Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11935:12088
Extra
PDB:
ATOM 1 O3' U A1934 -11.102 13.719 77.259 1.00 45.48 O
ATOM 2 P C A1935 -10.609 12.868 78.549 1.00 45.96 P
ATOM 3 OP1 C A1935 -11.303 11.560 78.522 1.00 45.92 O
ATOM 4 OP2 C A1935 -10.747 13.733 79.736 1.00 46.20 O
ATOM 5 O5' C A1935 -9.079 12.659 78.272 1.00 45.55 O
ATOM 6 C5' C A1935 -8.614 11.672 77.385 1.00 45.24 C
ATOM 7 C4' C A1935 -7.173 11.471 77.619 1.00 44.90 C
ATOM 8 O4' C A1935 -6.487 12.749 77.488 1.00 44.93 O
ATOM 9 C3' C A1935 -6.821 11.047 79.024 1.00 44.83 C
ATOM 10 O3' C A1935 -7.044 9.683 79.259 1.00 44.70 O
ATOM 11 C2' C A1935 -5.373 11.434 79.099 1.00 44.57 C
ATOM 12 O2' C A1935 -4.620 10.540 78.319 1.00 44.23 O
ATOM 13 C1' C A1935 -5.397 12.776 78.385 1.00 44.74 C
ATOM 14 N1 C A1935 -5.556 13.912 79.326 1.00 45.01 N
ATOM 15 C2 C A1935 -4.434 14.315 80.061 1.00 44.88 C
ATOM 16 O2 C A1935 -3.388 13.681 79.906 1.00 44.55 O
ATOM 17 N3 C A1935 -4.495 15.366 80.927 1.00 45.13 N
ATOM 18 C4 C A1935 -5.629 16.036 81.044 1.00 45.50 C
ATOM 19 N4 C A1935 -5.678 17.061 81.859 1.00 45.76 N
ATOM 20 C5 C A1935 -6.766 15.670 80.297 1.00 45.64 C
ATOM 21 C6 C A1935 -6.691 14.623 79.448 1.00 45.39 C
ATOM 22 P U A1936 -7.411 9.178 80.732 1.00 42.81 P
ATOM 23 OP1 U A1936 -7.446 7.704 80.688 1.00 42.62 O
ATOM 24 OP2 U A1936 -8.628 9.920 81.184 1.00 43.22 O
ATOM 25 O5' U A1936 -6.173 9.655 81.586 1.00 42.66 O
TER
ATOM 1 O3' A B2087 -7.066 8.772 74.201 1.00 48.35 O
ATOM 2 P A B2088 -5.735 9.344 73.576 1.00 55.41 P
ATOM 3 OP1 A B2088 -5.561 10.700 74.137 1.00 55.57 O
ATOM 4 OP2 A B2088 -5.815 9.179 72.105 1.00 55.38 O
ATOM 5 O5' A B2088 -4.654 8.363 74.164 1.00 55.06 O
ATOM 6 C5' A B2088 -3.836 8.759 75.258 1.00 54.97 C
ATOM 7 C4' A B2088 -2.625 7.890 75.361 1.00 54.61 C
ATOM 8 O4' A B2088 -1.818 8.338 76.482 1.00 54.54 O
ATOM 9 C3' A B2088 -2.945 6.412 75.612 1.00 54.51 C
ATOM 10 O3' A B2088 -2.338 5.570 74.649 1.00 54.26 O
ATOM 11 C2' A B2088 -2.393 6.129 76.994 1.00 54.42 C
ATOM 12 O2' A B2088 -1.894 4.806 77.206 1.00 54.18 O
ATOM 13 C1' A B2088 -1.317 7.206 77.138 1.00 54.33 C
ATOM 14 N9 A B2088 -1.050 7.503 78.519 1.00 54.39 N
ATOM 15 C8 A B2088 -1.952 7.524 79.543 1.00 54.63 C
ATOM 16 N7 A B2088 -1.391 7.610 80.700 1.00 54.60 N
ATOM 17 C5 A B2088 -0.038 7.568 80.387 1.00 54.32 C
ATOM 18 C6 A B2088 1.089 7.616 81.174 1.00 54.17 C
ATOM 19 N6 A B2088 1.016 7.726 82.479 1.00 54.30 N
ATOM 20 N1 A B2088 2.272 7.552 80.546 1.00 53.90 N
ATOM 21 C2 A B2088 2.325 7.458 79.210 1.00 53.79 C
ATOM 22 N3 A B2088 1.345 7.419 78.344 1.00 53.91 N
ATOM 23 C4 A B2088 0.190 7.471 79.031 1.00 54.17 C
