Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11604:11733
Extra
PDB:
ATOM 1 O3' U A1603 5.110 27.790 117.039 1.00 55.56 O
ATOM 2 P C A1604 5.205 29.361 117.254 1.00 50.04 P
ATOM 3 OP1 C A1604 6.292 29.847 116.376 1.00 49.74 O
ATOM 4 OP2 C A1604 5.294 29.600 118.713 1.00 50.56 O
ATOM 5 O5' C A1604 3.798 29.872 116.734 1.00 50.23 O
ATOM 6 C5' C A1604 3.423 29.786 115.379 1.00 49.85 C
ATOM 7 C4' C A1604 1.939 29.950 115.234 1.00 50.09 C
ATOM 8 O4' C A1604 1.284 28.984 116.083 1.00 50.19 O
ATOM 9 C3' C A1604 1.367 31.288 115.678 1.00 50.69 C
ATOM 10 O3' C A1604 1.427 32.278 114.666 1.00 50.66 O
ATOM 11 C2' C A1604 -0.053 30.928 116.069 1.00 50.94 C
ATOM 12 O2' C A1604 -0.878 30.843 114.926 1.00 50.72 O
ATOM 13 C1' C A1604 0.120 29.528 116.640 1.00 50.70 C
ATOM 14 N1 C A1604 0.265 29.562 118.096 1.00 51.14 N
ATOM 15 C2 C A1604 -0.891 29.631 118.827 1.00 51.58 C
ATOM 16 O2 C A1604 -1.943 29.625 118.172 1.00 51.56 O
ATOM 17 N3 C A1604 -0.831 29.706 120.171 1.00 52.03 N
ATOM 18 C4 C A1604 0.349 29.730 120.771 1.00 52.03 C
ATOM 19 N4 C A1604 0.446 29.808 122.101 1.00 52.48 N
ATOM 20 C5 C A1604 1.537 29.666 120.016 1.00 51.57 C
ATOM 21 C6 C A1604 1.463 29.594 118.695 1.00 51.14 C
ATOM 22 P G A1605 1.509 33.850 115.046 1.00 61.38 P
ATOM 23 OP1 G A1605 1.854 34.574 113.798 1.00 61.17 O
ATOM 24 OP2 G A1605 2.398 33.989 116.205 1.00 61.62 O
ATOM 25 O5' G A1605 0.029 34.189 115.473 1.00 61.86 O
TER
ATOM 1 O3' C B1732 -8.819 32.143 128.666 1.00 69.97 O
ATOM 2 P G B1733 -9.061 30.615 128.225 1.00 57.93 P
ATOM 3 OP1 G B1733 -10.413 30.240 128.709 1.00 58.28 O
ATOM 4 OP2 G B1733 -7.888 29.832 128.691 1.00 57.65 O
ATOM 5 O5' G B1733 -9.050 30.682 126.632 1.00 57.36 O
ATOM 6 C5' G B1733 -10.022 31.412 125.925 1.00 57.52 C
ATOM 7 C4' G B1733 -9.681 31.489 124.469 1.00 56.96 C
ATOM 8 O4' G B1733 -8.451 32.255 124.290 1.00 56.87 O
ATOM 9 C3' G B1733 -9.394 30.162 123.781 1.00 56.28 C
ATOM 10 O3' G B1733 -10.572 29.446 123.422 1.00 56.21 O
ATOM 11 C2' G B1733 -8.551 30.598 122.584 1.00 55.82 C
ATOM 12 O2' G B1733 -9.371 31.129 121.555 1.00 55.80 O
ATOM 13 C1' G B1733 -7.725 31.742 123.194 1.00 56.19 C
ATOM 14 N9 G B1733 -6.422 31.251 123.671 1.00 55.95 N
ATOM 15 C8 G B1733 -5.959 30.953 124.931 1.00 56.22 C
ATOM 16 N7 G B1733 -4.734 30.475 124.913 1.00 55.84 N
ATOM 17 C5 G B1733 -4.396 30.451 123.556 1.00 55.30 C
ATOM 18 C6 G B1733 -3.221 30.036 122.854 1.00 54.73 C
ATOM 19 O6 G B1733 -2.165 29.581 123.311 1.00 54.57 O
ATOM 20 N1 G B1733 -3.315 30.178 121.473 1.00 54.32 N
ATOM 21 C2 G B1733 -4.400 30.648 120.820 1.00 54.43 C
ATOM 22 N2 G B1733 -4.303 30.693 119.484 1.00 53.99 N
ATOM 23 N3 G B1733 -5.493 31.045 121.447 1.00 54.96 N
ATOM 24 C4 G B1733 -5.428 30.919 122.791 1.00 55.36 C
