Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5O:B16:B65
Extra
PDB:
ATOM 1 O3' C A 15 100.295 19.169 25.999 1.00124.07 O
ATOM 2 P C A 16 99.067 18.276 26.519 1.00126.26 P
ATOM 3 OP1 C A 16 97.874 18.615 25.700 1.00129.15 O
ATOM 4 OP2 C A 16 99.009 18.420 27.996 1.00125.25 O
ATOM 5 O5' C A 16 99.513 16.785 26.176 1.00117.61 O
ATOM 6 C5' C A 16 99.534 16.327 24.828 1.00114.25 C
ATOM 7 C4' C A 16 99.899 14.861 24.770 1.00113.09 C
ATOM 8 O4' C A 16 101.278 14.680 25.191 1.00114.00 O
ATOM 9 C3' C A 16 99.128 13.932 25.691 1.00114.79 C
ATOM 10 O3' C A 16 97.850 13.586 25.177 1.00116.74 O
ATOM 11 C2' C A 16 100.053 12.725 25.748 1.00113.81 C
ATOM 12 O2' C A 16 99.969 11.920 24.590 1.00110.70 O
ATOM 13 C1' C A 16 101.421 13.408 25.810 1.00110.38 C
ATOM 14 N1 C A 16 101.861 13.608 27.198 1.00106.14 N
ATOM 15 C2 C A 16 102.408 12.523 27.892 1.00105.40 C
ATOM 16 O2 C A 16 102.518 11.432 27.310 1.00104.21 O
ATOM 17 N3 C A 16 102.799 12.690 29.178 1.00104.64 N
ATOM 18 C4 C A 16 102.662 13.880 29.768 1.00103.93 C
ATOM 19 N4 C A 16 103.059 13.998 31.037 1.00102.97 N
ATOM 20 C5 C A 16 102.113 15.003 29.082 1.00104.23 C
ATOM 21 C6 C A 16 101.731 14.825 27.810 1.00105.37 C
ATOM 22 P A A 17 96.712 13.062 26.184 1.00116.27 P
ATOM 23 OP1 A A 17 95.472 12.814 25.406 1.00118.63 O
ATOM 24 OP2 A A 17 96.676 13.988 27.345 1.00110.87 O
ATOM 25 O5' A A 17 97.274 11.661 26.692 1.00114.33 O
TER
ATOM 1 O3' U B 64 107.479 4.312 37.457 1.00125.76 O
ATOM 2 P G B 65 108.704 4.520 36.444 1.00131.41 P
ATOM 3 OP1 G B 65 109.684 3.428 36.672 1.00132.46 O
ATOM 4 OP2 G B 65 109.142 5.937 36.544 1.00122.59 O
ATOM 5 O5' G B 65 108.042 4.316 35.012 1.00124.98 O
ATOM 6 C5' G B 65 108.595 4.939 33.865 1.00123.47 C
ATOM 7 C4' G B 65 107.705 4.713 32.671 1.00125.97 C
ATOM 8 O4' G B 65 106.379 5.238 32.943 1.00121.90 O
ATOM 9 C3' G B 65 108.150 5.445 31.419 1.00130.48 C
ATOM 10 O3' G B 65 109.132 4.684 30.733 1.00139.08 O
ATOM 11 C2' G B 65 106.849 5.565 30.638 1.00123.68 C
ATOM 12 O2' G B 65 106.504 4.373 29.960 1.00124.78 O
ATOM 13 C1' G B 65 105.851 5.832 31.767 1.00117.09 C
ATOM 14 N9 G B 65 105.658 7.255 32.030 1.00109.12 N
ATOM 15 C8 G B 65 106.113 7.965 33.116 1.00106.84 C
ATOM 16 N7 G B 65 105.786 9.227 33.076 1.00106.16 N
ATOM 17 C5 G B 65 105.072 9.361 31.892 1.00106.21 C
ATOM 18 C6 G B 65 104.461 10.504 31.309 1.00104.90 C
ATOM 19 O6 G B 65 104.427 11.665 31.736 1.00103.26 O
ATOM 20 N1 G B 65 103.842 10.192 30.101 1.00104.32 N
ATOM 21 C2 G B 65 103.813 8.943 29.527 1.00104.81 C
ATOM 22 N2 G B 65 103.164 8.846 28.357 1.00104.78 N
ATOM 23 N3 G B 65 104.377 7.871 30.060 1.00105.02 N
ATOM 24 C4 G B 65 104.984 8.151 31.234 1.00106.91 C
