Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:E8:E9
Extra
PDB:
ATOM 1 O3' G A 7 -24.662 -4.065 14.450 1.00 32.48 O
ATOM 2 P U A 8 -23.350 -4.996 14.611 1.00 34.41 P
ATOM 3 OP1 U A 8 -22.232 -4.100 15.013 1.00 33.94 O
ATOM 4 OP2 U A 8 -23.204 -5.834 13.389 1.00 34.66 O
ATOM 5 O5' U A 8 -23.692 -5.951 15.844 1.00 26.57 O
ATOM 6 C5' U A 8 -23.620 -5.452 17.169 1.00 24.15 C
ATOM 7 C4' U A 8 -23.933 -6.535 18.167 1.00 23.49 C
ATOM 8 O4' U A 8 -25.280 -7.036 17.965 1.00 24.20 O
ATOM 9 C3' U A 8 -23.071 -7.779 18.089 1.00 22.76 C
ATOM 10 O3' U A 8 -21.811 -7.572 18.701 1.00 21.75 O
ATOM 11 C2' U A 8 -23.935 -8.805 18.816 1.00 22.80 C
ATOM 12 O2' U A 8 -23.877 -8.720 20.231 1.00 22.30 O
ATOM 13 C1' U A 8 -25.332 -8.412 18.320 1.00 21.86 C
ATOM 14 N1 U A 8 -25.721 -9.178 17.128 1.00 20.39 N
ATOM 15 C2 U A 8 -26.346 -10.390 17.327 1.00 21.60 C
ATOM 16 O2 U A 8 -26.631 -10.809 18.443 1.00 24.09 O
ATOM 17 N3 U A 8 -26.634 -11.090 16.178 1.00 20.20 N
ATOM 18 C4 U A 8 -26.375 -10.694 14.881 1.00 21.94 C
ATOM 19 O4 U A 8 -26.678 -11.435 13.948 1.00 24.67 O
ATOM 20 C5 U A 8 -25.753 -9.415 14.761 1.00 21.13 C
ATOM 21 C6 U A 8 -25.455 -8.716 15.862 1.00 20.45 C
ATOM 22 P G A 9 -20.523 -8.353 18.149 1.00 20.08 P
ATOM 23 OP1 G A 9 -19.406 -7.375 18.036 1.00 21.88 O
ATOM 24 OP2 G A 9 -20.926 -9.151 16.954 1.00 17.81 O
ATOM 25 O5' G A 9 -20.156 -9.345 19.340 1.00 17.03 O
TER
ATOM 1 O3' U B 8 -21.811 -7.572 18.701 1.00 21.75 O
ATOM 2 P G B 9 -20.523 -8.353 18.149 1.00 20.08 P
ATOM 3 OP1 G B 9 -19.406 -7.375 18.036 1.00 21.88 O
ATOM 4 OP2 G B 9 -20.926 -9.151 16.954 1.00 17.81 O
ATOM 5 O5' G B 9 -20.156 -9.345 19.340 1.00 17.03 O
ATOM 6 C5' G B 9 -21.010 -10.422 19.676 1.00 14.87 C
ATOM 7 C4' G B 9 -20.298 -11.384 20.586 1.00 15.10 C
ATOM 8 O4' G B 9 -21.051 -12.616 20.587 1.00 17.04 O
ATOM 9 C3' G B 9 -18.901 -11.772 20.131 1.00 15.37 C
ATOM 10 O3' G B 9 -17.952 -10.935 20.744 1.00 15.10 O
ATOM 11 C2' G B 9 -18.751 -13.185 20.657 1.00 16.76 C
ATOM 12 O2' G B 9 -18.352 -13.203 22.014 1.00 16.22 O
ATOM 13 C1' G B 9 -20.175 -13.721 20.486 1.00 18.25 C
ATOM 14 N9 G B 9 -20.439 -14.382 19.204 1.00 20.00 N
ATOM 15 C8 G B 9 -20.165 -13.905 17.944 1.00 19.18 C
ATOM 16 N7 G B 9 -20.508 -14.735 16.997 1.00 20.49 N
ATOM 17 C5 G B 9 -21.045 -15.822 17.670 1.00 18.63 C
ATOM 18 C6 G B 9 -21.579 -17.036 17.174 1.00 19.00 C
ATOM 19 O6 G B 9 -21.677 -17.417 15.994 1.00 17.33 O
ATOM 20 N1 G B 9 -22.020 -17.851 18.210 1.00 19.14 N
ATOM 21 C2 G B 9 -21.948 -17.539 19.548 1.00 18.35 C
ATOM 22 N2 G B 9 -22.435 -18.440 20.414 1.00 20.97 N
ATOM 23 N3 G B 9 -21.441 -16.426 20.012 1.00 16.67 N
ATOM 24 C4 G B 9 -21.015 -15.618 19.030 1.00 17.39 C
ATOM 25 P C B 10 -16.659 -10.480 19.931 1.00 18.60 P
