Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A65:A18
Extra
PDB:
ATOM 1 O3' G A 64 -3.453 8.206 5.148 1.00 24.08 O
ATOM 2 P C A 65 -2.943 6.898 5.926 1.00 24.19 P
ATOM 3 OP1 C A 65 -1.526 6.694 5.552 1.00 23.73 O
ATOM 4 OP2 C A 65 -3.918 5.815 5.651 1.00 19.15 O
ATOM 5 O5' C A 65 -3.039 7.342 7.449 1.00 18.53 O
ATOM 6 C5' C A 65 -2.301 8.455 7.920 1.00 22.17 C
ATOM 7 C4' C A 65 -2.884 9.008 9.194 1.00 23.35 C
ATOM 8 O4' C A 65 -4.225 9.508 8.951 1.00 21.69 O
ATOM 9 C3' C A 65 -3.067 8.018 10.330 1.00 19.13 C
ATOM 10 O3' C A 65 -1.867 7.748 11.026 1.00 21.24 O
ATOM 11 C2' C A 65 -4.123 8.702 11.180 1.00 20.02 C
ATOM 12 O2' C A 65 -3.547 9.766 11.926 1.00 21.60 O
ATOM 13 C1' C A 65 -5.023 9.303 10.100 1.00 20.41 C
ATOM 14 N1 C A 65 -6.139 8.400 9.745 1.00 18.56 N
ATOM 15 C2 C A 65 -7.261 8.367 10.576 1.00 19.85 C
ATOM 16 O2 C A 65 -7.280 9.094 11.579 1.00 18.82 O
ATOM 17 N3 C A 65 -8.292 7.545 10.272 1.00 18.97 N
ATOM 18 C4 C A 65 -8.233 6.780 9.182 1.00 19.83 C
ATOM 19 N4 C A 65 -9.275 5.988 8.917 1.00 17.63 N
ATOM 20 C5 C A 65 -7.099 6.793 8.316 1.00 20.93 C
ATOM 21 C6 C A 65 -6.085 7.609 8.632 1.00 18.48 C
ATOM 22 P G A 66 -1.615 6.297 11.665 1.00 22.90 P
ATOM 23 OP1 G A 66 -0.263 6.317 12.273 1.00 18.42 O
ATOM 24 OP2 G A 66 -1.908 5.298 10.612 1.00 15.60 O
ATOM 25 O5' G A 66 -2.722 6.217 12.805 1.00 20.60 O
TER
ATOM 1 O3' C B 17 -18.122 4.714 16.214 1.00 26.89 O
ATOM 2 P G B 18 -18.182 6.290 15.913 1.00 29.41 P
ATOM 3 OP1 G B 18 -19.255 6.860 16.766 1.00 32.36 O
ATOM 4 OP2 G B 18 -18.281 6.449 14.443 1.00 20.92 O
ATOM 5 O5' G B 18 -16.763 6.799 16.420 1.00 24.06 O
ATOM 6 C5' G B 18 -16.359 6.605 17.767 1.00 21.28 C
ATOM 7 C4' G B 18 -14.923 7.005 17.970 1.00 24.94 C
ATOM 8 O4' G B 18 -14.055 6.087 17.258 1.00 23.82 O
ATOM 9 C3' G B 18 -14.538 8.377 17.435 1.00 25.36 C
ATOM 10 O3' G B 18 -14.871 9.424 18.330 1.00 25.03 O
ATOM 11 C2' G B 18 -13.040 8.236 17.195 1.00 25.75 C
ATOM 12 O2' G B 18 -12.322 8.379 18.413 1.00 27.04 O
ATOM 13 C1' G B 18 -12.937 6.778 16.745 1.00 23.44 C
ATOM 14 N9 G B 18 -12.931 6.637 15.275 1.00 23.30 N
ATOM 15 C8 G B 18 -13.954 6.160 14.491 1.00 23.54 C
ATOM 16 N7 G B 18 -13.655 6.123 13.219 1.00 22.97 N
ATOM 17 C5 G B 18 -12.350 6.591 13.160 1.00 22.65 C
ATOM 18 C6 G B 18 -11.493 6.780 12.046 1.00 22.05 C
ATOM 19 O6 G B 18 -11.723 6.558 10.852 1.00 23.04 O
ATOM 20 N1 G B 18 -10.254 7.279 12.429 1.00 19.57 N
ATOM 21 C2 G B 18 -9.886 7.560 13.719 1.00 20.04 C
ATOM 22 N2 G B 18 -8.645 8.036 13.887 1.00 17.40 N
ATOM 23 N3 G B 18 -10.674 7.391 14.768 1.00 21.26 N
ATOM 24 C4 G B 18 -11.884 6.905 14.420 1.00 22.66 C
