Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:G8:G9
Extra
PDB:
ATOM 1 O3' G A 7 -8.469 -51.800 -5.174 1.00 19.62 O
ATOM 2 P U A 8 -8.086 -51.095 -3.791 1.00 19.46 P
ATOM 3 OP1 U A 8 -7.641 -52.163 -2.858 1.00 17.13 O
ATOM 4 OP2 U A 8 -9.225 -50.216 -3.417 1.00 19.18 O
ATOM 5 O5' U A 8 -6.815 -50.222 -4.178 1.00 16.89 O
ATOM 6 C5' U A 8 -5.574 -50.869 -4.362 1.00 15.57 C
ATOM 7 C4' U A 8 -4.535 -49.898 -4.822 1.00 15.75 C
ATOM 8 O4' U A 8 -4.953 -49.313 -6.069 1.00 14.63 O
ATOM 9 C3' U A 8 -4.289 -48.692 -3.933 1.00 17.19 C
ATOM 10 O3' U A 8 -3.486 -49.007 -2.799 1.00 19.43 O
ATOM 11 C2' U A 8 -3.596 -47.743 -4.897 1.00 17.29 C
ATOM 12 O2' U A 8 -2.228 -48.027 -5.115 1.00 15.70 O
ATOM 13 C1' U A 8 -4.387 -48.017 -6.180 1.00 16.76 C
ATOM 14 N1 U A 8 -5.474 -47.042 -6.302 1.00 18.52 N
ATOM 15 C2 U A 8 -5.121 -45.786 -6.760 1.00 19.96 C
ATOM 16 O2 U A 8 -3.975 -45.506 -7.109 1.00 23.97 O
ATOM 17 N3 U A 8 -6.143 -44.872 -6.800 1.00 19.38 N
ATOM 18 C4 U A 8 -7.453 -45.086 -6.447 1.00 20.33 C
ATOM 19 O4 U A 8 -8.252 -44.153 -6.527 1.00 21.99 O
ATOM 20 C5 U A 8 -7.751 -46.430 -6.008 1.00 19.45 C
ATOM 21 C6 U A 8 -6.773 -47.342 -5.955 1.00 17.23 C
ATOM 22 P G A 9 -3.948 -48.523 -1.335 1.00 20.12 P
ATOM 23 OP1 G A 9 -3.195 -49.319 -0.328 1.00 20.43 O
ATOM 24 OP2 G A 9 -5.442 -48.498 -1.292 1.00 13.81 O
ATOM 25 O5' G A 9 -3.391 -47.034 -1.266 1.00 21.35 O
TER
ATOM 1 O3' U B 8 -3.486 -49.007 -2.799 1.00 19.43 O
ATOM 2 P G B 9 -3.948 -48.523 -1.335 1.00 20.12 P
ATOM 3 OP1 G B 9 -3.195 -49.319 -0.328 1.00 20.43 O
ATOM 4 OP2 G B 9 -5.442 -48.498 -1.292 1.00 13.81 O
ATOM 5 O5' G B 9 -3.391 -47.034 -1.266 1.00 21.35 O
ATOM 6 C5' G B 9 -2.040 -46.747 -1.622 1.00 20.06 C
ATOM 7 C4' G B 9 -1.546 -45.531 -0.873 1.00 19.77 C
ATOM 8 O4' G B 9 -2.065 -44.310 -1.447 1.00 19.98 O
ATOM 9 C3' G B 9 -1.973 -45.446 0.579 1.00 18.74 C
ATOM 10 O3' G B 9 -1.130 -46.273 1.352 1.00 20.44 O
ATOM 11 C2' G B 9 -1.744 -43.973 0.896 1.00 19.36 C
ATOM 12 O2' G B 9 -0.387 -43.720 1.187 1.00 23.50 O
ATOM 13 C1' G B 9 -2.063 -43.303 -0.447 1.00 18.15 C
ATOM 14 N9 G B 9 -3.324 -42.575 -0.522 1.00 13.74 N
ATOM 15 C8 G B 9 -4.566 -43.050 -0.194 1.00 12.68 C
ATOM 16 N7 G B 9 -5.520 -42.185 -0.413 1.00 13.95 N
ATOM 17 C5 G B 9 -4.865 -41.067 -0.908 1.00 10.53 C
ATOM 18 C6 G B 9 -5.382 -39.816 -1.337 1.00 8.93 C
ATOM 19 O6 G B 9 -6.563 -39.445 -1.386 1.00 7.02 O
ATOM 20 N1 G B 9 -4.365 -38.961 -1.750 1.00 6.39 N
ATOM 21 C2 G B 9 -3.031 -39.272 -1.759 1.00 6.23 C
ATOM 22 N2 G B 9 -2.212 -38.311 -2.190 1.00 7.53 N
ATOM 23 N3 G B 9 -2.537 -40.439 -1.374 1.00 7.02 N
ATOM 24 C4 G B 9 -3.505 -41.283 -0.964 1.00 10.31 C
ATOM 25 P C B 10 -1.713 -46.996 2.650 1.00 27.35 P
