Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2RD2:B55:B57
Extra
PDB:
ATOM 1 O3' G A 54 5.271 37.376 36.249 1.00123.18 O
ATOM 2 P A A 55 6.832 37.673 36.479 1.00136.39 P
ATOM 3 OP1 A A 55 7.396 36.570 37.298 1.00103.05 O
ATOM 4 OP2 A A 55 6.962 39.078 36.947 1.00 95.85 O
ATOM 5 O5' A A 55 7.454 37.586 35.014 1.00134.71 O
ATOM 6 C5' A A 55 7.306 36.410 34.215 1.00128.96 C
ATOM 7 C4' A A 55 8.634 36.041 33.604 1.00122.37 C
ATOM 8 O4' A A 55 9.100 37.162 32.821 1.00122.67 O
ATOM 9 C3' A A 55 9.714 35.761 34.638 1.00116.73 C
ATOM 10 O3' A A 55 9.780 34.352 34.827 1.00111.76 O
ATOM 11 C2' A A 55 10.990 36.288 33.997 1.00118.09 C
ATOM 12 O2' A A 55 11.662 35.300 33.243 1.00122.47 O
ATOM 13 C1' A A 55 10.463 37.406 33.091 1.00119.36 C
ATOM 14 N9 A A 55 10.565 38.763 33.619 1.00 80.00 N
ATOM 15 C8 A A 55 10.454 39.201 34.912 1.00 75.32 C
ATOM 16 N7 A A 55 10.564 40.503 35.037 1.00 75.96 N
ATOM 17 C5 A A 55 10.770 40.949 33.738 1.00 75.38 C
ATOM 18 C6 A A 55 10.962 42.235 33.190 1.00 75.06 C
ATOM 19 N6 A A 55 10.978 43.357 33.916 1.00 79.44 N
ATOM 20 N1 A A 55 11.139 42.329 31.851 1.00 72.98 N
ATOM 21 C2 A A 55 11.123 41.206 31.123 1.00 69.51 C
ATOM 22 N3 A A 55 10.952 39.946 31.522 1.00 69.33 N
ATOM 23 C4 A A 55 10.780 39.887 32.856 1.00 75.89 C
ATOM 24 P A A 56 10.867 33.729 35.826 1.00 90.75 P
ATOM 25 OP1 A A 56 10.396 32.369 36.209 1.00102.33 O
ATOM 26 OP2 A A 56 11.127 34.747 36.885 1.00 94.95 O
ATOM 27 O5' A A 56 12.179 33.570 34.928 1.00 88.35 O
TER
ATOM 1 O3' A B 56 15.380 35.542 34.485 1.00 89.74 O
ATOM 2 P U B 57 15.388 37.078 34.011 1.00 80.61 P
ATOM 3 OP1 U B 57 16.229 37.853 34.962 1.00 77.66 O
ATOM 4 OP2 U B 57 13.978 37.480 33.784 1.00 77.34 O
ATOM 5 O5' U B 57 16.129 37.052 32.598 1.00 77.90 O
ATOM 6 C5' U B 57 16.067 38.175 31.721 1.00 74.76 C
ATOM 7 C4' U B 57 15.820 37.715 30.305 1.00 74.69 C
ATOM 8 O4' U B 57 14.832 36.665 30.316 1.00 72.66 O
ATOM 9 C3' U B 57 15.278 38.788 29.364 1.00 78.13 C
ATOM 10 O3' U B 57 16.353 39.369 28.616 1.00 86.72 O
ATOM 11 C2' U B 57 14.386 38.013 28.377 1.00 80.13 C
ATOM 12 O2' U B 57 14.992 37.779 27.121 1.00 85.71 O
ATOM 13 C1' U B 57 14.169 36.666 29.078 1.00 76.92 C
ATOM 14 N1 U B 57 12.803 36.157 29.245 1.00 72.82 N
ATOM 15 C2 U B 57 12.061 35.952 28.102 1.00 75.53 C
ATOM 16 O2 U B 57 12.452 36.278 26.999 1.00 76.55 O
ATOM 17 N3 U B 57 10.841 35.355 28.299 1.00 77.40 N
ATOM 18 C4 U B 57 10.293 34.970 29.503 1.00 79.36 C
ATOM 19 O4 U B 57 9.253 34.314 29.509 1.00 86.31 O
ATOM 20 C5 U B 57 11.095 35.275 30.642 1.00 75.98 C
ATOM 21 C6 U B 57 12.293 35.847 30.480 1.00 71.33 C
