Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12382:12400
Extra
PDB:
ATOM 1 O3' U A2381 28.196 -44.505 55.331 1.00 41.35 O
ATOM 2 P C A2382 28.720 -44.509 53.825 1.00 39.16 P
ATOM 3 OP1 C A2382 29.715 -45.598 53.723 1.00 39.36 O
ATOM 4 OP2 C A2382 29.130 -43.139 53.507 1.00 38.86 O
ATOM 5 O5' C A2382 27.438 -44.911 52.998 1.00 39.41 O
ATOM 6 C5' C A2382 26.985 -46.251 53.012 1.00 39.75 C
ATOM 7 C4' C A2382 25.636 -46.403 52.353 1.00 39.95 C
ATOM 8 O4' C A2382 24.615 -45.665 53.067 1.00 39.78 O
ATOM 9 C3' C A2382 25.515 -45.905 50.938 1.00 40.00 C
ATOM 10 O3' C A2382 26.077 -46.806 50.030 1.00 40.28 O
ATOM 11 C2' C A2382 24.016 -45.782 50.794 1.00 40.11 C
ATOM 12 O2' C A2382 23.443 -47.050 50.656 1.00 40.47 O
ATOM 13 C1' C A2382 23.625 -45.249 52.160 1.00 39.86 C
ATOM 14 N1 C A2382 23.586 -43.809 52.177 1.00 39.54 N
ATOM 15 C2 C A2382 22.589 -43.222 51.445 1.00 39.58 C
ATOM 16 O2 C A2382 21.811 -43.987 50.883 1.00 39.89 O
ATOM 17 N3 C A2382 22.483 -41.882 51.383 1.00 39.32 N
ATOM 18 C4 C A2382 23.327 -41.136 52.077 1.00 39.01 C
ATOM 19 N4 C A2382 23.168 -39.820 52.016 1.00 38.78 N
ATOM 20 C5 C A2382 24.385 -41.718 52.860 1.00 38.96 C
ATOM 21 C6 C A2382 24.485 -43.067 52.891 1.00 39.23 C
ATOM 22 P U A2383 26.781 -46.283 48.728 1.00 40.30 P
ATOM 23 OP1 U A2383 27.705 -47.351 48.266 1.00 40.55 O
ATOM 24 OP2 U A2383 27.301 -44.966 49.035 1.00 39.92 O
ATOM 25 O5' U A2383 25.579 -46.151 47.723 1.00 40.49 O
TER
ATOM 1 O3' A B2399 13.250 -35.523 44.224 1.00 44.36 O
ATOM 2 P G B2400 12.660 -35.860 45.664 1.00 42.35 P
ATOM 3 OP1 G B2400 11.190 -36.054 45.507 1.00 42.62 O
ATOM 4 OP2 G B2400 13.130 -34.824 46.587 1.00 41.98 O
ATOM 5 O5' G B2400 13.362 -37.248 45.997 1.00 42.44 O
ATOM 6 C5' G B2400 13.370 -37.820 47.309 1.00 42.34 C
ATOM 7 C4' G B2400 13.931 -39.230 47.279 1.00 42.53 C
ATOM 8 O4' G B2400 15.226 -39.237 46.609 1.00 42.46 O
ATOM 9 C3' G B2400 14.225 -39.886 48.618 1.00 42.42 C
ATOM 10 O3' G B2400 13.080 -40.413 49.238 1.00 42.59 O
ATOM 11 C2' G B2400 15.186 -40.963 48.208 1.00 42.57 C
ATOM 12 O2' G B2400 14.488 -41.974 47.517 1.00 42.96 O
ATOM 13 C1' G B2400 16.060 -40.205 47.213 1.00 42.45 C
ATOM 14 N9 G B2400 17.160 -39.521 47.920 1.00 42.09 N
ATOM 15 C8 G B2400 17.317 -38.198 48.201 1.00 41.78 C
ATOM 16 N7 G B2400 18.379 -37.950 48.930 1.00 41.52 N
ATOM 17 C5 G B2400 18.932 -39.191 49.159 1.00 41.65 C
ATOM 18 C6 G B2400 20.078 -39.556 49.865 1.00 41.51 C
ATOM 19 O6 G B2400 20.861 -38.836 50.479 1.00 41.22 O
ATOM 20 N1 G B2400 20.261 -40.914 49.865 1.00 41.76 N
ATOM 21 C2 G B2400 19.502 -41.842 49.251 1.00 42.10 C
ATOM 22 N2 G B2400 19.884 -43.124 49.379 1.00 42.31 N
ATOM 23 N3 G B2400 18.433 -41.508 48.559 1.00 42.24 N
ATOM 24 C4 G B2400 18.189 -40.175 48.569 1.00 42.00 C