ATOM 25 P G B 66 110.541 5.358 30.367 1.00143.61 P
ATOM 26 OP1 G B 66 111.628 4.453 30.824 1.00143.12 O
ATOM 27 OP2 G B 66 110.504 6.764 30.849 1.00138.14 O
ATOM 28 O5' G B 66 110.536 5.378 28.776 1.00141.88 O
TER
ATOM 2 P C A 16 99.067 18.276 26.519 1.00126.26 P
ATOM 3 OP1 C A 16 97.874 18.615 25.700 1.00129.15 O
ATOM 4 OP2 C A 16 99.009 18.420 27.996 1.00125.25 O
ATOM 5 O5' C A 16 99.513 16.785 26.176 1.00117.61 O
ATOM 6 C5' C A 16 99.534 16.327 24.828 1.00114.25 C
ATOM 7 C4' C A 16 99.899 14.861 24.770 1.00113.09 C
ATOM 8 O4' C A 16 101.278 14.680 25.191 1.00114.00 O
ATOM 9 C3' C A 16 99.128 13.932 25.691 1.00114.79 C
ATOM 10 O3' C A 16 97.850 13.586 25.177 1.00116.74 O
ATOM 11 C2' C A 16 100.053 12.725 25.748 1.00113.81 C
ATOM 12 O2' C A 16 99.969 11.920 24.590 1.00110.70 O
ATOM 13 C1' C A 16 101.421 13.408 25.810 1.00110.38 C
ATOM 14 N1 C A 16 101.861 13.608 27.198 1.00106.14 N
ATOM 15 C2 C A 16 102.408 12.523 27.892 1.00105.40 C
ATOM 16 O2 C A 16 102.518 11.432 27.310 1.00104.21 O
ATOM 17 N3 C A 16 102.799 12.690 29.178 1.00104.64 N
ATOM 18 C4 C A 16 102.662 13.880 29.768 1.00103.93 C
ATOM 19 N4 C A 16 103.059 13.998 31.037 1.00102.97 N
ATOM 20 C5 C A 16 102.113 15.003 29.082 1.00104.23 C
ATOM 21 C6 C A 16 101.731 14.825 27.810 1.00105.37 C
ATOM 22 P A A 17 96.712 13.062 26.184 1.00116.27 P
ATOM 23 OP1 A A 17 95.472 12.814 25.406 1.00118.63 O
ATOM 24 OP2 A A 17 96.676 13.988 27.345 1.00110.87 O
ATOM 25 O5' A A 17 97.274 11.661 26.692 1.00114.33 O
TER
ATOM 1 O3' U B 64 107.479 4.312 37.457 1.00125.76 O
ATOM 2 P G B 65 108.704 4.520 36.444 1.00131.41 P
ATOM 3 OP1 G B 65 109.684 3.428 36.672 1.00132.46 O
ATOM 4 OP2 G B 65 109.142 5.937 36.544 1.00122.59 O
ATOM 5 O5' G B 65 108.042 4.316 35.012 1.00124.98 O
ATOM 6 C5' G B 65 108.595 4.939 33.865 1.00123.47 C
ATOM 7 C4' G B 65 107.705 4.713 32.671 1.00125.97 C
ATOM 8 O4' G B 65 106.379 5.238 32.943 1.00121.90 O
ATOM 9 C3' G B 65 108.150 5.445 31.419 1.00130.48 C
ATOM 10 O3' G B 65 109.132 4.684 30.733 1.00139.08 O
ATOM 11 C2' G B 65 106.849 5.565 30.638 1.00123.68 C
ATOM 12 O2' G B 65 106.504 4.373 29.960 1.00124.78 O
ATOM 13 C1' G B 65 105.851 5.832 31.767 1.00117.09 C
ATOM 14 N9 G B 65 105.658 7.255 32.030 1.00109.12 N
ATOM 15 C8 G B 65 106.113 7.965 33.116 1.00106.84 C
ATOM 16 N7 G B 65 105.786 9.227 33.076 1.00106.16 N
ATOM 17 C5 G B 65 105.072 9.361 31.892 1.00106.21 C
ATOM 18 C6 G B 65 104.461 10.504 31.309 1.00104.90 C
ATOM 19 O6 G B 65 104.427 11.665 31.736 1.00103.26 O
ATOM 20 N1 G B 65 103.842 10.192 30.101 1.00104.32 N
ATOM 21 C2 G B 65 103.813 8.943 29.527 1.00104.81 C
ATOM 22 N2 G B 65 103.164 8.846 28.357 1.00104.78 N
ATOM 23 N3 G B 65 104.377 7.871 30.060 1.00105.02 N