ATOM 25 P G B1734 -10.491 27.877 123.039 1.00 62.35 P
ATOM 26 OP1 G B1734 -11.878 27.415 122.800 1.00 62.44 O
ATOM 27 OP2 G B1734 -9.699 27.219 124.082 1.00 62.36 O
ATOM 28 O5' G B1734 -9.679 27.862 121.670 1.00 61.71 O
TER
ATOM 2 P C A1604 5.205 29.361 117.254 1.00 50.04 P
ATOM 3 OP1 C A1604 6.292 29.847 116.376 1.00 49.74 O
ATOM 4 OP2 C A1604 5.294 29.600 118.713 1.00 50.56 O
ATOM 5 O5' C A1604 3.798 29.872 116.734 1.00 50.23 O
ATOM 6 C5' C A1604 3.423 29.786 115.379 1.00 49.85 C
ATOM 7 C4' C A1604 1.939 29.950 115.234 1.00 50.09 C
ATOM 8 O4' C A1604 1.284 28.984 116.083 1.00 50.19 O
ATOM 9 C3' C A1604 1.367 31.288 115.678 1.00 50.69 C
ATOM 10 O3' C A1604 1.427 32.278 114.666 1.00 50.66 O
ATOM 11 C2' C A1604 -0.053 30.928 116.069 1.00 50.94 C
ATOM 12 O2' C A1604 -0.878 30.843 114.926 1.00 50.72 O
ATOM 13 C1' C A1604 0.120 29.528 116.640 1.00 50.70 C
ATOM 14 N1 C A1604 0.265 29.562 118.096 1.00 51.14 N
ATOM 15 C2 C A1604 -0.891 29.631 118.827 1.00 51.58 C
ATOM 16 O2 C A1604 -1.943 29.625 118.172 1.00 51.56 O
ATOM 17 N3 C A1604 -0.831 29.706 120.171 1.00 52.03 N
ATOM 18 C4 C A1604 0.349 29.730 120.771 1.00 52.03 C
ATOM 19 N4 C A1604 0.446 29.808 122.101 1.00 52.48 N
ATOM 20 C5 C A1604 1.537 29.666 120.016 1.00 51.57 C
ATOM 21 C6 C A1604 1.463 29.594 118.695 1.00 51.14 C
ATOM 22 P G A1605 1.509 33.850 115.046 1.00 61.38 P
ATOM 23 OP1 G A1605 1.854 34.574 113.798 1.00 61.17 O
ATOM 24 OP2 G A1605 2.398 33.989 116.205 1.00 61.62 O
ATOM 25 O5' G A1605 0.029 34.189 115.473 1.00 61.86 O
TER
ATOM 1 O3' C B1732 -8.819 32.143 128.666 1.00 69.97 O
ATOM 2 P G B1733 -9.061 30.615 128.225 1.00 57.93 P
ATOM 3 OP1 G B1733 -10.413 30.240 128.709 1.00 58.28 O
ATOM 4 OP2 G B1733 -7.888 29.832 128.691 1.00 57.65 O
ATOM 5 O5' G B1733 -9.050 30.682 126.632 1.00 57.36 O
ATOM 6 C5' G B1733 -10.022 31.412 125.925 1.00 57.52 C
ATOM 7 C4' G B1733 -9.681 31.489 124.469 1.00 56.96 C
ATOM 8 O4' G B1733 -8.451 32.255 124.290 1.00 56.87 O
ATOM 9 C3' G B1733 -9.394 30.162 123.781 1.00 56.28 C
ATOM 10 O3' G B1733 -10.572 29.446 123.422 1.00 56.21 O
ATOM 11 C2' G B1733 -8.551 30.598 122.584 1.00 55.82 C
ATOM 12 O2' G B1733 -9.371 31.129 121.555 1.00 55.80 O
ATOM 13 C1' G B1733 -7.725 31.742 123.194 1.00 56.19 C
ATOM 14 N9 G B1733 -6.422 31.251 123.671 1.00 55.95 N
ATOM 15 C8 G B1733 -5.959 30.953 124.931 1.00 56.22 C
ATOM 16 N7 G B1733 -4.734 30.475 124.913 1.00 55.84 N
ATOM 17 C5 G B1733 -4.396 30.451 123.556 1.00 55.30 C
ATOM 18 C6 G B1733 -3.221 30.036 122.854 1.00 54.73 C
ATOM 19 O6 G B1733 -2.165 29.581 123.311 1.00 54.57 O
ATOM 20 N1 G B1733 -3.315 30.178 121.473 1.00 54.32 N
ATOM 21 C2 G B1733 -4.400 30.648 120.820 1.00 54.43 C
ATOM 22 N2 G B1733 -4.303 30.693 119.484 1.00 53.99 N
