Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01953:02468
Extra
PDB:
ATOM 1 O3' C A1952 100.917 107.255 107.004 1.00 64.30 O
ATOM 2 P A A1953 101.440 106.963 105.513 1.00 66.41 P
ATOM 3 OP1 A A1953 100.274 106.757 104.610 1.00 65.62 O
ATOM 4 OP2 A A1953 102.495 105.912 105.617 1.00 65.98 O
ATOM 5 O5' A A1953 102.136 108.328 105.089 1.00 64.77 O
ATOM 6 C5' A A1953 102.798 108.454 103.826 1.00 62.11 C
ATOM 7 C4' A A1953 102.512 109.809 103.226 1.00 60.52 C
ATOM 8 O4' A A1953 101.160 109.854 102.691 1.00 60.61 O
ATOM 9 C3' A A1953 102.629 110.993 104.179 1.00 59.34 C
ATOM 10 O3' A A1953 103.069 112.104 103.429 1.00 59.30 O
ATOM 11 C2' A A1953 101.178 111.246 104.572 1.00 58.97 C
ATOM 12 O2' A A1953 100.954 112.582 104.973 1.00 57.94 O
ATOM 13 C1' A A1953 100.475 110.958 103.248 1.00 59.11 C
ATOM 14 N9 A A1953 99.049 110.636 103.332 1.00 57.96 N
ATOM 15 C8 A A1953 98.451 109.539 103.897 1.00 56.83 C
ATOM 16 N7 A A1953 97.148 109.536 103.783 1.00 56.96 N
ATOM 17 C5 A A1953 96.868 110.712 103.101 1.00 56.51 C
ATOM 18 C6 A A1953 95.667 111.290 102.665 1.00 57.16 C
ATOM 19 N6 A A1953 94.463 110.752 102.880 1.00 59.46 N
ATOM 20 N1 A A1953 95.740 112.461 101.997 1.00 55.93 N
ATOM 21 C2 A A1953 96.934 113.010 101.807 1.00 55.05 C
ATOM 22 N3 A A1953 98.128 112.571 102.177 1.00 56.11 N
ATOM 23 C4 A A1953 98.027 111.400 102.823 1.00 56.38 C
ATOM 24 P U A1954 104.524 112.711 103.677 1.00 57.90 P
ATOM 25 OP1 U A1954 105.506 111.868 102.954 1.00 56.63 O
ATOM 26 OP2 U A1954 104.701 112.969 105.122 1.00 57.28 O
ATOM 27 O5' U A1954 104.398 114.119 102.962 1.00 57.09 O
TER
ATOM 1 O3' C B2467 102.146 120.209 97.588 1.00 44.87 O
ATOM 2 P G B2468 102.407 118.741 96.998 1.00 44.59 P
ATOM 3 OP1 G B2468 103.856 118.510 97.152 1.00 45.63 O
ATOM 4 OP2 G B2468 101.787 118.601 95.661 1.00 42.85 O
ATOM 5 O5' G B2468 101.619 117.798 98.006 1.00 43.88 O
ATOM 6 C5' G B2468 102.096 117.591 99.346 1.00 43.15 C
ATOM 7 C4' G B2468 101.194 116.627 100.079 1.00 42.66 C
ATOM 8 O4' G B2468 99.891 117.228 100.266 1.00 43.72 O
ATOM 9 C3' G B2468 100.894 115.338 99.340 1.00 43.44 C
ATOM 10 O3' G B2468 101.908 114.369 99.508 1.00 44.02 O
ATOM 11 C2' G B2468 99.596 114.900 99.978 1.00 43.02 C
ATOM 12 O2' G B2468 99.847 114.357 101.247 1.00 43.79 O
ATOM 13 C1' G B2468 98.880 116.241 100.122 1.00 45.07 C
ATOM 14 N9 G B2468 98.064 116.579 98.953 1.00 46.81 N
ATOM 15 C8 G B2468 98.425 117.374 97.887 1.00 48.50 C
ATOM 16 N7 G B2468 97.487 117.480 96.984 1.00 49.21 N
ATOM 17 C5 G B2468 96.441 116.713 97.482 1.00 48.85 C
ATOM 18 C6 G B2468 95.153 116.439 96.937 1.00 48.43 C
ATOM 19 O6 G B2468 94.660 116.844 95.878 1.00 49.19 O
ATOM 20 N1 G B2468 94.416 115.601 97.765 1.00 46.95 N
ATOM 21 C2 G B2468 94.849 115.099 98.962 1.00 47.57 C
ATOM 22 N2 G B2468 93.994 114.313 99.610 1.00 48.58 N
ATOM 23 N3 G B2468 96.037 115.348 99.486 1.00 48.63 N
ATOM 24 C4 G B2468 96.779 116.153 98.698 1.00 47.88 C