ATOM 24 C4 G B 65 104.984 8.151 31.234 1.00106.91 C
ATOM 25 P G B 66 110.541 5.358 30.367 1.00143.61 P
ATOM 26 OP1 G B 66 111.628 4.453 30.824 1.00143.12 O
ATOM 27 OP2 G B 66 110.504 6.764 30.849 1.00138.14 O
ATOM 28 O5' G B 66 110.536 5.378 28.776 1.00141.88 O
TER
Atoms:
C2: (102.408,12.523,27.892)
OP1: (97.874,18.615,25.700)
OP2: (99.009,18.420,27.996)
C4: (102.662,13.880,29.768)
O5': (99.513,16.785,26.176)
C3': (99.128,13.932,25.691)
C1': (101.421,13.408,25.810)
O4': (101.278,14.680,25.191)
C5': (99.534,16.327,24.828)
P: (99.067,18.276,26.519)
O2: (102.518,11.432,27.310)
C4': (99.899,14.861,24.770)
C2': (100.053,12.725,25.748)
O2': (99.969,11.920,24.590)
N1: (101.861,13.608,27.198)
N3: (102.799,12.690,29.178)
N4: (103.059,13.998,31.037)
C6: (101.731,14.825,27.810)
C5: (102.113,15.003,29.082)
O3': (97.850,13.586,25.177)
OP1: (97.874,18.615,25.700)
OP2: (99.009,18.420,27.996)
C4: (102.662,13.880,29.768)
O5': (99.513,16.785,26.176)
C3': (99.128,13.932,25.691)
C1': (101.421,13.408,25.810)
O4': (101.278,14.680,25.191)
C5': (99.534,16.327,24.828)
P: (99.067,18.276,26.519)
O2: (102.518,11.432,27.310)
C4': (99.899,14.861,24.770)
C2': (100.053,12.725,25.748)
O2': (99.969,11.920,24.590)
N1: (101.861,13.608,27.198)
N3: (102.799,12.690,29.178)
N4: (103.059,13.998,31.037)
C6: (101.731,14.825,27.810)
C5: (102.113,15.003,29.082)
O3': (97.850,13.586,25.177)
OP1: (109.684,3.428,36.672)
OP2: (109.142,5.937,36.544)
C3': (108.150,5.445,31.419)
C1': (105.851,5.832,31.767)
C5': (108.595,4.939,33.865)
O6: (104.427,11.665,31.736)
O4': (106.379,5.238,32.943)
C8: (106.113,7.965,33.116)
C2: (103.813,8.943,29.527)
C6: (104.461,10.504,31.309)
C5: (105.072,9.361,31.892)
C4: (104.984,8.151,31.234)
P: (108.704,4.520,36.444)
C4': (107.705,4.713,32.671)
C2': (106.849,5.565,30.638)
O2': (106.504,4.373,29.960)
N1: (103.842,10.192,30.101)
N2: (103.164,8.846,28.357)
N3: (104.377,7.871,30.060)
N7: (105.786,9.227,33.076)
N9: (105.658,7.255,32.030)
O5': (108.042,4.316,35.012)
O3': (109.132,4.684,30.733)
OP2: (109.142,5.937,36.544)
C3': (108.150,5.445,31.419)
C1': (105.851,5.832,31.767)
C5': (108.595,4.939,33.865)
O6: (104.427,11.665,31.736)
O4': (106.379,5.238,32.943)
C8: (106.113,7.965,33.116)
C2: (103.813,8.943,29.527)
C6: (104.461,10.504,31.309)
C5: (105.072,9.361,31.892)
C4: (104.984,8.151,31.234)
P: (108.704,4.520,36.444)
C4': (107.705,4.713,32.671)
C2': (106.849,5.565,30.638)
O2': (106.504,4.373,29.960)
N1: (103.842,10.192,30.101)
N2: (103.164,8.846,28.357)
N3: (104.377,7.871,30.060)
N7: (105.786,9.227,33.076)
N9: (105.658,7.255,32.030)
O5': (108.042,4.316,35.012)
O3': (109.132,4.684,30.733)
Image (generated by PyMOL):