ATOM 22 P C B 58 17.298 40.496 29.272 1.00111.98 P
ATOM 23 OP1 C B 58 18.247 40.944 28.219 1.00 78.48 O
ATOM 24 OP2 C B 58 17.826 39.986 30.566 1.00 83.45 O
ATOM 25 O5' C B 58 16.312 41.709 29.566 1.00114.71 O
TER
ATOM 2 P A A 55 6.832 37.673 36.479 1.00136.39 P
ATOM 3 OP1 A A 55 7.396 36.570 37.298 1.00103.05 O
ATOM 4 OP2 A A 55 6.962 39.078 36.947 1.00 95.85 O
ATOM 5 O5' A A 55 7.454 37.586 35.014 1.00134.71 O
ATOM 6 C5' A A 55 7.306 36.410 34.215 1.00128.96 C
ATOM 7 C4' A A 55 8.634 36.041 33.604 1.00122.37 C
ATOM 8 O4' A A 55 9.100 37.162 32.821 1.00122.67 O
ATOM 9 C3' A A 55 9.714 35.761 34.638 1.00116.73 C
ATOM 10 O3' A A 55 9.780 34.352 34.827 1.00111.76 O
ATOM 11 C2' A A 55 10.990 36.288 33.997 1.00118.09 C
ATOM 12 O2' A A 55 11.662 35.300 33.243 1.00122.47 O
ATOM 13 C1' A A 55 10.463 37.406 33.091 1.00119.36 C
ATOM 14 N9 A A 55 10.565 38.763 33.619 1.00 80.00 N
ATOM 15 C8 A A 55 10.454 39.201 34.912 1.00 75.32 C
ATOM 16 N7 A A 55 10.564 40.503 35.037 1.00 75.96 N
ATOM 17 C5 A A 55 10.770 40.949 33.738 1.00 75.38 C
ATOM 18 C6 A A 55 10.962 42.235 33.190 1.00 75.06 C
ATOM 19 N6 A A 55 10.978 43.357 33.916 1.00 79.44 N
ATOM 20 N1 A A 55 11.139 42.329 31.851 1.00 72.98 N
ATOM 21 C2 A A 55 11.123 41.206 31.123 1.00 69.51 C
ATOM 22 N3 A A 55 10.952 39.946 31.522 1.00 69.33 N
ATOM 23 C4 A A 55 10.780 39.887 32.856 1.00 75.89 C
ATOM 24 P A A 56 10.867 33.729 35.826 1.00 90.75 P
ATOM 25 OP1 A A 56 10.396 32.369 36.209 1.00102.33 O
ATOM 26 OP2 A A 56 11.127 34.747 36.885 1.00 94.95 O
ATOM 27 O5' A A 56 12.179 33.570 34.928 1.00 88.35 O
TER
ATOM 1 O3' A B 56 15.380 35.542 34.485 1.00 89.74 O
ATOM 2 P U B 57 15.388 37.078 34.011 1.00 80.61 P
ATOM 3 OP1 U B 57 16.229 37.853 34.962 1.00 77.66 O
ATOM 4 OP2 U B 57 13.978 37.480 33.784 1.00 77.34 O
ATOM 5 O5' U B 57 16.129 37.052 32.598 1.00 77.90 O
ATOM 6 C5' U B 57 16.067 38.175 31.721 1.00 74.76 C
ATOM 7 C4' U B 57 15.820 37.715 30.305 1.00 74.69 C
ATOM 8 O4' U B 57 14.832 36.665 30.316 1.00 72.66 O
ATOM 9 C3' U B 57 15.278 38.788 29.364 1.00 78.13 C
ATOM 10 O3' U B 57 16.353 39.369 28.616 1.00 86.72 O
ATOM 11 C2' U B 57 14.386 38.013 28.377 1.00 80.13 C
ATOM 12 O2' U B 57 14.992 37.779 27.121 1.00 85.71 O
ATOM 13 C1' U B 57 14.169 36.666 29.078 1.00 76.92 C
ATOM 14 N1 U B 57 12.803 36.157 29.245 1.00 72.82 N
ATOM 15 C2 U B 57 12.061 35.952 28.102 1.00 75.53 C
ATOM 16 O2 U B 57 12.452 36.278 26.999 1.00 76.55 O
ATOM 17 N3 U B 57 10.841 35.355 28.299 1.00 77.40 N
ATOM 18 C4 U B 57 10.293 34.970 29.503 1.00 79.36 C
ATOM 19 O4 U B 57 9.253 34.314 29.509 1.00 86.31 O
