Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5K:E23:E10
Extra
PDB:
ATOM 1 O3' A A 22 -7.285 17.353 104.743 1.00 66.02 O
ATOM 2 P A A 23 -5.991 18.177 104.271 1.00 85.36 P
ATOM 3 OP1 A A 23 -6.114 18.538 102.831 1.00 73.87 O
ATOM 4 OP2 A A 23 -4.804 17.413 104.741 1.00 71.73 O
ATOM 5 O5' A A 23 -6.099 19.526 105.107 1.00 79.37 O
ATOM 6 C5' A A 23 -7.166 20.435 104.869 1.00 81.93 C
ATOM 7 C4' A A 23 -7.065 21.610 105.804 1.00 75.12 C
ATOM 8 O4' A A 23 -7.250 21.152 107.170 1.00 89.66 O
ATOM 9 C3' A A 23 -5.710 22.286 105.827 1.00 77.25 C
ATOM 10 O3' A A 23 -5.569 23.213 104.761 1.00 77.97 O
ATOM 11 C2' A A 23 -5.723 22.955 107.191 1.00 80.52 C
ATOM 12 O2' A A 23 -6.526 24.113 107.208 1.00 70.13 O
ATOM 13 C1' A A 23 -6.387 21.869 108.037 1.00 84.91 C
ATOM 14 N9 A A 23 -5.428 20.920 108.603 1.00 89.25 N
ATOM 15 C8 A A 23 -5.116 19.672 108.126 1.00 87.12 C
ATOM 16 N7 A A 23 -4.227 19.037 108.848 1.00 89.10 N
ATOM 17 C5 A A 23 -3.929 19.927 109.869 1.00 88.94 C
ATOM 18 C6 A A 23 -3.055 19.846 110.965 1.00 91.45 C
ATOM 19 N6 A A 23 -2.294 18.781 111.224 1.00 91.70 N
ATOM 20 N1 A A 23 -2.988 20.910 111.797 1.00 86.73 N
ATOM 21 C2 A A 23 -3.754 21.973 111.534 1.00 82.66 C
ATOM 22 N3 A A 23 -4.615 22.166 110.538 1.00 85.52 N
ATOM 23 C4 A A 23 -4.657 21.093 109.730 1.00 88.51 C
ATOM 24 P C A 24 -4.128 23.420 104.083 1.00 82.68 P
ATOM 25 OP1 C A 24 -4.218 24.474 103.042 1.00 82.27 O
ATOM 26 OP2 C A 24 -3.608 22.078 103.725 1.00 78.56 O
ATOM 27 O5' C A 24 -3.245 23.986 105.275 1.00 78.53 O
TER
ATOM 1 O3' A B 9 -2.576 30.737 109.365 1.00105.53 O
ATOM 2 P G B 10 -4.128 31.027 109.686 1.00109.75 P
ATOM 3 OP1 G B 10 -4.703 31.714 108.501 1.00113.57 O
ATOM 4 OP2 G B 10 -4.222 31.665 111.025 1.00 98.53 O
ATOM 5 O5' G B 10 -4.787 29.582 109.792 1.00106.10 O
ATOM 6 C5' G B 10 -4.772 28.691 108.683 1.00 98.06 C
ATOM 7 C4' G B 10 -4.985 27.276 109.156 1.00 86.06 C
ATOM 8 O4' G B 10 -3.912 26.914 110.063 1.00 72.86 O
ATOM 9 C3' G B 10 -6.250 27.042 109.964 1.00 83.61 C
ATOM 10 O3' G B 10 -7.347 26.807 109.085 1.00 95.07 O
ATOM 11 C2' G B 10 -5.886 25.789 110.752 1.00 81.04 C
ATOM 12 O2' G B 10 -5.981 24.621 109.964 1.00 82.70 O
ATOM 13 C1' G B 10 -4.411 26.046 111.066 1.00 78.44 C
ATOM 14 N9 G B 10 -4.184 26.665 112.368 1.00 68.41 N
ATOM 15 C8 G B 10 -3.940 27.994 112.627 1.00 69.97 C
ATOM 16 N7 G B 10 -3.783 28.249 113.900 1.00 65.02 N
ATOM 17 C5 G B 10 -3.932 27.014 114.516 1.00 65.64 C
ATOM 18 C6 G B 10 -3.871 26.657 115.888 1.00 65.67 C
ATOM 19 O6 G B 10 -3.673 27.385 116.870 1.00 77.93 O
ATOM 20 N1 G B 10 -4.073 25.297 116.070 1.00 60.21 N
ATOM 21 C2 G B 10 -4.309 24.395 115.068 1.00 60.73 C
ATOM 22 N2 G B 10 -4.484 23.124 115.458 1.00 56.47 N
ATOM 23 N3 G B 10 -4.371 24.712 113.783 1.00 57.16 N
ATOM 24 C4 G B 10 -4.176 26.026 113.582 1.00 62.75 C
