Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:C8:C9
Extra
PDB:
ATOM 1 O3' G A 7 -27.334 -46.681 10.204 1.00 25.36 O
ATOM 2 P U A 8 -27.099 -45.641 8.996 1.00 26.81 P
ATOM 3 OP1 U A 8 -26.954 -46.383 7.714 1.00 28.10 O
ATOM 4 OP2 U A 8 -26.013 -44.724 9.429 1.00 25.34 O
ATOM 5 O5' U A 8 -28.464 -44.821 8.915 1.00 21.05 O
ATOM 6 C5' U A 8 -29.645 -45.440 8.428 1.00 21.04 C
ATOM 7 C4' U A 8 -30.763 -44.434 8.314 1.00 22.05 C
ATOM 8 O4' U A 8 -31.141 -43.956 9.631 1.00 22.33 O
ATOM 9 C3' U A 8 -30.436 -43.170 7.538 1.00 22.24 C
ATOM 10 O3' U A 8 -30.503 -43.359 6.129 1.00 24.60 O
ATOM 11 C2' U A 8 -31.482 -42.198 8.062 1.00 23.57 C
ATOM 12 O2' U A 8 -32.754 -42.348 7.455 1.00 23.68 O
ATOM 13 C1' U A 8 -31.534 -42.592 9.544 1.00 24.25 C
ATOM 14 N1 U A 8 -30.592 -41.796 10.345 1.00 26.40 N
ATOM 15 C2 U A 8 -30.961 -40.514 10.699 1.00 27.65 C
ATOM 16 O2 U A 8 -32.045 -40.035 10.425 1.00 30.53 O
ATOM 17 N3 U A 8 -30.015 -39.810 11.389 1.00 29.69 N
ATOM 18 C4 U A 8 -28.770 -40.250 11.763 1.00 31.75 C
ATOM 19 O4 U A 8 -28.020 -39.489 12.367 1.00 34.71 O
ATOM 20 C5 U A 8 -28.472 -41.593 11.387 1.00 30.45 C
ATOM 21 C6 U A 8 -29.373 -42.305 10.711 1.00 28.46 C
ATOM 22 P G A 9 -29.476 -42.569 5.173 1.00 27.76 P
ATOM 23 OP1 G A 9 -29.474 -43.180 3.816 1.00 28.75 O
ATOM 24 OP2 G A 9 -28.194 -42.449 5.915 1.00 32.24 O
ATOM 25 O5' G A 9 -30.115 -41.115 5.073 1.00 23.67 O
TER
ATOM 1 O3' U B 8 -30.503 -43.359 6.129 1.00 24.60 O
ATOM 2 P G B 9 -29.476 -42.569 5.173 1.00 27.76 P
ATOM 3 OP1 G B 9 -29.474 -43.180 3.816 1.00 28.75 O
ATOM 4 OP2 G B 9 -28.194 -42.449 5.915 1.00 32.24 O
ATOM 5 O5' G B 9 -30.115 -41.115 5.073 1.00 23.67 O
ATOM 6 C5' G B 9 -31.480 -40.961 4.744 1.00 20.65 C
ATOM 7 C4' G B 9 -31.660 -39.735 3.902 1.00 21.02 C
ATOM 8 O4' G B 9 -31.676 -38.553 4.727 1.00 23.79 O
ATOM 9 C3' G B 9 -30.546 -39.472 2.909 1.00 21.79 C
ATOM 10 O3' G B 9 -30.719 -40.269 1.750 1.00 22.65 O
ATOM 11 C2' G B 9 -30.719 -37.987 2.617 1.00 23.16 C
ATOM 12 O2' G B 9 -31.706 -37.754 1.637 1.00 23.74 O
ATOM 13 C1' G B 9 -31.192 -37.456 3.977 1.00 23.67 C
ATOM 14 N9 G B 9 -30.169 -36.773 4.761 1.00 25.61 N
ATOM 15 C8 G B 9 -28.921 -37.242 5.096 1.00 27.46 C
ATOM 16 N7 G B 9 -28.207 -36.368 5.754 1.00 29.11 N
ATOM 17 C5 G B 9 -29.042 -35.261 5.870 1.00 27.48 C
ATOM 18 C6 G B 9 -28.818 -33.997 6.471 1.00 27.47 C
ATOM 19 O6 G B 9 -27.792 -33.571 7.019 1.00 32.00 O
ATOM 20 N1 G B 9 -29.943 -33.188 6.386 1.00 24.07 N
ATOM 21 C2 G B 9 -31.122 -33.541 5.802 1.00 21.48 C
ATOM 22 N2 G B 9 -32.098 -32.635 5.858 1.00 21.99 N
ATOM 23 N3 G B 9 -31.336 -34.699 5.217 1.00 23.19 N
ATOM 24 C4 G B 9 -30.262 -35.506 5.287 1.00 24.56 C
ATOM 25 P C B 10 -29.461 -40.594 0.820 1.00 21.78 P