ATOM 20 C5 U B 57 11.095 35.275 30.642 1.00 75.98 C
ATOM 21 C6 U B 57 12.293 35.847 30.480 1.00 71.33 C
ATOM 22 P C B 58 17.298 40.496 29.272 1.00111.98 P
ATOM 23 OP1 C B 58 18.247 40.944 28.219 1.00 78.48 O
ATOM 24 OP2 C B 58 17.826 39.986 30.566 1.00 83.45 O
ATOM 25 O5' C B 58 16.312 41.709 29.566 1.00114.71 O
TER
Atoms:
OP1: (7.396,36.570,37.298)
OP2: (6.962,39.078,36.947)
C3': (9.714,35.761,34.638)
C1': (10.463,37.406,33.091)
C5': (7.306,36.410,34.215)
O4': (9.100,37.162,32.821)
C8: (10.454,39.201,34.912)
O2': (11.662,35.300,33.243)
C6: (10.962,42.235,33.190)
C5: (10.770,40.949,33.738)
C4: (10.780,39.887,32.856)
P: (6.832,37.673,36.479)
C4': (8.634,36.041,33.604)
C2': (10.990,36.288,33.997)
C2: (11.123,41.206,31.123)
N1: (11.139,42.329,31.851)
N3: (10.952,39.946,31.522)
N6: (10.978,43.357,33.916)
N7: (10.564,40.503,35.037)
N9: (10.565,38.763,33.619)
O5': (7.454,37.586,35.014)
O3': (9.780,34.352,34.827)
OP2: (6.962,39.078,36.947)
C3': (9.714,35.761,34.638)
C1': (10.463,37.406,33.091)
C5': (7.306,36.410,34.215)
O4': (9.100,37.162,32.821)
C8: (10.454,39.201,34.912)
O2': (11.662,35.300,33.243)
C6: (10.962,42.235,33.190)
C5: (10.770,40.949,33.738)
C4: (10.780,39.887,32.856)
P: (6.832,37.673,36.479)
C4': (8.634,36.041,33.604)
C2': (10.990,36.288,33.997)
C2: (11.123,41.206,31.123)
N1: (11.139,42.329,31.851)
N3: (10.952,39.946,31.522)
N6: (10.978,43.357,33.916)
N7: (10.564,40.503,35.037)
N9: (10.565,38.763,33.619)
O5': (7.454,37.586,35.014)
O3': (9.780,34.352,34.827)
C4: (10.293,34.970,29.503)
N3: (10.841,35.355,28.299)
OP1: (16.229,37.853,34.962)
OP2: (13.978,37.480,33.784)
C2: (12.061,35.952,28.102)
C1': (14.169,36.666,29.078)
C3': (15.278,38.788,29.364)
O5': (16.129,37.052,32.598)
O4': (14.832,36.665,30.316)
C5': (16.067,38.175,31.721)
P: (15.388,37.078,34.011)
C4': (15.820,37.715,30.305)
C2': (14.386,38.013,28.377)
O2': (14.992,37.779,27.121)
N1: (12.803,36.157,29.245)
O4: (9.253,34.314,29.509)
O2: (12.452,36.278,26.999)
C6: (12.293,35.847,30.480)
C5: (11.095,35.275,30.642)
O3': (16.353,39.369,28.616)
N3: (10.841,35.355,28.299)
OP1: (16.229,37.853,34.962)
OP2: (13.978,37.480,33.784)
C2: (12.061,35.952,28.102)
C1': (14.169,36.666,29.078)
C3': (15.278,38.788,29.364)
O5': (16.129,37.052,32.598)
O4': (14.832,36.665,30.316)
C5': (16.067,38.175,31.721)
P: (15.388,37.078,34.011)
C4': (15.820,37.715,30.305)
C2': (14.386,38.013,28.377)
O2': (14.992,37.779,27.121)
N1: (12.803,36.157,29.245)
O4: (9.253,34.314,29.509)
O2: (12.452,36.278,26.999)
C6: (12.293,35.847,30.480)
C5: (11.095,35.275,30.642)
O3': (16.353,39.369,28.616)
Image (generated by PyMOL):