ATOM 25 P U B 11 -8.830 27.269 109.503 1.00 92.83 P
ATOM 26 OP1 U B 11 -9.639 27.339 108.261 1.00 88.24 O
ATOM 27 OP2 U B 11 -8.700 28.472 110.364 1.00 94.59 O
ATOM 28 O5' U B 11 -9.382 26.066 110.392 1.00 82.13 O
TER
ATOM 2 P A A 23 -5.991 18.177 104.271 1.00 85.36 P
ATOM 3 OP1 A A 23 -6.114 18.538 102.831 1.00 73.87 O
ATOM 4 OP2 A A 23 -4.804 17.413 104.741 1.00 71.73 O
ATOM 5 O5' A A 23 -6.099 19.526 105.107 1.00 79.37 O
ATOM 6 C5' A A 23 -7.166 20.435 104.869 1.00 81.93 C
ATOM 7 C4' A A 23 -7.065 21.610 105.804 1.00 75.12 C
ATOM 8 O4' A A 23 -7.250 21.152 107.170 1.00 89.66 O
ATOM 9 C3' A A 23 -5.710 22.286 105.827 1.00 77.25 C
ATOM 10 O3' A A 23 -5.569 23.213 104.761 1.00 77.97 O
ATOM 11 C2' A A 23 -5.723 22.955 107.191 1.00 80.52 C
ATOM 12 O2' A A 23 -6.526 24.113 107.208 1.00 70.13 O
ATOM 13 C1' A A 23 -6.387 21.869 108.037 1.00 84.91 C
ATOM 14 N9 A A 23 -5.428 20.920 108.603 1.00 89.25 N
ATOM 15 C8 A A 23 -5.116 19.672 108.126 1.00 87.12 C
ATOM 16 N7 A A 23 -4.227 19.037 108.848 1.00 89.10 N
ATOM 17 C5 A A 23 -3.929 19.927 109.869 1.00 88.94 C
ATOM 18 C6 A A 23 -3.055 19.846 110.965 1.00 91.45 C
ATOM 19 N6 A A 23 -2.294 18.781 111.224 1.00 91.70 N
ATOM 20 N1 A A 23 -2.988 20.910 111.797 1.00 86.73 N
ATOM 21 C2 A A 23 -3.754 21.973 111.534 1.00 82.66 C
ATOM 22 N3 A A 23 -4.615 22.166 110.538 1.00 85.52 N
ATOM 23 C4 A A 23 -4.657 21.093 109.730 1.00 88.51 C
ATOM 24 P C A 24 -4.128 23.420 104.083 1.00 82.68 P
ATOM 25 OP1 C A 24 -4.218 24.474 103.042 1.00 82.27 O
ATOM 26 OP2 C A 24 -3.608 22.078 103.725 1.00 78.56 O
ATOM 27 O5' C A 24 -3.245 23.986 105.275 1.00 78.53 O
TER
ATOM 1 O3' A B 9 -2.576 30.737 109.365 1.00105.53 O
ATOM 2 P G B 10 -4.128 31.027 109.686 1.00109.75 P
ATOM 3 OP1 G B 10 -4.703 31.714 108.501 1.00113.57 O
ATOM 4 OP2 G B 10 -4.222 31.665 111.025 1.00 98.53 O
ATOM 5 O5' G B 10 -4.787 29.582 109.792 1.00106.10 O
ATOM 6 C5' G B 10 -4.772 28.691 108.683 1.00 98.06 C
ATOM 7 C4' G B 10 -4.985 27.276 109.156 1.00 86.06 C
ATOM 8 O4' G B 10 -3.912 26.914 110.063 1.00 72.86 O
ATOM 9 C3' G B 10 -6.250 27.042 109.964 1.00 83.61 C
ATOM 10 O3' G B 10 -7.347 26.807 109.085 1.00 95.07 O
ATOM 11 C2' G B 10 -5.886 25.789 110.752 1.00 81.04 C
ATOM 12 O2' G B 10 -5.981 24.621 109.964 1.00 82.70 O
ATOM 13 C1' G B 10 -4.411 26.046 111.066 1.00 78.44 C
ATOM 14 N9 G B 10 -4.184 26.665 112.368 1.00 68.41 N
ATOM 15 C8 G B 10 -3.940 27.994 112.627 1.00 69.97 C
ATOM 16 N7 G B 10 -3.783 28.249 113.900 1.00 65.02 N
ATOM 17 C5 G B 10 -3.932 27.014 114.516 1.00 65.64 C
ATOM 18 C6 G B 10 -3.871 26.657 115.888 1.00 65.67 C
ATOM 19 O6 G B 10 -3.673 27.385 116.870 1.00 77.93 O
ATOM 20 N1 G B 10 -4.073 25.297 116.070 1.00 60.21 N
ATOM 21 C2 G B 10 -4.309 24.395 115.068 1.00 60.73 C
ATOM 22 N2 G B 10 -4.484 23.124 115.458 1.00 56.47 N
ATOM 23 N3 G B 10 -4.371 24.712 113.783 1.00 57.16 N