ATOM 26 OP1 C B 10 -15.706 -9.870 20.899 1.00 22.53 O
ATOM 27 OP2 C B 10 -17.150 -9.688 18.767 1.00 16.53 O
ATOM 28 O5' C B 10 -15.990 -11.836 19.437 1.00 16.87 O
TER
ATOM 2 P U A 8 -23.350 -4.996 14.611 1.00 34.41 P
ATOM 3 OP1 U A 8 -22.232 -4.100 15.013 1.00 33.94 O
ATOM 4 OP2 U A 8 -23.204 -5.834 13.389 1.00 34.66 O
ATOM 5 O5' U A 8 -23.692 -5.951 15.844 1.00 26.57 O
ATOM 6 C5' U A 8 -23.620 -5.452 17.169 1.00 24.15 C
ATOM 7 C4' U A 8 -23.933 -6.535 18.167 1.00 23.49 C
ATOM 8 O4' U A 8 -25.280 -7.036 17.965 1.00 24.20 O
ATOM 9 C3' U A 8 -23.071 -7.779 18.089 1.00 22.76 C
ATOM 10 O3' U A 8 -21.811 -7.572 18.701 1.00 21.75 O
ATOM 11 C2' U A 8 -23.935 -8.805 18.816 1.00 22.80 C
ATOM 12 O2' U A 8 -23.877 -8.720 20.231 1.00 22.30 O
ATOM 13 C1' U A 8 -25.332 -8.412 18.320 1.00 21.86 C
ATOM 14 N1 U A 8 -25.721 -9.178 17.128 1.00 20.39 N
ATOM 15 C2 U A 8 -26.346 -10.390 17.327 1.00 21.60 C
ATOM 16 O2 U A 8 -26.631 -10.809 18.443 1.00 24.09 O
ATOM 17 N3 U A 8 -26.634 -11.090 16.178 1.00 20.20 N
ATOM 18 C4 U A 8 -26.375 -10.694 14.881 1.00 21.94 C
ATOM 19 O4 U A 8 -26.678 -11.435 13.948 1.00 24.67 O
ATOM 20 C5 U A 8 -25.753 -9.415 14.761 1.00 21.13 C
ATOM 21 C6 U A 8 -25.455 -8.716 15.862 1.00 20.45 C
ATOM 22 P G A 9 -20.523 -8.353 18.149 1.00 20.08 P
ATOM 23 OP1 G A 9 -19.406 -7.375 18.036 1.00 21.88 O
ATOM 24 OP2 G A 9 -20.926 -9.151 16.954 1.00 17.81 O
ATOM 25 O5' G A 9 -20.156 -9.345 19.340 1.00 17.03 O
TER
ATOM 1 O3' U B 8 -21.811 -7.572 18.701 1.00 21.75 O
ATOM 2 P G B 9 -20.523 -8.353 18.149 1.00 20.08 P
ATOM 3 OP1 G B 9 -19.406 -7.375 18.036 1.00 21.88 O
ATOM 4 OP2 G B 9 -20.926 -9.151 16.954 1.00 17.81 O
ATOM 5 O5' G B 9 -20.156 -9.345 19.340 1.00 17.03 O
ATOM 6 C5' G B 9 -21.010 -10.422 19.676 1.00 14.87 C
ATOM 7 C4' G B 9 -20.298 -11.384 20.586 1.00 15.10 C
ATOM 8 O4' G B 9 -21.051 -12.616 20.587 1.00 17.04 O
ATOM 9 C3' G B 9 -18.901 -11.772 20.131 1.00 15.37 C
ATOM 10 O3' G B 9 -17.952 -10.935 20.744 1.00 15.10 O
ATOM 11 C2' G B 9 -18.751 -13.185 20.657 1.00 16.76 C
ATOM 12 O2' G B 9 -18.352 -13.203 22.014 1.00 16.22 O
ATOM 13 C1' G B 9 -20.175 -13.721 20.486 1.00 18.25 C
ATOM 14 N9 G B 9 -20.439 -14.382 19.204 1.00 20.00 N
ATOM 15 C8 G B 9 -20.165 -13.905 17.944 1.00 19.18 C
ATOM 16 N7 G B 9 -20.508 -14.735 16.997 1.00 20.49 N
ATOM 17 C5 G B 9 -21.045 -15.822 17.670 1.00 18.63 C
ATOM 18 C6 G B 9 -21.579 -17.036 17.174 1.00 19.00 C
ATOM 19 O6 G B 9 -21.677 -17.417 15.994 1.00 17.33 O
ATOM 20 N1 G B 9 -22.020 -17.851 18.210 1.00 19.14 N
ATOM 21 C2 G B 9 -21.948 -17.539 19.548 1.00 18.35 C
ATOM 22 N2 G B 9 -22.435 -18.440 20.414 1.00 20.97 N
ATOM 23 N3 G B 9 -21.441 -16.426 20.012 1.00 16.67 N
ATOM 24 C4 G B 9 -21.015 -15.618 19.030 1.00 17.39 C