ATOM 25 P U B2469 102.168 113.299 98.347 1.00 44.66 P
ATOM 26 OP1 U B2469 103.342 112.508 98.779 1.00 48.30 O
ATOM 27 OP2 U B2469 102.196 113.994 97.039 1.00 41.89 O
ATOM 28 O5' U B2469 100.867 112.379 98.395 1.00 46.84 O
TER
ATOM 2 P A A1953 101.440 106.963 105.513 1.00 66.41 P
ATOM 3 OP1 A A1953 100.274 106.757 104.610 1.00 65.62 O
ATOM 4 OP2 A A1953 102.495 105.912 105.617 1.00 65.98 O
ATOM 5 O5' A A1953 102.136 108.328 105.089 1.00 64.77 O
ATOM 6 C5' A A1953 102.798 108.454 103.826 1.00 62.11 C
ATOM 7 C4' A A1953 102.512 109.809 103.226 1.00 60.52 C
ATOM 8 O4' A A1953 101.160 109.854 102.691 1.00 60.61 O
ATOM 9 C3' A A1953 102.629 110.993 104.179 1.00 59.34 C
ATOM 10 O3' A A1953 103.069 112.104 103.429 1.00 59.30 O
ATOM 11 C2' A A1953 101.178 111.246 104.572 1.00 58.97 C
ATOM 12 O2' A A1953 100.954 112.582 104.973 1.00 57.94 O
ATOM 13 C1' A A1953 100.475 110.958 103.248 1.00 59.11 C
ATOM 14 N9 A A1953 99.049 110.636 103.332 1.00 57.96 N
ATOM 15 C8 A A1953 98.451 109.539 103.897 1.00 56.83 C
ATOM 16 N7 A A1953 97.148 109.536 103.783 1.00 56.96 N
ATOM 17 C5 A A1953 96.868 110.712 103.101 1.00 56.51 C
ATOM 18 C6 A A1953 95.667 111.290 102.665 1.00 57.16 C
ATOM 19 N6 A A1953 94.463 110.752 102.880 1.00 59.46 N
ATOM 20 N1 A A1953 95.740 112.461 101.997 1.00 55.93 N
ATOM 21 C2 A A1953 96.934 113.010 101.807 1.00 55.05 C
ATOM 22 N3 A A1953 98.128 112.571 102.177 1.00 56.11 N
ATOM 23 C4 A A1953 98.027 111.400 102.823 1.00 56.38 C
ATOM 24 P U A1954 104.524 112.711 103.677 1.00 57.90 P
ATOM 25 OP1 U A1954 105.506 111.868 102.954 1.00 56.63 O
ATOM 26 OP2 U A1954 104.701 112.969 105.122 1.00 57.28 O
ATOM 27 O5' U A1954 104.398 114.119 102.962 1.00 57.09 O
TER
ATOM 1 O3' C B2467 102.146 120.209 97.588 1.00 44.87 O
ATOM 2 P G B2468 102.407 118.741 96.998 1.00 44.59 P
ATOM 3 OP1 G B2468 103.856 118.510 97.152 1.00 45.63 O
ATOM 4 OP2 G B2468 101.787 118.601 95.661 1.00 42.85 O
ATOM 5 O5' G B2468 101.619 117.798 98.006 1.00 43.88 O
ATOM 6 C5' G B2468 102.096 117.591 99.346 1.00 43.15 C
ATOM 7 C4' G B2468 101.194 116.627 100.079 1.00 42.66 C
ATOM 8 O4' G B2468 99.891 117.228 100.266 1.00 43.72 O
ATOM 9 C3' G B2468 100.894 115.338 99.340 1.00 43.44 C
ATOM 10 O3' G B2468 101.908 114.369 99.508 1.00 44.02 O
ATOM 11 C2' G B2468 99.596 114.900 99.978 1.00 43.02 C
ATOM 12 O2' G B2468 99.847 114.357 101.247 1.00 43.79 O
ATOM 13 C1' G B2468 98.880 116.241 100.122 1.00 45.07 C
ATOM 14 N9 G B2468 98.064 116.579 98.953 1.00 46.81 N
ATOM 15 C8 G B2468 98.425 117.374 97.887 1.00 48.50 C
ATOM 16 N7 G B2468 97.487 117.480 96.984 1.00 49.21 N
ATOM 17 C5 G B2468 96.441 116.713 97.482 1.00 48.85 C
ATOM 18 C6 G B2468 95.153 116.439 96.937 1.00 48.43 C
ATOM 19 O6 G B2468 94.660 116.844 95.878 1.00 49.19 O
ATOM 20 N1 G B2468 94.416 115.601 97.765 1.00 46.95 N
ATOM 21 C2 G B2468 94.849 115.099 98.962 1.00 47.57 C
ATOM 22 N2 G B2468 93.994 114.313 99.610 1.00 48.58 N
ATOM 23 N3 G B2468 96.037 115.348 99.486 1.00 48.63 N