ATOM 24 P U B2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 25 OP1 U B2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 26 OP2 U B2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 27 O5' U B2089 -2.577 3.224 73.688 1.00 50.69 O
TER
ATOM 2 P C A1935 -10.609 12.868 78.549 1.00 45.96 P
ATOM 3 OP1 C A1935 -11.303 11.560 78.522 1.00 45.92 O
ATOM 4 OP2 C A1935 -10.747 13.733 79.736 1.00 46.20 O
ATOM 5 O5' C A1935 -9.079 12.659 78.272 1.00 45.55 O
ATOM 6 C5' C A1935 -8.614 11.672 77.385 1.00 45.24 C
ATOM 7 C4' C A1935 -7.173 11.471 77.619 1.00 44.90 C
ATOM 8 O4' C A1935 -6.487 12.749 77.488 1.00 44.93 O
ATOM 9 C3' C A1935 -6.821 11.047 79.024 1.00 44.83 C
ATOM 10 O3' C A1935 -7.044 9.683 79.259 1.00 44.70 O
ATOM 11 C2' C A1935 -5.373 11.434 79.099 1.00 44.57 C
ATOM 12 O2' C A1935 -4.620 10.540 78.319 1.00 44.23 O
ATOM 13 C1' C A1935 -5.397 12.776 78.385 1.00 44.74 C
ATOM 14 N1 C A1935 -5.556 13.912 79.326 1.00 45.01 N
ATOM 15 C2 C A1935 -4.434 14.315 80.061 1.00 44.88 C
ATOM 16 O2 C A1935 -3.388 13.681 79.906 1.00 44.55 O
ATOM 17 N3 C A1935 -4.495 15.366 80.927 1.00 45.13 N
ATOM 18 C4 C A1935 -5.629 16.036 81.044 1.00 45.50 C
ATOM 19 N4 C A1935 -5.678 17.061 81.859 1.00 45.76 N
ATOM 20 C5 C A1935 -6.766 15.670 80.297 1.00 45.64 C
ATOM 21 C6 C A1935 -6.691 14.623 79.448 1.00 45.39 C
ATOM 22 P U A1936 -7.411 9.178 80.732 1.00 42.81 P
ATOM 23 OP1 U A1936 -7.446 7.704 80.688 1.00 42.62 O
ATOM 24 OP2 U A1936 -8.628 9.920 81.184 1.00 43.22 O
ATOM 25 O5' U A1936 -6.173 9.655 81.586 1.00 42.66 O
TER
ATOM 1 O3' A B2087 -7.066 8.772 74.201 1.00 48.35 O
ATOM 2 P A B2088 -5.735 9.344 73.576 1.00 55.41 P
ATOM 3 OP1 A B2088 -5.561 10.700 74.137 1.00 55.57 O
ATOM 4 OP2 A B2088 -5.815 9.179 72.105 1.00 55.38 O
ATOM 5 O5' A B2088 -4.654 8.363 74.164 1.00 55.06 O
ATOM 6 C5' A B2088 -3.836 8.759 75.258 1.00 54.97 C
ATOM 7 C4' A B2088 -2.625 7.890 75.361 1.00 54.61 C
ATOM 8 O4' A B2088 -1.818 8.338 76.482 1.00 54.54 O
ATOM 9 C3' A B2088 -2.945 6.412 75.612 1.00 54.51 C
ATOM 10 O3' A B2088 -2.338 5.570 74.649 1.00 54.26 O
ATOM 11 C2' A B2088 -2.393 6.129 76.994 1.00 54.42 C
ATOM 12 O2' A B2088 -1.894 4.806 77.206 1.00 54.18 O
ATOM 13 C1' A B2088 -1.317 7.206 77.138 1.00 54.33 C
ATOM 14 N9 A B2088 -1.050 7.503 78.519 1.00 54.39 N
ATOM 15 C8 A B2088 -1.952 7.524 79.543 1.00 54.63 C
ATOM 16 N7 A B2088 -1.391 7.610 80.700 1.00 54.60 N
ATOM 17 C5 A B2088 -0.038 7.568 80.387 1.00 54.32 C
ATOM 18 C6 A B2088 1.089 7.616 81.174 1.00 54.17 C
ATOM 19 N6 A B2088 1.016 7.726 82.479 1.00 54.30 N
ATOM 20 N1 A B2088 2.272 7.552 80.546 1.00 53.90 N
ATOM 21 C2 A B2088 2.325 7.458 79.210 1.00 53.79 C