ATOM 25 P C B 10 -16.659 -10.480 19.931 1.00 18.60 P
ATOM 26 OP1 C B 10 -15.706 -9.870 20.899 1.00 22.53 O
ATOM 27 OP2 C B 10 -17.150 -9.688 18.767 1.00 16.53 O
ATOM 28 O5' C B 10 -15.990 -11.836 19.437 1.00 16.87 O
TER
Atoms:
C4: (-26.375,-10.694,14.881)
N3: (-26.634,-11.090,16.178)
OP1: (-22.232,-4.100,15.013)
OP2: (-23.204,-5.834,13.389)
C2: (-26.346,-10.390,17.327)
C1': (-25.332,-8.412,18.320)
C3': (-23.071,-7.779,18.089)
O5': (-23.692,-5.951,15.844)
O4': (-25.280,-7.036,17.965)
C5': (-23.620,-5.452,17.169)
P: (-23.350,-4.996,14.611)
C4': (-23.933,-6.535,18.167)
C2': (-23.935,-8.805,18.816)
O2': (-23.877,-8.720,20.231)
N1: (-25.721,-9.178,17.128)
O4: (-26.678,-11.435,13.948)
O2: (-26.631,-10.809,18.443)
C6: (-25.455,-8.716,15.862)
C5: (-25.753,-9.415,14.761)
O3': (-21.811,-7.572,18.701)
N3: (-26.634,-11.090,16.178)
OP1: (-22.232,-4.100,15.013)
OP2: (-23.204,-5.834,13.389)
C2: (-26.346,-10.390,17.327)
C1': (-25.332,-8.412,18.320)
C3': (-23.071,-7.779,18.089)
O5': (-23.692,-5.951,15.844)
O4': (-25.280,-7.036,17.965)
C5': (-23.620,-5.452,17.169)
P: (-23.350,-4.996,14.611)
C4': (-23.933,-6.535,18.167)
C2': (-23.935,-8.805,18.816)
O2': (-23.877,-8.720,20.231)
N1: (-25.721,-9.178,17.128)
O4: (-26.678,-11.435,13.948)
O2: (-26.631,-10.809,18.443)
C6: (-25.455,-8.716,15.862)
C5: (-25.753,-9.415,14.761)
O3': (-21.811,-7.572,18.701)
OP1: (-19.406,-7.375,18.036)
OP2: (-20.926,-9.151,16.954)
C3': (-18.901,-11.772,20.131)
C1': (-20.175,-13.721,20.486)
C5': (-21.010,-10.422,19.676)
O6: (-21.677,-17.417,15.994)
O4': (-21.051,-12.616,20.587)
C8: (-20.165,-13.905,17.944)
C2: (-21.948,-17.539,19.548)
C6: (-21.579,-17.036,17.174)
C5: (-21.045,-15.822,17.670)
C4: (-21.015,-15.618,19.030)
P: (-20.523,-8.353,18.149)
C4': (-20.298,-11.384,20.586)
C2': (-18.751,-13.185,20.657)
O2': (-18.352,-13.203,22.014)
N1: (-22.020,-17.851,18.210)
N2: (-22.435,-18.440,20.414)
N3: (-21.441,-16.426,20.012)
N7: (-20.508,-14.735,16.997)
N9: (-20.439,-14.382,19.204)
O5': (-20.156,-9.345,19.340)
O3': (-17.952,-10.935,20.744)
OP2: (-20.926,-9.151,16.954)
C3': (-18.901,-11.772,20.131)
C1': (-20.175,-13.721,20.486)
C5': (-21.010,-10.422,19.676)
O6: (-21.677,-17.417,15.994)
O4': (-21.051,-12.616,20.587)
C8: (-20.165,-13.905,17.944)
C2: (-21.948,-17.539,19.548)
C6: (-21.579,-17.036,17.174)
C5: (-21.045,-15.822,17.670)
C4: (-21.015,-15.618,19.030)
P: (-20.523,-8.353,18.149)
C4': (-20.298,-11.384,20.586)
C2': (-18.751,-13.185,20.657)
O2': (-18.352,-13.203,22.014)
N1: (-22.020,-17.851,18.210)
N2: (-22.435,-18.440,20.414)
N3: (-21.441,-16.426,20.012)
N7: (-20.508,-14.735,16.997)
N9: (-20.439,-14.382,19.204)
O5': (-20.156,-9.345,19.340)
O3': (-17.952,-10.935,20.744)
Image (generated by PyMOL):