ATOM 26 OP1 C B 10 -0.554 -47.528 3.425 1.00 26.28 O
ATOM 27 OP2 C B 10 -2.813 -47.910 2.228 1.00 26.56 O
ATOM 28 O5' C B 10 -2.383 -45.802 3.459 1.00 28.21 O
TER
ATOM 2 P U A 8 -8.086 -51.095 -3.791 1.00 19.46 P
ATOM 3 OP1 U A 8 -7.641 -52.163 -2.858 1.00 17.13 O
ATOM 4 OP2 U A 8 -9.225 -50.216 -3.417 1.00 19.18 O
ATOM 5 O5' U A 8 -6.815 -50.222 -4.178 1.00 16.89 O
ATOM 6 C5' U A 8 -5.574 -50.869 -4.362 1.00 15.57 C
ATOM 7 C4' U A 8 -4.535 -49.898 -4.822 1.00 15.75 C
ATOM 8 O4' U A 8 -4.953 -49.313 -6.069 1.00 14.63 O
ATOM 9 C3' U A 8 -4.289 -48.692 -3.933 1.00 17.19 C
ATOM 10 O3' U A 8 -3.486 -49.007 -2.799 1.00 19.43 O
ATOM 11 C2' U A 8 -3.596 -47.743 -4.897 1.00 17.29 C
ATOM 12 O2' U A 8 -2.228 -48.027 -5.115 1.00 15.70 O
ATOM 13 C1' U A 8 -4.387 -48.017 -6.180 1.00 16.76 C
ATOM 14 N1 U A 8 -5.474 -47.042 -6.302 1.00 18.52 N
ATOM 15 C2 U A 8 -5.121 -45.786 -6.760 1.00 19.96 C
ATOM 16 O2 U A 8 -3.975 -45.506 -7.109 1.00 23.97 O
ATOM 17 N3 U A 8 -6.143 -44.872 -6.800 1.00 19.38 N
ATOM 18 C4 U A 8 -7.453 -45.086 -6.447 1.00 20.33 C
ATOM 19 O4 U A 8 -8.252 -44.153 -6.527 1.00 21.99 O
ATOM 20 C5 U A 8 -7.751 -46.430 -6.008 1.00 19.45 C
ATOM 21 C6 U A 8 -6.773 -47.342 -5.955 1.00 17.23 C
ATOM 22 P G A 9 -3.948 -48.523 -1.335 1.00 20.12 P
ATOM 23 OP1 G A 9 -3.195 -49.319 -0.328 1.00 20.43 O
ATOM 24 OP2 G A 9 -5.442 -48.498 -1.292 1.00 13.81 O
ATOM 25 O5' G A 9 -3.391 -47.034 -1.266 1.00 21.35 O
TER
ATOM 1 O3' U B 8 -3.486 -49.007 -2.799 1.00 19.43 O
ATOM 2 P G B 9 -3.948 -48.523 -1.335 1.00 20.12 P
ATOM 3 OP1 G B 9 -3.195 -49.319 -0.328 1.00 20.43 O
ATOM 4 OP2 G B 9 -5.442 -48.498 -1.292 1.00 13.81 O
ATOM 5 O5' G B 9 -3.391 -47.034 -1.266 1.00 21.35 O
ATOM 6 C5' G B 9 -2.040 -46.747 -1.622 1.00 20.06 C
ATOM 7 C4' G B 9 -1.546 -45.531 -0.873 1.00 19.77 C
ATOM 8 O4' G B 9 -2.065 -44.310 -1.447 1.00 19.98 O
ATOM 9 C3' G B 9 -1.973 -45.446 0.579 1.00 18.74 C
ATOM 10 O3' G B 9 -1.130 -46.273 1.352 1.00 20.44 O
ATOM 11 C2' G B 9 -1.744 -43.973 0.896 1.00 19.36 C
ATOM 12 O2' G B 9 -0.387 -43.720 1.187 1.00 23.50 O
ATOM 13 C1' G B 9 -2.063 -43.303 -0.447 1.00 18.15 C
ATOM 14 N9 G B 9 -3.324 -42.575 -0.522 1.00 13.74 N
ATOM 15 C8 G B 9 -4.566 -43.050 -0.194 1.00 12.68 C
ATOM 16 N7 G B 9 -5.520 -42.185 -0.413 1.00 13.95 N
ATOM 17 C5 G B 9 -4.865 -41.067 -0.908 1.00 10.53 C
ATOM 18 C6 G B 9 -5.382 -39.816 -1.337 1.00 8.93 C
ATOM 19 O6 G B 9 -6.563 -39.445 -1.386 1.00 7.02 O
ATOM 20 N1 G B 9 -4.365 -38.961 -1.750 1.00 6.39 N
ATOM 21 C2 G B 9 -3.031 -39.272 -1.759 1.00 6.23 C
ATOM 22 N2 G B 9 -2.212 -38.311 -2.190 1.00 7.53 N
ATOM 23 N3 G B 9 -2.537 -40.439 -1.374 1.00 7.02 N
ATOM 24 C4 G B 9 -3.505 -41.283 -0.964 1.00 10.31 C