ATOM 22 N3 A B2088 1.345 7.419 78.344 1.00 53.91 N
ATOM 23 C4 A B2088 0.190 7.471 79.031 1.00 54.17 C
ATOM 24 P U B2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 25 OP1 U B2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 26 OP2 U B2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 27 O5' U B2089 -2.577 3.224 73.688 1.00 50.69 O
TER
Atoms:
C2: (-4.434,14.315,80.061)
OP1: (-11.303,11.560,78.522)
OP2: (-10.747,13.733,79.736)
C4: (-5.629,16.036,81.044)
O5': (-9.079,12.659,78.272)
C3': (-6.821,11.047,79.024)
C1': (-5.397,12.776,78.385)
O4': (-6.487,12.749,77.488)
C5': (-8.614,11.672,77.385)
P: (-10.609,12.868,78.549)
O2: (-3.388,13.681,79.906)
C4': (-7.173,11.471,77.619)
C2': (-5.373,11.434,79.099)
O2': (-4.620,10.540,78.319)
N1: (-5.556,13.912,79.326)
N3: (-4.495,15.366,80.927)
N4: (-5.678,17.061,81.859)
C6: (-6.691,14.623,79.448)
C5: (-6.766,15.670,80.297)
O3': (-7.044,9.683,79.259)
OP1: (-11.303,11.560,78.522)
OP2: (-10.747,13.733,79.736)
C4: (-5.629,16.036,81.044)
O5': (-9.079,12.659,78.272)
C3': (-6.821,11.047,79.024)
C1': (-5.397,12.776,78.385)
O4': (-6.487,12.749,77.488)
C5': (-8.614,11.672,77.385)
P: (-10.609,12.868,78.549)
O2: (-3.388,13.681,79.906)
C4': (-7.173,11.471,77.619)
C2': (-5.373,11.434,79.099)
O2': (-4.620,10.540,78.319)
N1: (-5.556,13.912,79.326)
N3: (-4.495,15.366,80.927)
N4: (-5.678,17.061,81.859)
C6: (-6.691,14.623,79.448)
C5: (-6.766,15.670,80.297)
O3': (-7.044,9.683,79.259)
OP1: (-5.561,10.700,74.137)
OP2: (-5.815,9.179,72.105)
C3': (-2.945,6.412,75.612)
C1': (-1.317,7.206,77.138)
C5': (-3.836,8.759,75.258)
O4': (-1.818,8.338,76.482)
C8: (-1.952,7.524,79.543)
O2': (-1.894,4.806,77.206)
C6: (1.089,7.616,81.174)
C5: (-0.038,7.568,80.387)
C4: (0.190,7.471,79.031)
P: (-5.735,9.344,73.576)
C4': (-2.625,7.890,75.361)
C2': (-2.393,6.129,76.994)
C2: (2.325,7.458,79.210)
N1: (2.272,7.552,80.546)
N3: (1.345,7.419,78.344)
N6: (1.016,7.726,82.479)
N7: (-1.391,7.610,80.700)
N9: (-1.050,7.503,78.519)
O5': (-4.654,8.363,74.164)
O3': (-2.338,5.570,74.649)
OP2: (-5.815,9.179,72.105)
C3': (-2.945,6.412,75.612)
C1': (-1.317,7.206,77.138)
C5': (-3.836,8.759,75.258)
O4': (-1.818,8.338,76.482)
C8: (-1.952,7.524,79.543)
O2': (-1.894,4.806,77.206)
C6: (1.089,7.616,81.174)
C5: (-0.038,7.568,80.387)
C4: (0.190,7.471,79.031)
P: (-5.735,9.344,73.576)
C4': (-2.625,7.890,75.361)
C2': (-2.393,6.129,76.994)
C2: (2.325,7.458,79.210)
N1: (2.272,7.552,80.546)
N3: (1.345,7.419,78.344)
N6: (1.016,7.726,82.479)
N7: (-1.391,7.610,80.700)
N9: (-1.050,7.503,78.519)
O5': (-4.654,8.363,74.164)
O3': (-2.338,5.570,74.649)
Image (generated by PyMOL):