ATOM 25 P U B 19 -15.471 10.810 17.780 1.00 25.10 P
ATOM 26 OP1 U B 19 -15.930 11.578 18.959 1.00 34.70 O
ATOM 27 OP2 U B 19 -16.455 10.479 16.717 1.00 22.99 O
ATOM 28 O5' U B 19 -14.198 11.514 17.135 1.00 28.87 O
TER
ATOM 2 P C A 65 -2.943 6.898 5.926 1.00 24.19 P
ATOM 3 OP1 C A 65 -1.526 6.694 5.552 1.00 23.73 O
ATOM 4 OP2 C A 65 -3.918 5.815 5.651 1.00 19.15 O
ATOM 5 O5' C A 65 -3.039 7.342 7.449 1.00 18.53 O
ATOM 6 C5' C A 65 -2.301 8.455 7.920 1.00 22.17 C
ATOM 7 C4' C A 65 -2.884 9.008 9.194 1.00 23.35 C
ATOM 8 O4' C A 65 -4.225 9.508 8.951 1.00 21.69 O
ATOM 9 C3' C A 65 -3.067 8.018 10.330 1.00 19.13 C
ATOM 10 O3' C A 65 -1.867 7.748 11.026 1.00 21.24 O
ATOM 11 C2' C A 65 -4.123 8.702 11.180 1.00 20.02 C
ATOM 12 O2' C A 65 -3.547 9.766 11.926 1.00 21.60 O
ATOM 13 C1' C A 65 -5.023 9.303 10.100 1.00 20.41 C
ATOM 14 N1 C A 65 -6.139 8.400 9.745 1.00 18.56 N
ATOM 15 C2 C A 65 -7.261 8.367 10.576 1.00 19.85 C
ATOM 16 O2 C A 65 -7.280 9.094 11.579 1.00 18.82 O
ATOM 17 N3 C A 65 -8.292 7.545 10.272 1.00 18.97 N
ATOM 18 C4 C A 65 -8.233 6.780 9.182 1.00 19.83 C
ATOM 19 N4 C A 65 -9.275 5.988 8.917 1.00 17.63 N
ATOM 20 C5 C A 65 -7.099 6.793 8.316 1.00 20.93 C
ATOM 21 C6 C A 65 -6.085 7.609 8.632 1.00 18.48 C
ATOM 22 P G A 66 -1.615 6.297 11.665 1.00 22.90 P
ATOM 23 OP1 G A 66 -0.263 6.317 12.273 1.00 18.42 O
ATOM 24 OP2 G A 66 -1.908 5.298 10.612 1.00 15.60 O
ATOM 25 O5' G A 66 -2.722 6.217 12.805 1.00 20.60 O
TER
ATOM 1 O3' C B 17 -18.122 4.714 16.214 1.00 26.89 O
ATOM 2 P G B 18 -18.182 6.290 15.913 1.00 29.41 P
ATOM 3 OP1 G B 18 -19.255 6.860 16.766 1.00 32.36 O
ATOM 4 OP2 G B 18 -18.281 6.449 14.443 1.00 20.92 O
ATOM 5 O5' G B 18 -16.763 6.799 16.420 1.00 24.06 O
ATOM 6 C5' G B 18 -16.359 6.605 17.767 1.00 21.28 C
ATOM 7 C4' G B 18 -14.923 7.005 17.970 1.00 24.94 C
ATOM 8 O4' G B 18 -14.055 6.087 17.258 1.00 23.82 O
ATOM 9 C3' G B 18 -14.538 8.377 17.435 1.00 25.36 C
ATOM 10 O3' G B 18 -14.871 9.424 18.330 1.00 25.03 O
ATOM 11 C2' G B 18 -13.040 8.236 17.195 1.00 25.75 C
ATOM 12 O2' G B 18 -12.322 8.379 18.413 1.00 27.04 O
ATOM 13 C1' G B 18 -12.937 6.778 16.745 1.00 23.44 C
ATOM 14 N9 G B 18 -12.931 6.637 15.275 1.00 23.30 N
ATOM 15 C8 G B 18 -13.954 6.160 14.491 1.00 23.54 C
ATOM 16 N7 G B 18 -13.655 6.123 13.219 1.00 22.97 N
ATOM 17 C5 G B 18 -12.350 6.591 13.160 1.00 22.65 C
ATOM 18 C6 G B 18 -11.493 6.780 12.046 1.00 22.05 C
ATOM 19 O6 G B 18 -11.723 6.558 10.852 1.00 23.04 O
ATOM 20 N1 G B 18 -10.254 7.279 12.429 1.00 19.57 N
ATOM 21 C2 G B 18 -9.886 7.560 13.719 1.00 20.04 C
ATOM 22 N2 G B 18 -8.645 8.036 13.887 1.00 17.40 N