ATOM 25 P A B2401 12.843 -40.250 50.832 1.00 42.78 P
ATOM 26 OP1 A B2401 11.377 -40.490 51.064 1.00 43.00 O
ATOM 27 OP2 A B2401 13.450 -38.921 51.247 1.00 42.40 O
ATOM 28 O5' A B2401 13.686 -41.455 51.439 1.00 42.83 O
TER
ATOM 2 P C A2382 28.720 -44.509 53.825 1.00 39.16 P
ATOM 3 OP1 C A2382 29.715 -45.598 53.723 1.00 39.36 O
ATOM 4 OP2 C A2382 29.130 -43.139 53.507 1.00 38.86 O
ATOM 5 O5' C A2382 27.438 -44.911 52.998 1.00 39.41 O
ATOM 6 C5' C A2382 26.985 -46.251 53.012 1.00 39.75 C
ATOM 7 C4' C A2382 25.636 -46.403 52.353 1.00 39.95 C
ATOM 8 O4' C A2382 24.615 -45.665 53.067 1.00 39.78 O
ATOM 9 C3' C A2382 25.515 -45.905 50.938 1.00 40.00 C
ATOM 10 O3' C A2382 26.077 -46.806 50.030 1.00 40.28 O
ATOM 11 C2' C A2382 24.016 -45.782 50.794 1.00 40.11 C
ATOM 12 O2' C A2382 23.443 -47.050 50.656 1.00 40.47 O
ATOM 13 C1' C A2382 23.625 -45.249 52.160 1.00 39.86 C
ATOM 14 N1 C A2382 23.586 -43.809 52.177 1.00 39.54 N
ATOM 15 C2 C A2382 22.589 -43.222 51.445 1.00 39.58 C
ATOM 16 O2 C A2382 21.811 -43.987 50.883 1.00 39.89 O
ATOM 17 N3 C A2382 22.483 -41.882 51.383 1.00 39.32 N
ATOM 18 C4 C A2382 23.327 -41.136 52.077 1.00 39.01 C
ATOM 19 N4 C A2382 23.168 -39.820 52.016 1.00 38.78 N
ATOM 20 C5 C A2382 24.385 -41.718 52.860 1.00 38.96 C
ATOM 21 C6 C A2382 24.485 -43.067 52.891 1.00 39.23 C
ATOM 22 P U A2383 26.781 -46.283 48.728 1.00 40.30 P
ATOM 23 OP1 U A2383 27.705 -47.351 48.266 1.00 40.55 O
ATOM 24 OP2 U A2383 27.301 -44.966 49.035 1.00 39.92 O
ATOM 25 O5' U A2383 25.579 -46.151 47.723 1.00 40.49 O
TER
ATOM 1 O3' A B2399 13.250 -35.523 44.224 1.00 44.36 O
ATOM 2 P G B2400 12.660 -35.860 45.664 1.00 42.35 P
ATOM 3 OP1 G B2400 11.190 -36.054 45.507 1.00 42.62 O
ATOM 4 OP2 G B2400 13.130 -34.824 46.587 1.00 41.98 O
ATOM 5 O5' G B2400 13.362 -37.248 45.997 1.00 42.44 O
ATOM 6 C5' G B2400 13.370 -37.820 47.309 1.00 42.34 C
ATOM 7 C4' G B2400 13.931 -39.230 47.279 1.00 42.53 C
ATOM 8 O4' G B2400 15.226 -39.237 46.609 1.00 42.46 O
ATOM 9 C3' G B2400 14.225 -39.886 48.618 1.00 42.42 C
ATOM 10 O3' G B2400 13.080 -40.413 49.238 1.00 42.59 O
ATOM 11 C2' G B2400 15.186 -40.963 48.208 1.00 42.57 C
ATOM 12 O2' G B2400 14.488 -41.974 47.517 1.00 42.96 O
ATOM 13 C1' G B2400 16.060 -40.205 47.213 1.00 42.45 C
ATOM 14 N9 G B2400 17.160 -39.521 47.920 1.00 42.09 N
ATOM 15 C8 G B2400 17.317 -38.198 48.201 1.00 41.78 C
ATOM 16 N7 G B2400 18.379 -37.950 48.930 1.00 41.52 N
ATOM 17 C5 G B2400 18.932 -39.191 49.159 1.00 41.65 C
ATOM 18 C6 G B2400 20.078 -39.556 49.865 1.00 41.51 C
ATOM 19 O6 G B2400 20.861 -38.836 50.479 1.00 41.22 O
ATOM 20 N1 G B2400 20.261 -40.914 49.865 1.00 41.76 N
ATOM 21 C2 G B2400 19.502 -41.842 49.251 1.00 42.10 C
ATOM 22 N2 G B2400 19.884 -43.124 49.379 1.00 42.31 N