ATOM 24 C4 G B 10 -4.176 26.026 113.582 1.00 62.75 C
ATOM 25 P U B 11 -8.830 27.269 109.503 1.00 92.83 P
ATOM 26 OP1 U B 11 -9.639 27.339 108.261 1.00 88.24 O
ATOM 27 OP2 U B 11 -8.700 28.472 110.364 1.00 94.59 O
ATOM 28 O5' U B 11 -9.382 26.066 110.392 1.00 82.13 O
TER
Atoms:
OP1: (-6.114,18.538,102.831)
OP2: (-4.804,17.413,104.741)
C3': (-5.710,22.286,105.827)
C1': (-6.387,21.869,108.037)
C5': (-7.166,20.435,104.869)
O4': (-7.250,21.152,107.170)
C8: (-5.116,19.672,108.126)
O2': (-6.526,24.113,107.208)
C6: (-3.055,19.846,110.965)
C5: (-3.929,19.927,109.869)
C4: (-4.657,21.093,109.730)
P: (-5.991,18.177,104.271)
C4': (-7.065,21.610,105.804)
C2': (-5.723,22.955,107.191)
C2: (-3.754,21.973,111.534)
N1: (-2.988,20.910,111.797)
N3: (-4.615,22.166,110.538)
N6: (-2.294,18.781,111.224)
N7: (-4.227,19.037,108.848)
N9: (-5.428,20.920,108.603)
O5': (-6.099,19.526,105.107)
O3': (-5.569,23.213,104.761)
OP2: (-4.804,17.413,104.741)
C3': (-5.710,22.286,105.827)
C1': (-6.387,21.869,108.037)
C5': (-7.166,20.435,104.869)
O4': (-7.250,21.152,107.170)
C8: (-5.116,19.672,108.126)
O2': (-6.526,24.113,107.208)
C6: (-3.055,19.846,110.965)
C5: (-3.929,19.927,109.869)
C4: (-4.657,21.093,109.730)
P: (-5.991,18.177,104.271)
C4': (-7.065,21.610,105.804)
C2': (-5.723,22.955,107.191)
C2: (-3.754,21.973,111.534)
N1: (-2.988,20.910,111.797)
N3: (-4.615,22.166,110.538)
N6: (-2.294,18.781,111.224)
N7: (-4.227,19.037,108.848)
N9: (-5.428,20.920,108.603)
O5': (-6.099,19.526,105.107)
O3': (-5.569,23.213,104.761)
OP1: (-4.703,31.714,108.501)
OP2: (-4.222,31.665,111.025)
C3': (-6.250,27.042,109.964)
C1': (-4.411,26.046,111.066)
C5': (-4.772,28.691,108.683)
O6: (-3.673,27.385,116.870)
O4': (-3.912,26.914,110.063)
C8: (-3.940,27.994,112.627)
C2: (-4.309,24.395,115.068)
C6: (-3.871,26.657,115.888)
C5: (-3.932,27.014,114.516)
C4: (-4.176,26.026,113.582)
P: (-4.128,31.027,109.686)
C4': (-4.985,27.276,109.156)
C2': (-5.886,25.789,110.752)
O2': (-5.981,24.621,109.964)
N1: (-4.073,25.297,116.070)
N2: (-4.484,23.124,115.458)
N3: (-4.371,24.712,113.783)
N7: (-3.783,28.249,113.900)
N9: (-4.184,26.665,112.368)
O5': (-4.787,29.582,109.792)
O3': (-7.347,26.807,109.085)
OP2: (-4.222,31.665,111.025)
C3': (-6.250,27.042,109.964)
C1': (-4.411,26.046,111.066)
C5': (-4.772,28.691,108.683)
O6: (-3.673,27.385,116.870)
O4': (-3.912,26.914,110.063)
C8: (-3.940,27.994,112.627)
C2: (-4.309,24.395,115.068)
C6: (-3.871,26.657,115.888)
C5: (-3.932,27.014,114.516)
C4: (-4.176,26.026,113.582)
P: (-4.128,31.027,109.686)
C4': (-4.985,27.276,109.156)
C2': (-5.886,25.789,110.752)
O2': (-5.981,24.621,109.964)
N1: (-4.073,25.297,116.070)
N2: (-4.484,23.124,115.458)
N3: (-4.371,24.712,113.783)
N7: (-3.783,28.249,113.900)
N9: (-4.184,26.665,112.368)
O5': (-4.787,29.582,109.792)
O3': (-7.347,26.807,109.085)
Image (generated by PyMOL):