ATOM 24 C4 G B2468 96.779 116.153 98.698 1.00 47.88 C
ATOM 25 P U B2469 102.168 113.299 98.347 1.00 44.66 P
ATOM 26 OP1 U B2469 103.342 112.508 98.779 1.00 48.30 O
ATOM 27 OP2 U B2469 102.196 113.994 97.039 1.00 41.89 O
ATOM 28 O5' U B2469 100.867 112.379 98.395 1.00 46.84 O
TER
Atoms:
OP1: (100.274,106.757,104.610)
OP2: (102.495,105.912,105.617)
C3': (102.629,110.993,104.179)
C1': (100.475,110.958,103.248)
C5': (102.798,108.454,103.826)
O4': (101.160,109.854,102.691)
C8: (98.451,109.539,103.897)
O2': (100.954,112.582,104.973)
C6: (95.667,111.290,102.665)
C5: (96.868,110.712,103.101)
C4: (98.027,111.400,102.823)
P: (101.440,106.963,105.513)
C4': (102.512,109.809,103.226)
C2': (101.178,111.246,104.572)
C2: (96.934,113.010,101.807)
N1: (95.740,112.461,101.997)
N3: (98.128,112.571,102.177)
N6: (94.463,110.752,102.880)
N7: (97.148,109.536,103.783)
N9: (99.049,110.636,103.332)
O5': (102.136,108.328,105.089)
O3': (103.069,112.104,103.429)
OP2: (102.495,105.912,105.617)
C3': (102.629,110.993,104.179)
C1': (100.475,110.958,103.248)
C5': (102.798,108.454,103.826)
O4': (101.160,109.854,102.691)
C8: (98.451,109.539,103.897)
O2': (100.954,112.582,104.973)
C6: (95.667,111.290,102.665)
C5: (96.868,110.712,103.101)
C4: (98.027,111.400,102.823)
P: (101.440,106.963,105.513)
C4': (102.512,109.809,103.226)
C2': (101.178,111.246,104.572)
C2: (96.934,113.010,101.807)
N1: (95.740,112.461,101.997)
N3: (98.128,112.571,102.177)
N6: (94.463,110.752,102.880)
N7: (97.148,109.536,103.783)
N9: (99.049,110.636,103.332)
O5': (102.136,108.328,105.089)
O3': (103.069,112.104,103.429)
OP1: (103.856,118.510,97.152)
OP2: (101.787,118.601,95.661)
C3': (100.894,115.338,99.340)
C1': (98.880,116.241,100.122)
C5': (102.096,117.591,99.346)
O6: (94.660,116.844,95.878)
O4': (99.891,117.228,100.266)
C8: (98.425,117.374,97.887)
C2: (94.849,115.099,98.962)
C6: (95.153,116.439,96.937)
C5: (96.441,116.713,97.482)
C4: (96.779,116.153,98.698)
P: (102.407,118.741,96.998)
C4': (101.194,116.627,100.079)
C2': (99.596,114.900,99.978)
O2': (99.847,114.357,101.247)
N1: (94.416,115.601,97.765)
N2: (93.994,114.313,99.610)
N3: (96.037,115.348,99.486)
N7: (97.487,117.480,96.984)
N9: (98.064,116.579,98.953)
O5': (101.619,117.798,98.006)
O3': (101.908,114.369,99.508)
OP2: (101.787,118.601,95.661)
C3': (100.894,115.338,99.340)
C1': (98.880,116.241,100.122)
C5': (102.096,117.591,99.346)
O6: (94.660,116.844,95.878)
O4': (99.891,117.228,100.266)
C8: (98.425,117.374,97.887)
C2: (94.849,115.099,98.962)
C6: (95.153,116.439,96.937)
C5: (96.441,116.713,97.482)
C4: (96.779,116.153,98.698)
P: (102.407,118.741,96.998)
C4': (101.194,116.627,100.079)
C2': (99.596,114.900,99.978)
O2': (99.847,114.357,101.247)
N1: (94.416,115.601,97.765)
N2: (93.994,114.313,99.610)
N3: (96.037,115.348,99.486)
N7: (97.487,117.480,96.984)
N9: (98.064,116.579,98.953)
O5': (101.619,117.798,98.006)
O3': (101.908,114.369,99.508)
Image (generated by PyMOL):