ATOM 26 OP1 C B 10 -29.966 -41.277 -0.390 1.00 28.17 O
ATOM 27 OP2 C B 10 -28.473 -41.285 1.687 1.00 20.40 O
ATOM 28 O5' C B 10 -28.960 -39.147 0.377 1.00 19.54 O
TER
ATOM 2 P U A 8 -27.099 -45.641 8.996 1.00 26.81 P
ATOM 3 OP1 U A 8 -26.954 -46.383 7.714 1.00 28.10 O
ATOM 4 OP2 U A 8 -26.013 -44.724 9.429 1.00 25.34 O
ATOM 5 O5' U A 8 -28.464 -44.821 8.915 1.00 21.05 O
ATOM 6 C5' U A 8 -29.645 -45.440 8.428 1.00 21.04 C
ATOM 7 C4' U A 8 -30.763 -44.434 8.314 1.00 22.05 C
ATOM 8 O4' U A 8 -31.141 -43.956 9.631 1.00 22.33 O
ATOM 9 C3' U A 8 -30.436 -43.170 7.538 1.00 22.24 C
ATOM 10 O3' U A 8 -30.503 -43.359 6.129 1.00 24.60 O
ATOM 11 C2' U A 8 -31.482 -42.198 8.062 1.00 23.57 C
ATOM 12 O2' U A 8 -32.754 -42.348 7.455 1.00 23.68 O
ATOM 13 C1' U A 8 -31.534 -42.592 9.544 1.00 24.25 C
ATOM 14 N1 U A 8 -30.592 -41.796 10.345 1.00 26.40 N
ATOM 15 C2 U A 8 -30.961 -40.514 10.699 1.00 27.65 C
ATOM 16 O2 U A 8 -32.045 -40.035 10.425 1.00 30.53 O
ATOM 17 N3 U A 8 -30.015 -39.810 11.389 1.00 29.69 N
ATOM 18 C4 U A 8 -28.770 -40.250 11.763 1.00 31.75 C
ATOM 19 O4 U A 8 -28.020 -39.489 12.367 1.00 34.71 O
ATOM 20 C5 U A 8 -28.472 -41.593 11.387 1.00 30.45 C
ATOM 21 C6 U A 8 -29.373 -42.305 10.711 1.00 28.46 C
ATOM 22 P G A 9 -29.476 -42.569 5.173 1.00 27.76 P
ATOM 23 OP1 G A 9 -29.474 -43.180 3.816 1.00 28.75 O
ATOM 24 OP2 G A 9 -28.194 -42.449 5.915 1.00 32.24 O
ATOM 25 O5' G A 9 -30.115 -41.115 5.073 1.00 23.67 O
TER
ATOM 1 O3' U B 8 -30.503 -43.359 6.129 1.00 24.60 O
ATOM 2 P G B 9 -29.476 -42.569 5.173 1.00 27.76 P
ATOM 3 OP1 G B 9 -29.474 -43.180 3.816 1.00 28.75 O
ATOM 4 OP2 G B 9 -28.194 -42.449 5.915 1.00 32.24 O
ATOM 5 O5' G B 9 -30.115 -41.115 5.073 1.00 23.67 O
ATOM 6 C5' G B 9 -31.480 -40.961 4.744 1.00 20.65 C
ATOM 7 C4' G B 9 -31.660 -39.735 3.902 1.00 21.02 C
ATOM 8 O4' G B 9 -31.676 -38.553 4.727 1.00 23.79 O
ATOM 9 C3' G B 9 -30.546 -39.472 2.909 1.00 21.79 C
ATOM 10 O3' G B 9 -30.719 -40.269 1.750 1.00 22.65 O
ATOM 11 C2' G B 9 -30.719 -37.987 2.617 1.00 23.16 C
ATOM 12 O2' G B 9 -31.706 -37.754 1.637 1.00 23.74 O
ATOM 13 C1' G B 9 -31.192 -37.456 3.977 1.00 23.67 C
ATOM 14 N9 G B 9 -30.169 -36.773 4.761 1.00 25.61 N
ATOM 15 C8 G B 9 -28.921 -37.242 5.096 1.00 27.46 C
ATOM 16 N7 G B 9 -28.207 -36.368 5.754 1.00 29.11 N
ATOM 17 C5 G B 9 -29.042 -35.261 5.870 1.00 27.48 C
ATOM 18 C6 G B 9 -28.818 -33.997 6.471 1.00 27.47 C
ATOM 19 O6 G B 9 -27.792 -33.571 7.019 1.00 32.00 O
ATOM 20 N1 G B 9 -29.943 -33.188 6.386 1.00 24.07 N
ATOM 21 C2 G B 9 -31.122 -33.541 5.802 1.00 21.48 C
ATOM 22 N2 G B 9 -32.098 -32.635 5.858 1.00 21.99 N
ATOM 23 N3 G B 9 -31.336 -34.699 5.217 1.00 23.19 N
ATOM 24 C4 G B 9 -30.262 -35.506 5.287 1.00 24.56 C
