OP2: (22.452,-3.239,21.991)
C3': (19.888,1.278,21.714)
C1': (19.041,0.530,19.630)
C5': (22.237,0.489,21.217)
O4': (20.458,0.470,19.580)
C8: (18.841,-1.810,20.585)
O2': (18.324,2.700,20.482)
C6: (16.969,-3.653,18.240)
C5: (17.703,-2.793,19.087)
C4: (17.864,-1.484,18.654)
P: (23.026,-1.931,21.593)
C4': (21.013,1.203,20.697)
C2': (18.636,1.367,20.844)
C2: (16.718,-1.852,16.801)
N1: (16.481,-3.140,17.090)
N3: (17.391,-0.943,17.510)
N6: (16.729,-4.933,18.526)
N7: (18.324,-2.984,20.311)
N9: (18.593,-0.857,19.638)
O5': (21.881,-0.839,21.532)
O3': (20.073,2.413,22.555)
OP1: (20.684,11.376,16.831)
OP2: (18.456,11.064,15.579)
C3': (20.482,6.378,17.228)
C1': (18.376,5.759,18.299)
C5': (20.325,8.788,17.947)
O6: (13.350,4.917,15.055)
O4': (18.742,7.066,18.707)
C8: (16.432,6.940,17.127)
C2: (15.730,2.665,16.448)
C6: (14.347,4.530,15.669)
C5: (15.305,5.339,16.326)
C4: (16.373,4.756,16.979)
P: (19.285,10.876,16.796)
C4': (20.124,7.335,18.347)
C2': (19.570,5.202,17.516)
O2': (20.244,4.189,18.224)
N1: (14.637,3.168,15.775)
N2: (15.870,1.330,16.464)
N3: (16.635,3.424,17.073)
N7: (15.352,6.717,16.431)
N9: (17.121,5.805,17.509)
O5': (19.250,9.318,17.183)
O3': (21.879,6.023,17.242)
OP2: (18.456,11.064,15.579)
C3': (20.482,6.378,17.228)
C1': (18.376,5.759,18.299)
C5': (20.325,8.788,17.947)
O6: (13.350,4.917,15.055)
O4': (18.742,7.066,18.707)
C8: (16.432,6.940,17.127)
C2: (15.730,2.665,16.448)
C6: (14.347,4.530,15.669)
C5: (15.305,5.339,16.326)
C4: (16.373,4.756,16.979)
P: (19.285,10.876,16.796)
C4': (20.124,7.335,18.347)
C2': (19.570,5.202,17.516)
O2': (20.244,4.189,18.224)
N1: (14.637,3.168,15.775)
N2: (15.870,1.330,16.464)
N3: (16.635,3.424,17.073)
N7: (15.352,6.717,16.431)
N9: (17.121,5.805,17.509)
O5': (19.250,9.318,17.183)
O3': (21.879,6.023,17.242)
Image (generated by PyMOL):