ATOM 23 N3 G B1733 -5.493 31.045 121.447 1.00 54.96 N
ATOM 24 C4 G B1733 -5.428 30.919 122.791 1.00 55.36 C
ATOM 25 P G B1734 -10.491 27.877 123.039 1.00 62.35 P
ATOM 26 OP1 G B1734 -11.878 27.415 122.800 1.00 62.44 O
ATOM 27 OP2 G B1734 -9.699 27.219 124.082 1.00 62.36 O
ATOM 28 O5' G B1734 -9.679 27.862 121.670 1.00 61.71 O
TER
Atoms:
C2: (-0.891,29.631,118.827)
OP1: (6.292,29.847,116.376)
OP2: (5.294,29.600,118.713)
C4: (0.349,29.730,120.771)
O5': (3.798,29.872,116.734)
C3': (1.367,31.288,115.678)
C1': (0.120,29.528,116.640)
O4': (1.284,28.984,116.083)
C5': (3.423,29.786,115.379)
P: (5.205,29.361,117.254)
O2: (-1.943,29.625,118.172)
C4': (1.939,29.950,115.234)
C2': (-0.053,30.928,116.069)
O2': (-0.878,30.843,114.926)
N1: (0.265,29.562,118.096)
N3: (-0.831,29.706,120.171)
N4: (0.446,29.808,122.101)
C6: (1.463,29.594,118.695)
C5: (1.537,29.666,120.016)
O3': (1.427,32.278,114.666)
OP1: (6.292,29.847,116.376)
OP2: (5.294,29.600,118.713)
C4: (0.349,29.730,120.771)
O5': (3.798,29.872,116.734)
C3': (1.367,31.288,115.678)
C1': (0.120,29.528,116.640)
O4': (1.284,28.984,116.083)
C5': (3.423,29.786,115.379)
P: (5.205,29.361,117.254)
O2: (-1.943,29.625,118.172)
C4': (1.939,29.950,115.234)
C2': (-0.053,30.928,116.069)
O2': (-0.878,30.843,114.926)
N1: (0.265,29.562,118.096)
N3: (-0.831,29.706,120.171)
N4: (0.446,29.808,122.101)
C6: (1.463,29.594,118.695)
C5: (1.537,29.666,120.016)
O3': (1.427,32.278,114.666)
OP1: (-10.413,30.240,128.709)
OP2: (-7.888,29.832,128.691)
C3': (-9.394,30.162,123.781)
C1': (-7.725,31.742,123.194)
C5': (-10.022,31.412,125.925)
O6: (-2.165,29.581,123.311)
O4': (-8.451,32.255,124.290)
C8: (-5.959,30.953,124.931)
C2: (-4.400,30.648,120.820)
C6: (-3.221,30.036,122.854)
C5: (-4.396,30.451,123.556)
C4: (-5.428,30.919,122.791)
P: (-9.061,30.615,128.225)
C4': (-9.681,31.489,124.469)
C2': (-8.551,30.598,122.584)
O2': (-9.371,31.129,121.555)
N1: (-3.315,30.178,121.473)
N2: (-4.303,30.693,119.484)
N3: (-5.493,31.045,121.447)
N7: (-4.734,30.475,124.913)
N9: (-6.422,31.251,123.671)
O5': (-9.050,30.682,126.632)
O3': (-10.572,29.446,123.422)
OP2: (-7.888,29.832,128.691)
C3': (-9.394,30.162,123.781)
C1': (-7.725,31.742,123.194)
C5': (-10.022,31.412,125.925)
O6: (-2.165,29.581,123.311)
O4': (-8.451,32.255,124.290)
C8: (-5.959,30.953,124.931)
C2: (-4.400,30.648,120.820)
C6: (-3.221,30.036,122.854)
C5: (-4.396,30.451,123.556)
C4: (-5.428,30.919,122.791)
P: (-9.061,30.615,128.225)
C4': (-9.681,31.489,124.469)
C2': (-8.551,30.598,122.584)
O2': (-9.371,31.129,121.555)
N1: (-3.315,30.178,121.473)
N2: (-4.303,30.693,119.484)
N3: (-5.493,31.045,121.447)
N7: (-4.734,30.475,124.913)
N9: (-6.422,31.251,123.671)
O5': (-9.050,30.682,126.632)
O3': (-10.572,29.446,123.422)
Image (generated by PyMOL):