Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXD:A2:A85
Extra
PDB:
ATOM 1 O3' G A 1 3.558 -37.637 -7.268 1.00102.76 O
ATOM 2 P C A 2 4.389 -37.069 -6.025 1.00100.31 P
ATOM 3 OP1 C A 2 5.515 -37.996 -5.770 1.00 99.94 O
ATOM 4 OP2 C A 2 3.437 -36.740 -4.938 1.00 98.93 O
ATOM 5 O5' C A 2 4.973 -35.693 -6.593 1.00100.16 O
ATOM 6 C5' C A 2 5.811 -35.673 -7.747 1.00100.53 C
ATOM 7 C4' C A 2 5.981 -34.248 -8.239 1.00100.44 C
ATOM 8 O4' C A 2 4.698 -33.700 -8.637 1.00101.18 O
ATOM 9 C3' C A 2 6.465 -33.263 -7.187 1.00 98.45 C
ATOM 10 O3' C A 2 7.869 -33.374 -6.978 1.00 96.84 O
ATOM 11 C2' C A 2 6.048 -31.934 -7.810 1.00 99.61 C
ATOM 12 O2' C A 2 6.932 -31.483 -8.820 1.00100.84 O
ATOM 13 C1' C A 2 4.686 -32.300 -8.401 1.00100.71 C
ATOM 14 N1 C A 2 3.530 -31.921 -7.508 1.00 99.79 N
ATOM 15 C2 C A 2 3.028 -30.607 -7.537 1.00100.16 C
ATOM 16 O2 C A 2 3.529 -29.769 -8.297 1.00101.28 O
ATOM 17 N3 C A 2 1.986 -30.280 -6.726 1.00 99.52 N
ATOM 18 C4 C A 2 1.451 -31.193 -5.910 1.00 98.33 C
ATOM 19 N4 C A 2 0.429 -30.815 -5.136 1.00 97.40 N
ATOM 20 C5 C A 2 1.944 -32.534 -5.859 1.00 98.04 C
ATOM 21 C6 C A 2 2.971 -32.847 -6.664 1.00 98.77 C
ATOM 22 P U A 3 8.466 -33.131 -5.512 1.00 94.04 P
ATOM 23 OP1 U A 3 9.889 -33.535 -5.527 1.00 93.60 O
ATOM 24 OP2 U A 3 7.552 -33.738 -4.518 1.00 93.10 O
ATOM 25 O5' U A 3 8.363 -31.539 -5.373 1.00 93.30 O
TER
ATOM 1 O3' A B 84 -1.296 -19.214 -1.448 1.00 97.21 O
ATOM 2 P G B 85 -2.156 -19.366 -2.790 1.00100.48 P
ATOM 3 OP1 G B 85 -2.433 -18.003 -3.294 1.00102.49 O
ATOM 4 OP2 G B 85 -3.296 -20.275 -2.533 1.00 99.65 O
ATOM 5 O5' G B 85 -1.128 -20.101 -3.776 1.00101.95 O
ATOM 6 C5' G B 85 -0.063 -19.353 -4.352 1.00105.17 C
ATOM 7 C4' G B 85 0.899 -20.225 -5.138 1.00106.85 C
ATOM 8 O4' G B 85 1.339 -21.361 -4.349 1.00105.33 O
ATOM 9 C3' G B 85 0.346 -20.904 -6.382 1.00109.06 C
ATOM 10 O3' G B 85 0.145 -20.005 -7.460 1.00112.89 O
ATOM 11 C2' G B 85 1.481 -21.880 -6.659 1.00108.20 C
ATOM 12 O2' G B 85 2.630 -21.265 -7.213 1.00108.79 O
ATOM 13 C1' G B 85 1.744 -22.391 -5.241 1.00105.79 C
ATOM 14 N9 G B 85 0.998 -23.620 -4.962 1.00104.70 N
ATOM 15 C8 G B 85 -0.189 -23.735 -4.275 1.00104.01 C
ATOM 16 N7 G B 85 -0.625 -24.961 -4.192 1.00103.42 N
ATOM 17 C5 G B 85 0.328 -25.713 -4.870 1.00103.39 C
ATOM 18 C6 G B 85 0.395 -27.110 -5.112 1.00102.82 C
ATOM 19 O6 G B 85 -0.400 -27.991 -4.763 1.00102.30 O
ATOM 20 N1 G B 85 1.527 -27.465 -5.842 1.00103.18 N
ATOM 21 C2 G B 85 2.477 -26.577 -6.288 1.00103.92 C
ATOM 22 N2 G B 85 3.499 -27.104 -6.976 1.00104.30 N
ATOM 23 N3 G B 85 2.431 -25.267 -6.066 1.00104.41 N
ATOM 24 C4 G B 85 1.332 -24.901 -5.353 1.00104.17 C