ATOM 23 N3 G B2400 18.433 -41.508 48.559 1.00 42.24 N
ATOM 24 C4 G B2400 18.189 -40.175 48.569 1.00 42.00 C
ATOM 25 P A B2401 12.843 -40.250 50.832 1.00 42.78 P
ATOM 26 OP1 A B2401 11.377 -40.490 51.064 1.00 43.00 O
ATOM 27 OP2 A B2401 13.450 -38.921 51.247 1.00 42.40 O
ATOM 28 O5' A B2401 13.686 -41.455 51.439 1.00 42.83 O
TER
Atoms:
C2: (22.589,-43.222,51.445)
OP1: (29.715,-45.598,53.723)
OP2: (29.130,-43.139,53.507)
C4: (23.327,-41.136,52.077)
O5': (27.438,-44.911,52.998)
C3': (25.515,-45.905,50.938)
C1': (23.625,-45.249,52.160)
O4': (24.615,-45.665,53.067)
C5': (26.985,-46.251,53.012)
P: (28.720,-44.509,53.825)
O2: (21.811,-43.987,50.883)
C4': (25.636,-46.403,52.353)
C2': (24.016,-45.782,50.794)
O2': (23.443,-47.050,50.656)
N1: (23.586,-43.809,52.177)
N3: (22.483,-41.882,51.383)
N4: (23.168,-39.820,52.016)
C6: (24.485,-43.067,52.891)
C5: (24.385,-41.718,52.860)
O3': (26.077,-46.806,50.030)
OP1: (29.715,-45.598,53.723)
OP2: (29.130,-43.139,53.507)
C4: (23.327,-41.136,52.077)
O5': (27.438,-44.911,52.998)
C3': (25.515,-45.905,50.938)
C1': (23.625,-45.249,52.160)
O4': (24.615,-45.665,53.067)
C5': (26.985,-46.251,53.012)
P: (28.720,-44.509,53.825)
O2: (21.811,-43.987,50.883)
C4': (25.636,-46.403,52.353)
C2': (24.016,-45.782,50.794)
O2': (23.443,-47.050,50.656)
N1: (23.586,-43.809,52.177)
N3: (22.483,-41.882,51.383)
N4: (23.168,-39.820,52.016)
C6: (24.485,-43.067,52.891)
C5: (24.385,-41.718,52.860)
O3': (26.077,-46.806,50.030)
OP1: (11.190,-36.054,45.507)
OP2: (13.130,-34.824,46.587)
C3': (14.225,-39.886,48.618)
C1': (16.060,-40.205,47.213)
C5': (13.370,-37.820,47.309)
O6: (20.861,-38.836,50.479)
O4': (15.226,-39.237,46.609)
C8: (17.317,-38.198,48.201)
C2: (19.502,-41.842,49.251)
C6: (20.078,-39.556,49.865)
C5: (18.932,-39.191,49.159)
C4: (18.189,-40.175,48.569)
P: (12.660,-35.860,45.664)
C4': (13.931,-39.230,47.279)
C2': (15.186,-40.963,48.208)
O2': (14.488,-41.974,47.517)
N1: (20.261,-40.914,49.865)
N2: (19.884,-43.124,49.379)
N3: (18.433,-41.508,48.559)
N7: (18.379,-37.950,48.930)
N9: (17.160,-39.521,47.920)
O5': (13.362,-37.248,45.997)
O3': (13.080,-40.413,49.238)
OP2: (13.130,-34.824,46.587)
C3': (14.225,-39.886,48.618)
C1': (16.060,-40.205,47.213)
C5': (13.370,-37.820,47.309)
O6: (20.861,-38.836,50.479)
O4': (15.226,-39.237,46.609)
C8: (17.317,-38.198,48.201)
C2: (19.502,-41.842,49.251)
C6: (20.078,-39.556,49.865)
C5: (18.932,-39.191,49.159)
C4: (18.189,-40.175,48.569)
P: (12.660,-35.860,45.664)
C4': (13.931,-39.230,47.279)
C2': (15.186,-40.963,48.208)
O2': (14.488,-41.974,47.517)
N1: (20.261,-40.914,49.865)
N2: (19.884,-43.124,49.379)
N3: (18.433,-41.508,48.559)
N7: (18.379,-37.950,48.930)
N9: (17.160,-39.521,47.920)
O5': (13.362,-37.248,45.997)
O3': (13.080,-40.413,49.238)
Image (generated by PyMOL):