ATOM 23 N3 G B 18 -10.674 7.391 14.768 1.00 21.26 N
ATOM 24 C4 G B 18 -11.884 6.905 14.420 1.00 22.66 C
ATOM 25 P U B 19 -15.471 10.810 17.780 1.00 25.10 P
ATOM 26 OP1 U B 19 -15.930 11.578 18.959 1.00 34.70 O
ATOM 27 OP2 U B 19 -16.455 10.479 16.717 1.00 22.99 O
ATOM 28 O5' U B 19 -14.198 11.514 17.135 1.00 28.87 O
TER
Atoms:
C2: (-7.261,8.367,10.576)
OP1: (-1.526,6.694,5.552)
OP2: (-3.918,5.815,5.651)
C4: (-8.233,6.780,9.182)
O5': (-3.039,7.342,7.449)
C3': (-3.067,8.018,10.330)
C1': (-5.023,9.303,10.100)
O4': (-4.225,9.508,8.951)
C5': (-2.301,8.455,7.920)
P: (-2.943,6.898,5.926)
O2: (-7.280,9.094,11.579)
C4': (-2.884,9.008,9.194)
C2': (-4.123,8.702,11.180)
O2': (-3.547,9.766,11.926)
N1: (-6.139,8.400,9.745)
N3: (-8.292,7.545,10.272)
N4: (-9.275,5.988,8.917)
C6: (-6.085,7.609,8.632)
C5: (-7.099,6.793,8.316)
O3': (-1.867,7.748,11.026)
OP1: (-1.526,6.694,5.552)
OP2: (-3.918,5.815,5.651)
C4: (-8.233,6.780,9.182)
O5': (-3.039,7.342,7.449)
C3': (-3.067,8.018,10.330)
C1': (-5.023,9.303,10.100)
O4': (-4.225,9.508,8.951)
C5': (-2.301,8.455,7.920)
P: (-2.943,6.898,5.926)
O2: (-7.280,9.094,11.579)
C4': (-2.884,9.008,9.194)
C2': (-4.123,8.702,11.180)
O2': (-3.547,9.766,11.926)
N1: (-6.139,8.400,9.745)
N3: (-8.292,7.545,10.272)
N4: (-9.275,5.988,8.917)
C6: (-6.085,7.609,8.632)
C5: (-7.099,6.793,8.316)
O3': (-1.867,7.748,11.026)
OP1: (-19.255,6.860,16.766)
OP2: (-18.281,6.449,14.443)
C3': (-14.538,8.377,17.435)
C1': (-12.937,6.778,16.745)
C5': (-16.359,6.605,17.767)
O6: (-11.723,6.558,10.852)
O4': (-14.055,6.087,17.258)
C8: (-13.954,6.160,14.491)
C2: (-9.886,7.560,13.719)
C6: (-11.493,6.780,12.046)
C5: (-12.350,6.591,13.160)
C4: (-11.884,6.905,14.420)
P: (-18.182,6.290,15.913)
C4': (-14.923,7.005,17.970)
C2': (-13.040,8.236,17.195)
O2': (-12.322,8.379,18.413)
N1: (-10.254,7.279,12.429)
N2: (-8.645,8.036,13.887)
N3: (-10.674,7.391,14.768)
N7: (-13.655,6.123,13.219)
N9: (-12.931,6.637,15.275)
O5': (-16.763,6.799,16.420)
O3': (-14.871,9.424,18.330)
OP2: (-18.281,6.449,14.443)
C3': (-14.538,8.377,17.435)
C1': (-12.937,6.778,16.745)
C5': (-16.359,6.605,17.767)
O6: (-11.723,6.558,10.852)
O4': (-14.055,6.087,17.258)
C8: (-13.954,6.160,14.491)
C2: (-9.886,7.560,13.719)
C6: (-11.493,6.780,12.046)
C5: (-12.350,6.591,13.160)
C4: (-11.884,6.905,14.420)
P: (-18.182,6.290,15.913)
C4': (-14.923,7.005,17.970)
C2': (-13.040,8.236,17.195)
O2': (-12.322,8.379,18.413)
N1: (-10.254,7.279,12.429)
N2: (-8.645,8.036,13.887)
N3: (-10.674,7.391,14.768)
N7: (-13.655,6.123,13.219)
N9: (-12.931,6.637,15.275)
O5': (-16.763,6.799,16.420)
O3': (-14.871,9.424,18.330)
Image (generated by PyMOL):