ATOM 25 P U B 86 -1.109 -20.218 -8.437 1.00115.94 P
ATOM 26 OP1 U B 86 -0.759 -19.579 -9.727 1.00118.25 O
ATOM 27 OP2 U B 86 -2.327 -19.790 -7.709 1.00115.44 O
ATOM 28 O5' U B 86 -1.197 -21.810 -8.619 1.00116.00 O
TER
ATOM 2 P C A 2 4.389 -37.069 -6.025 1.00100.31 P
ATOM 3 OP1 C A 2 5.515 -37.996 -5.770 1.00 99.94 O
ATOM 4 OP2 C A 2 3.437 -36.740 -4.938 1.00 98.93 O
ATOM 5 O5' C A 2 4.973 -35.693 -6.593 1.00100.16 O
ATOM 6 C5' C A 2 5.811 -35.673 -7.747 1.00100.53 C
ATOM 7 C4' C A 2 5.981 -34.248 -8.239 1.00100.44 C
ATOM 8 O4' C A 2 4.698 -33.700 -8.637 1.00101.18 O
ATOM 9 C3' C A 2 6.465 -33.263 -7.187 1.00 98.45 C
ATOM 10 O3' C A 2 7.869 -33.374 -6.978 1.00 96.84 O
ATOM 11 C2' C A 2 6.048 -31.934 -7.810 1.00 99.61 C
ATOM 12 O2' C A 2 6.932 -31.483 -8.820 1.00100.84 O
ATOM 13 C1' C A 2 4.686 -32.300 -8.401 1.00100.71 C
ATOM 14 N1 C A 2 3.530 -31.921 -7.508 1.00 99.79 N
ATOM 15 C2 C A 2 3.028 -30.607 -7.537 1.00100.16 C
ATOM 16 O2 C A 2 3.529 -29.769 -8.297 1.00101.28 O
ATOM 17 N3 C A 2 1.986 -30.280 -6.726 1.00 99.52 N
ATOM 18 C4 C A 2 1.451 -31.193 -5.910 1.00 98.33 C
ATOM 19 N4 C A 2 0.429 -30.815 -5.136 1.00 97.40 N
ATOM 20 C5 C A 2 1.944 -32.534 -5.859 1.00 98.04 C
ATOM 21 C6 C A 2 2.971 -32.847 -6.664 1.00 98.77 C
ATOM 22 P U A 3 8.466 -33.131 -5.512 1.00 94.04 P
ATOM 23 OP1 U A 3 9.889 -33.535 -5.527 1.00 93.60 O
ATOM 24 OP2 U A 3 7.552 -33.738 -4.518 1.00 93.10 O
ATOM 25 O5' U A 3 8.363 -31.539 -5.373 1.00 93.30 O
TER
ATOM 1 O3' A B 84 -1.296 -19.214 -1.448 1.00 97.21 O
ATOM 2 P G B 85 -2.156 -19.366 -2.790 1.00100.48 P
ATOM 3 OP1 G B 85 -2.433 -18.003 -3.294 1.00102.49 O
ATOM 4 OP2 G B 85 -3.296 -20.275 -2.533 1.00 99.65 O
ATOM 5 O5' G B 85 -1.128 -20.101 -3.776 1.00101.95 O
ATOM 6 C5' G B 85 -0.063 -19.353 -4.352 1.00105.17 C
ATOM 7 C4' G B 85 0.899 -20.225 -5.138 1.00106.85 C
ATOM 8 O4' G B 85 1.339 -21.361 -4.349 1.00105.33 O
ATOM 9 C3' G B 85 0.346 -20.904 -6.382 1.00109.06 C
ATOM 10 O3' G B 85 0.145 -20.005 -7.460 1.00112.89 O
ATOM 11 C2' G B 85 1.481 -21.880 -6.659 1.00108.20 C
ATOM 12 O2' G B 85 2.630 -21.265 -7.213 1.00108.79 O
ATOM 13 C1' G B 85 1.744 -22.391 -5.241 1.00105.79 C
ATOM 14 N9 G B 85 0.998 -23.620 -4.962 1.00104.70 N
ATOM 15 C8 G B 85 -0.189 -23.735 -4.275 1.00104.01 C
ATOM 16 N7 G B 85 -0.625 -24.961 -4.192 1.00103.42 N
ATOM 17 C5 G B 85 0.328 -25.713 -4.870 1.00103.39 C
ATOM 18 C6 G B 85 0.395 -27.110 -5.112 1.00102.82 C
ATOM 19 O6 G B 85 -0.400 -27.991 -4.763 1.00102.30 O
ATOM 20 N1 G B 85 1.527 -27.465 -5.842 1.00103.18 N
ATOM 21 C2 G B 85 2.477 -26.577 -6.288 1.00103.92 C
ATOM 22 N2 G B 85 3.499 -27.104 -6.976 1.00104.30 N
ATOM 23 N3 G B 85 2.431 -25.267 -6.066 1.00104.41 N