ATOM 25 P C B 10 -1.713 -46.996 2.650 1.00 27.35 P
ATOM 26 OP1 C B 10 -0.554 -47.528 3.425 1.00 26.28 O
ATOM 27 OP2 C B 10 -2.813 -47.910 2.228 1.00 26.56 O
ATOM 28 O5' C B 10 -2.383 -45.802 3.459 1.00 28.21 O
TER
Atoms:
C4: (-7.453,-45.086,-6.447)
N3: (-6.143,-44.872,-6.800)
OP1: (-7.641,-52.163,-2.858)
OP2: (-9.225,-50.216,-3.417)
C2: (-5.121,-45.786,-6.760)
C1': (-4.387,-48.017,-6.180)
C3': (-4.289,-48.692,-3.933)
O5': (-6.815,-50.222,-4.178)
O4': (-4.953,-49.313,-6.069)
C5': (-5.574,-50.869,-4.362)
P: (-8.086,-51.095,-3.791)
C4': (-4.535,-49.898,-4.822)
C2': (-3.596,-47.743,-4.897)
O2': (-2.228,-48.027,-5.115)
N1: (-5.474,-47.042,-6.302)
O4: (-8.252,-44.153,-6.527)
O2: (-3.975,-45.506,-7.109)
C6: (-6.773,-47.342,-5.955)
C5: (-7.751,-46.430,-6.008)
O3': (-3.486,-49.007,-2.799)
N3: (-6.143,-44.872,-6.800)
OP1: (-7.641,-52.163,-2.858)
OP2: (-9.225,-50.216,-3.417)
C2: (-5.121,-45.786,-6.760)
C1': (-4.387,-48.017,-6.180)
C3': (-4.289,-48.692,-3.933)
O5': (-6.815,-50.222,-4.178)
O4': (-4.953,-49.313,-6.069)
C5': (-5.574,-50.869,-4.362)
P: (-8.086,-51.095,-3.791)
C4': (-4.535,-49.898,-4.822)
C2': (-3.596,-47.743,-4.897)
O2': (-2.228,-48.027,-5.115)
N1: (-5.474,-47.042,-6.302)
O4: (-8.252,-44.153,-6.527)
O2: (-3.975,-45.506,-7.109)
C6: (-6.773,-47.342,-5.955)
C5: (-7.751,-46.430,-6.008)
O3': (-3.486,-49.007,-2.799)
OP1: (-3.195,-49.319,-0.328)
OP2: (-5.442,-48.498,-1.292)
C3': (-1.973,-45.446,0.579)
C1': (-2.063,-43.303,-0.447)
C5': (-2.040,-46.747,-1.622)
O6: (-6.563,-39.445,-1.386)
O4': (-2.065,-44.310,-1.447)
C8: (-4.566,-43.050,-0.194)
C2: (-3.031,-39.272,-1.759)
C6: (-5.382,-39.816,-1.337)
C5: (-4.865,-41.067,-0.908)
C4: (-3.505,-41.283,-0.964)
P: (-3.948,-48.523,-1.335)
C4': (-1.546,-45.531,-0.873)
C2': (-1.744,-43.973,0.896)
O2': (-0.387,-43.720,1.187)
N1: (-4.365,-38.961,-1.750)
N2: (-2.212,-38.311,-2.190)
N3: (-2.537,-40.439,-1.374)
N7: (-5.520,-42.185,-0.413)
N9: (-3.324,-42.575,-0.522)
O5': (-3.391,-47.034,-1.266)
O3': (-1.130,-46.273,1.352)
OP2: (-5.442,-48.498,-1.292)
C3': (-1.973,-45.446,0.579)
C1': (-2.063,-43.303,-0.447)
C5': (-2.040,-46.747,-1.622)
O6: (-6.563,-39.445,-1.386)
O4': (-2.065,-44.310,-1.447)
C8: (-4.566,-43.050,-0.194)
C2: (-3.031,-39.272,-1.759)
C6: (-5.382,-39.816,-1.337)
C5: (-4.865,-41.067,-0.908)
C4: (-3.505,-41.283,-0.964)
P: (-3.948,-48.523,-1.335)
C4': (-1.546,-45.531,-0.873)
C2': (-1.744,-43.973,0.896)
O2': (-0.387,-43.720,1.187)
N1: (-4.365,-38.961,-1.750)
N2: (-2.212,-38.311,-2.190)
N3: (-2.537,-40.439,-1.374)
N7: (-5.520,-42.185,-0.413)
N9: (-3.324,-42.575,-0.522)
O5': (-3.391,-47.034,-1.266)
O3': (-1.130,-46.273,1.352)
Image (generated by PyMOL):