ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQM:01953:02468

Extra

PDB:
ATOM 1 O3' C A1952 100.869 106.050 106.268 1.00 74.29 O
ATOM 2 P A A1953 101.362 105.828 104.753 1.00 75.30 P
ATOM 3 OP1 A A1953 100.169 105.612 103.889 1.00 74.67 O
ATOM 4 OP2 A A1953 102.439 104.801 104.793 1.00 75.39 O
ATOM 5 O5' A A1953 102.022 107.224 104.364 1.00 74.26 O
ATOM 6 C5' A A1953 102.766 107.382 103.147 1.00 71.12 C
ATOM 7 C4' A A1953 102.490 108.739 102.545 1.00 69.79 C
ATOM 8 O4' A A1953 101.142 108.775 102.003 1.00 68.32 O
ATOM 9 C3' A A1953 102.585 109.917 103.502 1.00 68.99 C
ATOM 10 O3' A A1953 103.018 111.042 102.761 1.00 70.19 O
ATOM 11 C2' A A1953 101.134 110.118 103.930 1.00 67.61 C
ATOM 12 O2' A A1953 100.868 111.443 104.346 1.00 66.36 O
ATOM 13 C1' A A1953 100.399 109.803 102.629 1.00 65.93 C
ATOM 14 N9 A A1953 99.027 109.321 102.789 1.00 63.81 N
ATOM 15 C8 A A1953 98.620 108.113 103.296 1.00 63.56 C
ATOM 16 N7 A A1953 97.323 107.934 103.256 1.00 64.11 N
ATOM 17 C5 A A1953 96.842 109.107 102.695 1.00 63.17 C
ATOM 18 C6 A A1953 95.547 109.534 102.371 1.00 63.97 C
ATOM 19 N6 A A1953 94.456 108.787 102.563 1.00 66.06 N
ATOM 20 N1 A A1953 95.405 110.765 101.830 1.00 62.80 N
ATOM 21 C2 A A1953 96.500 111.500 101.629 1.00 61.51 C
ATOM 22 N3 A A1953 97.772 111.203 101.884 1.00 61.91 N
ATOM 23 C4 A A1953 97.877 109.978 102.421 1.00 62.16 C
ATOM 24 P U A1954 104.401 111.760 103.132 1.00 71.69 P
ATOM 25 OP1 U A1954 105.514 111.025 102.466 1.00 70.03 O
ATOM 26 OP2 U A1954 104.448 111.988 104.596 1.00 71.76 O
ATOM 27 O5' U A1954 104.221 113.194 102.473 1.00 71.21 O
TER

ATOM 1 O3' C B2467 101.476 118.904 97.071 1.00 46.80 O
ATOM 2 P G B2468 101.773 117.454 96.440 1.00 46.67 P
ATOM 3 OP1 G B2468 103.246 117.276 96.542 1.00 48.95 O
ATOM 4 OP2 G B2468 101.116 117.356 95.117 1.00 46.82 O
ATOM 5 O5' G B2468 101.057 116.438 97.440 1.00 46.30 O
ATOM 6 C5' G B2468 101.517 116.279 98.797 1.00 43.14 C
ATOM 7 C4' G B2468 100.598 115.347 99.558 1.00 44.23 C
ATOM 8 O4' G B2468 99.313 115.981 99.801 1.00 42.18 O
ATOM 9 C3' G B2468 100.249 114.055 98.839 1.00 43.09 C
ATOM 10 O3' G B2468 101.263 113.082 98.999 1.00 46.78 O
ATOM 11 C2' G B2468 98.943 113.662 99.509 1.00 42.34 C
ATOM 12 O2' G B2468 99.159 113.131 100.797 1.00 42.67 O
ATOM 13 C1' G B2468 98.270 115.027 99.652 1.00 42.56 C
ATOM 14 N9 G B2468 97.501 115.392 98.466 1.00 42.40 N
ATOM 15 C8 G B2468 97.958 116.112 97.389 1.00 41.71 C
ATOM 16 N7 G B2468 97.048 116.303 96.477 1.00 42.42 N
ATOM 17 C5 G B2468 95.921 115.666 96.974 1.00 41.38 C
ATOM 18 C6 G B2468 94.619 115.529 96.412 1.00 41.52 C
ATOM 19 O6 G B2468 94.196 115.961 95.330 1.00 37.84 O
ATOM 20 N1 G B2468 93.777 114.804 97.246 1.00 39.97 N
ATOM 21 C2 G B2468 94.137 114.279 98.463 1.00 41.94 C
ATOM 22 N2 G B2468 93.179 113.624 99.126 1.00 41.27 N
ATOM 23 N3 G B2468 95.349 114.393 98.995 1.00 43.02 N
ATOM 24 C4 G B2468 96.183 115.095 98.201 1.00 41.72 C
ATOM 25 P U B2469 101.561 112.046 97.812 1.00 48.11 P
ATOM 26 OP1 U B2469 102.732 111.244 98.226 1.00 50.08 O
ATOM 27 OP2 U B2469 101.592 112.776 96.517 1.00 48.12 O
ATOM 28 O5' U B2469 100.279 111.103 97.807 1.00 48.70 O
TER

Atoms:
OP1: (100.169,105.612,103.889)
OP2: (102.439,104.801,104.793)
C3': (102.585,109.917,103.502)
C1': (100.399,109.803,102.629)
C5': (102.766,107.382,103.147)
O4': (101.142,108.775,102.003)
C8: (98.620,108.113,103.296)
O2': (100.868,111.443,104.346)
C6: (95.547,109.534,102.371)
C5: (96.842,109.107,102.695)
C4: (97.877,109.978,102.421)
P: (101.362,105.828,104.753)
C4': (102.490,108.739,102.545)
C2': (101.134,110.118,103.930)
C2: (96.500,111.500,101.629)
N1: (95.405,110.765,101.830)
N3: (97.772,111.203,101.884)
N6: (94.456,108.787,102.563)
N7: (97.323,107.934,103.256)
N9: (99.027,109.321,102.789)
O5': (102.022,107.224,104.364)
O3': (103.018,111.042,102.761)
OP1: (103.246,117.276,96.542)
OP2: (101.116,117.356,95.117)
C3': (100.249,114.055,98.839)
C1': (98.270,115.027,99.652)
C5': (101.517,116.279,98.797)
O6: (94.196,115.961,95.330)
O4': (99.313,115.981,99.801)
C8: (97.958,116.112,97.389)
C2: (94.137,114.279,98.463)
C6: (94.619,115.529,96.412)
C5: (95.921,115.666,96.974)
C4: (96.183,115.095,98.201)
P: (101.773,117.454,96.440)
C4': (100.598,115.347,99.558)
C2': (98.943,113.662,99.509)
O2': (99.159,113.131,100.797)
N1: (93.777,114.804,97.246)
N2: (93.179,113.624,99.126)
N3: (95.349,114.393,98.995)
N7: (97.048,116.303,96.477)
N9: (97.501,115.392,98.466)
O5': (101.057,116.438,97.440)
O3': (101.263,113.082,98.999)
Image (generated by PyMOL):
PyMOL image
show in jmol