ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:01017:02332

Extra

PDB:
ATOM 1 O3' A A1016 57.518 95.144 114.110 1.00 40.71 O
ATOM 2 P A A1017 56.469 94.884 112.918 1.00 40.26 P
ATOM 3 OP1 A A1017 55.137 94.741 113.558 1.00 37.86 O
ATOM 4 OP2 A A1017 56.972 93.802 112.027 1.00 38.42 O
ATOM 5 O5' A A1017 56.485 96.254 112.108 1.00 39.86 O
ATOM 6 C5' A A1017 55.924 97.468 112.654 1.00 38.92 C
ATOM 7 C4' A A1017 56.253 98.625 111.746 1.00 40.63 C
ATOM 8 O4' A A1017 57.691 98.768 111.710 1.00 40.66 O
ATOM 9 C3' A A1017 55.851 98.413 110.293 1.00 42.18 C
ATOM 10 O3' A A1017 54.529 98.889 110.050 1.00 45.74 O
ATOM 11 C2' A A1017 56.862 99.263 109.536 1.00 41.43 C
ATOM 12 O2' A A1017 56.505 100.628 109.519 1.00 40.53 O
ATOM 13 C1' A A1017 58.112 99.093 110.401 1.00 41.15 C
ATOM 14 N9 A A1017 59.056 98.064 109.964 1.00 41.60 N
ATOM 15 C8 A A1017 58.964 96.705 110.134 1.00 41.81 C
ATOM 16 N7 A A1017 59.992 96.044 109.662 1.00 41.62 N
ATOM 17 C5 A A1017 60.816 97.032 109.141 1.00 41.29 C
ATOM 18 C6 A A1017 62.068 96.983 108.506 1.00 40.83 C
ATOM 19 N6 A A1017 62.745 95.853 108.292 1.00 40.90 N
ATOM 20 N1 A A1017 62.613 98.150 108.099 1.00 41.34 N
ATOM 21 C2 A A1017 61.946 99.282 108.328 1.00 41.73 C
ATOM 22 N3 A A1017 60.770 99.459 108.921 1.00 43.23 N
ATOM 23 C4 A A1017 60.248 98.280 109.310 1.00 42.05 C
ATOM 24 P G A1018 53.256 98.008 110.490 1.00 47.57 P
ATOM 25 OP1 G A1018 52.765 98.531 111.801 1.00 43.82 O
ATOM 26 OP2 G A1018 53.603 96.570 110.348 1.00 48.84 O
ATOM 27 O5' G A1018 52.174 98.344 109.376 1.00 44.78 O
TER

ATOM 1 O3' A B2331 54.110 109.514 111.604 1.00 40.95 O
ATOM 2 P G B2332 54.517 108.761 112.952 1.00 41.14 P
ATOM 3 OP1 G B2332 53.285 108.703 113.776 1.00 39.87 O
ATOM 4 OP2 G B2332 55.738 109.385 113.504 1.00 40.65 O
ATOM 5 O5' G B2332 54.898 107.292 112.471 1.00 40.42 O
ATOM 6 C5' G B2332 53.887 106.378 112.013 1.00 38.73 C
ATOM 7 C4' G B2332 54.516 105.087 111.541 1.00 37.20 C
ATOM 8 O4' G B2332 55.368 105.346 110.396 1.00 35.54 O
ATOM 9 C3' G B2332 55.437 104.393 112.525 1.00 37.47 C
ATOM 10 O3' G B2332 54.706 103.637 113.486 1.00 41.53 O
ATOM 11 C2' G B2332 56.274 103.523 111.600 1.00 36.23 C
ATOM 12 O2' G B2332 55.584 102.370 111.166 1.00 31.99 O
ATOM 13 C1' G B2332 56.478 104.470 110.416 1.00 35.03 C
ATOM 14 N9 G B2332 57.686 105.278 110.547 1.00 35.94 N
ATOM 15 C8 G B2332 57.770 106.588 110.957 1.00 37.29 C
ATOM 16 N7 G B2332 58.995 107.036 110.997 1.00 37.77 N
ATOM 17 C5 G B2332 59.767 105.959 110.586 1.00 37.44 C
ATOM 18 C6 G B2332 61.166 105.839 110.444 1.00 38.08 C
ATOM 19 O6 G B2332 62.043 106.682 110.688 1.00 40.13 O
ATOM 20 N1 G B2332 61.525 104.580 109.981 1.00 36.91 N
ATOM 21 C2 G B2332 60.655 103.563 109.705 1.00 36.26 C
ATOM 22 N2 G B2332 61.200 102.434 109.237 1.00 35.95 N
ATOM 23 N3 G B2332 59.349 103.649 109.863 1.00 36.05 N
ATOM 24 C4 G B2332 58.975 104.869 110.296 1.00 36.29 C
ATOM 25 P U B2333 55.225 103.564 115.009 1.00 41.84 P
ATOM 26 OP1 U B2333 54.221 102.756 115.758 1.00 39.92 O
ATOM 27 OP2 U B2333 55.553 104.939 115.474 1.00 40.57 O
ATOM 28 O5' U B2333 56.574 102.728 114.881 1.00 39.39 O
TER

Atoms:
OP1: (55.137,94.741,113.558)
OP2: (56.972,93.802,112.027)
C3': (55.851,98.413,110.293)
C1': (58.112,99.093,110.401)
C5': (55.924,97.468,112.654)
O4': (57.691,98.768,111.710)
C8: (58.964,96.705,110.134)
O2': (56.505,100.628,109.519)
C6: (62.068,96.983,108.506)
C5: (60.816,97.032,109.141)
C4: (60.248,98.280,109.310)
P: (56.469,94.884,112.918)
C4': (56.253,98.625,111.746)
C2': (56.862,99.263,109.536)
C2: (61.946,99.282,108.328)
N1: (62.613,98.150,108.099)
N3: (60.770,99.459,108.921)
N6: (62.745,95.853,108.292)
N7: (59.992,96.044,109.662)
N9: (59.056,98.064,109.964)
O5': (56.485,96.254,112.108)
O3': (54.529,98.889,110.050)
OP1: (53.285,108.703,113.776)
OP2: (55.738,109.385,113.504)
C3': (55.437,104.393,112.525)
C1': (56.478,104.470,110.416)
C5': (53.887,106.378,112.013)
O6: (62.043,106.682,110.688)
O4': (55.368,105.346,110.396)
C8: (57.770,106.588,110.957)
C2: (60.655,103.563,109.705)
C6: (61.166,105.839,110.444)
C5: (59.767,105.959,110.586)
C4: (58.975,104.869,110.296)
P: (54.517,108.761,112.952)
C4': (54.516,105.087,111.541)
C2': (56.274,103.523,111.600)
O2': (55.584,102.370,111.166)
N1: (61.525,104.580,109.981)
N2: (61.200,102.434,109.237)
N3: (59.349,103.649,109.863)
N7: (58.995,107.036,110.997)
N9: (57.686,105.278,110.547)
O5': (54.898,107.292,112.471)
O3': (54.706,103.637,113.486)
Image (generated by PyMOL):
PyMOL image
show in jmol