ATOM 24 C4 G B 85 1.332 -24.901 -5.353 1.00104.17 C
ATOM 25 P U B 86 -1.109 -20.218 -8.437 1.00115.94 P
ATOM 26 OP1 U B 86 -0.759 -19.579 -9.727 1.00118.25 O
ATOM 27 OP2 U B 86 -2.327 -19.790 -7.709 1.00115.44 O
ATOM 28 O5' U B 86 -1.197 -21.810 -8.619 1.00116.00 O
TER
Atoms:
C2: (3.028,-30.607,-7.537)
OP1: (5.515,-37.996,-5.770)
OP2: (3.437,-36.740,-4.938)
C4: (1.451,-31.193,-5.910)
O5': (4.973,-35.693,-6.593)
C3': (6.465,-33.263,-7.187)
C1': (4.686,-32.300,-8.401)
O4': (4.698,-33.700,-8.637)
C5': (5.811,-35.673,-7.747)
P: (4.389,-37.069,-6.025)
O2: (3.529,-29.769,-8.297)
C4': (5.981,-34.248,-8.239)
C2': (6.048,-31.934,-7.810)
O2': (6.932,-31.483,-8.820)
N1: (3.530,-31.921,-7.508)
N3: (1.986,-30.280,-6.726)
N4: (0.429,-30.815,-5.136)
C6: (2.971,-32.847,-6.664)
C5: (1.944,-32.534,-5.859)
O3': (7.869,-33.374,-6.978)
OP1: (5.515,-37.996,-5.770)
OP2: (3.437,-36.740,-4.938)
C4: (1.451,-31.193,-5.910)
O5': (4.973,-35.693,-6.593)
C3': (6.465,-33.263,-7.187)
C1': (4.686,-32.300,-8.401)
O4': (4.698,-33.700,-8.637)
C5': (5.811,-35.673,-7.747)
P: (4.389,-37.069,-6.025)
O2: (3.529,-29.769,-8.297)
C4': (5.981,-34.248,-8.239)
C2': (6.048,-31.934,-7.810)
O2': (6.932,-31.483,-8.820)
N1: (3.530,-31.921,-7.508)
N3: (1.986,-30.280,-6.726)
N4: (0.429,-30.815,-5.136)
C6: (2.971,-32.847,-6.664)
C5: (1.944,-32.534,-5.859)
O3': (7.869,-33.374,-6.978)
OP1: (-2.433,-18.003,-3.294)
OP2: (-3.296,-20.275,-2.533)
C3': (0.346,-20.904,-6.382)
C1': (1.744,-22.391,-5.241)
C5': (-0.063,-19.353,-4.352)
O6: (-0.400,-27.991,-4.763)
O4': (1.339,-21.361,-4.349)
C8: (-0.189,-23.735,-4.275)
C2: (2.477,-26.577,-6.288)
C6: (0.395,-27.110,-5.112)
C5: (0.328,-25.713,-4.870)
C4: (1.332,-24.901,-5.353)
P: (-2.156,-19.366,-2.790)
C4': (0.899,-20.225,-5.138)
C2': (1.481,-21.880,-6.659)
O2': (2.630,-21.265,-7.213)
N1: (1.527,-27.465,-5.842)
N2: (3.499,-27.104,-6.976)
N3: (2.431,-25.267,-6.066)
N7: (-0.625,-24.961,-4.192)
N9: (0.998,-23.620,-4.962)
O5': (-1.128,-20.101,-3.776)
O3': (0.145,-20.005,-7.460)
OP2: (-3.296,-20.275,-2.533)
C3': (0.346,-20.904,-6.382)
C1': (1.744,-22.391,-5.241)
C5': (-0.063,-19.353,-4.352)
O6: (-0.400,-27.991,-4.763)
O4': (1.339,-21.361,-4.349)
C8: (-0.189,-23.735,-4.275)
C2: (2.477,-26.577,-6.288)
C6: (0.395,-27.110,-5.112)
C5: (0.328,-25.713,-4.870)
C4: (1.332,-24.901,-5.353)
P: (-2.156,-19.366,-2.790)
C4': (0.899,-20.225,-5.138)
C2': (1.481,-21.880,-6.659)
O2': (2.630,-21.265,-7.213)
N1: (1.527,-27.465,-5.842)
N2: (3.499,-27.104,-6.976)
N3: (2.431,-25.267,-6.066)
N7: (-0.625,-24.961,-4.192)
N9: (0.998,-23.620,-4.962)
O5': (-1.128,-20.101,-3.776)
O3': (0.145,-20.005,-7.460)
Image (generated by PyMOL):