ATOM 25 P C B 10 -29.461 -40.594 0.820 1.00 21.78 P
ATOM 26 OP1 C B 10 -29.966 -41.277 -0.390 1.00 28.17 O
ATOM 27 OP2 C B 10 -28.473 -41.285 1.687 1.00 20.40 O
ATOM 28 O5' C B 10 -28.960 -39.147 0.377 1.00 19.54 O
TER
Atoms:
C4: (-28.770,-40.250,11.763)
N3: (-30.015,-39.810,11.389)
OP1: (-26.954,-46.383,7.714)
OP2: (-26.013,-44.724,9.429)
C2: (-30.961,-40.514,10.699)
C1': (-31.534,-42.592,9.544)
C3': (-30.436,-43.170,7.538)
O5': (-28.464,-44.821,8.915)
O4': (-31.141,-43.956,9.631)
C5': (-29.645,-45.440,8.428)
P: (-27.099,-45.641,8.996)
C4': (-30.763,-44.434,8.314)
C2': (-31.482,-42.198,8.062)
O2': (-32.754,-42.348,7.455)
N1: (-30.592,-41.796,10.345)
O4: (-28.020,-39.489,12.367)
O2: (-32.045,-40.035,10.425)
C6: (-29.373,-42.305,10.711)
C5: (-28.472,-41.593,11.387)
O3': (-30.503,-43.359,6.129)
N3: (-30.015,-39.810,11.389)
OP1: (-26.954,-46.383,7.714)
OP2: (-26.013,-44.724,9.429)
C2: (-30.961,-40.514,10.699)
C1': (-31.534,-42.592,9.544)
C3': (-30.436,-43.170,7.538)
O5': (-28.464,-44.821,8.915)
O4': (-31.141,-43.956,9.631)
C5': (-29.645,-45.440,8.428)
P: (-27.099,-45.641,8.996)
C4': (-30.763,-44.434,8.314)
C2': (-31.482,-42.198,8.062)
O2': (-32.754,-42.348,7.455)
N1: (-30.592,-41.796,10.345)
O4: (-28.020,-39.489,12.367)
O2: (-32.045,-40.035,10.425)
C6: (-29.373,-42.305,10.711)
C5: (-28.472,-41.593,11.387)
O3': (-30.503,-43.359,6.129)
OP1: (-29.474,-43.180,3.816)
OP2: (-28.194,-42.449,5.915)
C3': (-30.546,-39.472,2.909)
C1': (-31.192,-37.456,3.977)
C5': (-31.480,-40.961,4.744)
O6: (-27.792,-33.571,7.019)
O4': (-31.676,-38.553,4.727)
C8: (-28.921,-37.242,5.096)
C2: (-31.122,-33.541,5.802)
C6: (-28.818,-33.997,6.471)
C5: (-29.042,-35.261,5.870)
C4: (-30.262,-35.506,5.287)
P: (-29.476,-42.569,5.173)
C4': (-31.660,-39.735,3.902)
C2': (-30.719,-37.987,2.617)
O2': (-31.706,-37.754,1.637)
N1: (-29.943,-33.188,6.386)
N2: (-32.098,-32.635,5.858)
N3: (-31.336,-34.699,5.217)
N7: (-28.207,-36.368,5.754)
N9: (-30.169,-36.773,4.761)
O5': (-30.115,-41.115,5.073)
O3': (-30.719,-40.269,1.750)
OP2: (-28.194,-42.449,5.915)
C3': (-30.546,-39.472,2.909)
C1': (-31.192,-37.456,3.977)
C5': (-31.480,-40.961,4.744)
O6: (-27.792,-33.571,7.019)
O4': (-31.676,-38.553,4.727)
C8: (-28.921,-37.242,5.096)
C2: (-31.122,-33.541,5.802)
C6: (-28.818,-33.997,6.471)
C5: (-29.042,-35.261,5.870)
C4: (-30.262,-35.506,5.287)
P: (-29.476,-42.569,5.173)
C4': (-31.660,-39.735,3.902)
C2': (-30.719,-37.987,2.617)
O2': (-31.706,-37.754,1.637)
N1: (-29.943,-33.188,6.386)
N2: (-32.098,-32.635,5.858)
N3: (-31.336,-34.699,5.217)
N7: (-28.207,-36.368,5.754)
N9: (-30.169,-36.773,4.761)
O5': (-30.115,-41.115,5.073)
O3': (-30.719,-40.269,1.750)
Image (generated by PyMOL):