Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M8W:D2:D3
Extra
PDB:
ATOM 1 O3' G A 1 -6.747 2.021 -0.283 0.72 63.34 O
ATOM 2 P U A 2 -5.396 2.426 0.483 0.72 63.37 P
ATOM 3 OP1 U A 2 -4.617 3.347 -0.386 0.72 63.59 O
ATOM 4 OP2 U A 2 -4.770 1.173 0.982 0.72 63.10 O
ATOM 5 O5' U A 2 -5.911 3.243 1.746 0.72 61.70 O
ATOM 6 C5' U A 2 -5.023 3.595 2.791 0.72 57.83 C
ATOM 7 C4' U A 2 -5.328 4.988 3.269 0.72 56.88 C
ATOM 8 O4' U A 2 -6.700 5.047 3.740 0.72 55.63 O
ATOM 9 C3' U A 2 -4.503 5.454 4.451 0.72 54.85 C
ATOM 10 O3' U A 2 -3.261 5.969 3.988 0.72 54.71 O
ATOM 11 C2' U A 2 -5.388 6.542 5.044 0.72 54.35 C
ATOM 12 O2' U A 2 -5.280 7.764 4.346 0.72 54.74 O
ATOM 13 C1' U A 2 -6.786 5.949 4.829 0.72 54.51 C
ATOM 14 N1 U A 2 -7.285 5.212 5.997 0.72 52.88 N
ATOM 15 C2 U A 2 -7.822 5.948 7.033 0.72 52.21 C
ATOM 16 O2 U A 2 -7.898 7.164 7.008 0.72 51.82 O
ATOM 17 N3 U A 2 -8.262 5.207 8.101 0.72 51.61 N
ATOM 18 C4 U A 2 -8.215 3.837 8.234 0.72 52.08 C
ATOM 19 O4 U A 2 -8.632 3.316 9.268 0.72 52.41 O
ATOM 20 C5 U A 2 -7.648 3.146 7.117 0.72 52.49 C
ATOM 21 C6 U A 2 -7.214 3.841 6.062 0.72 52.44 C
ATOM 22 P A A 3 -1.911 5.657 4.805 0.72 53.82 P
ATOM 23 OP1 A A 3 -0.796 5.844 3.842 0.72 56.59 O
ATOM 24 OP2 A A 3 -2.058 4.364 5.521 0.72 53.35 O
ATOM 25 O5' A A 3 -1.828 6.824 5.887 0.72 53.20 O
TER
ATOM 1 O3' U B 2 -3.261 5.969 3.988 0.72 54.71 O
ATOM 2 P A B 3 -1.911 5.657 4.805 0.72 53.82 P
ATOM 3 OP1 A B 3 -0.796 5.844 3.842 0.72 56.59 O
ATOM 4 OP2 A B 3 -2.058 4.364 5.521 0.72 53.35 O
ATOM 5 O5' A B 3 -1.828 6.824 5.887 0.72 53.20 O
ATOM 6 C5' A B 3 -1.773 8.187 5.479 0.72 53.46 C
ATOM 7 C4' A B 3 -1.400 9.073 6.645 0.72 53.84 C
ATOM 8 O4' A B 3 -2.423 8.971 7.669 0.72 52.33 O
ATOM 9 C3' A B 3 -0.106 8.731 7.373 0.72 53.87 C
ATOM 10 O3' A B 3 1.014 9.322 6.710 0.72 57.65 O
ATOM 11 C2' A B 3 -0.335 9.382 8.732 0.72 51.91 C
ATOM 12 O2' A B 3 -0.094 10.775 8.713 0.72 49.75 O
ATOM 13 C1' A B 3 -1.832 9.147 8.944 0.72 51.45 C
ATOM 14 N9 A B 3 -2.131 7.975 9.762 0.72 49.45 N
ATOM 15 C8 A B 3 -2.142 6.653 9.392 0.72 48.05 C
ATOM 16 N7 A B 3 -2.472 5.837 10.363 0.72 49.09 N
ATOM 17 C5 A B 3 -2.689 6.677 11.447 0.72 48.32 C
ATOM 18 C6 A B 3 -3.071 6.428 12.777 0.72 47.18 C
ATOM 19 N6 A B 3 -3.314 5.210 13.262 0.72 46.89 N
ATOM 20 N1 A B 3 -3.197 7.490 13.602 0.72 46.53 N
ATOM 21 C2 A B 3 -2.954 8.713 13.115 0.72 47.61 C
ATOM 22 N3 A B 3 -2.589 9.075 11.885 0.72 48.42 N
ATOM 23 C4 A B 3 -2.475 7.996 11.091 0.72 48.84 C
ATOM 24 P U B 4 2.372 8.476 6.502 0.72 59.64 P
ATOM 25 OP1 U B 4 3.000 8.951 5.240 0.72 58.55 O
ATOM 26 OP2 U B 4 2.058 7.033 6.669 0.72 57.49 O
ATOM 27 O5' U B 4 3.306 8.919 7.718 0.72 62.78 O
TER
ATOM 2 P U A 2 -5.396 2.426 0.483 0.72 63.37 P
ATOM 3 OP1 U A 2 -4.617 3.347 -0.386 0.72 63.59 O
ATOM 4 OP2 U A 2 -4.770 1.173 0.982 0.72 63.10 O
ATOM 5 O5' U A 2 -5.911 3.243 1.746 0.72 61.70 O
ATOM 6 C5' U A 2 -5.023 3.595 2.791 0.72 57.83 C
ATOM 7 C4' U A 2 -5.328 4.988 3.269 0.72 56.88 C
ATOM 8 O4' U A 2 -6.700 5.047 3.740 0.72 55.63 O
ATOM 9 C3' U A 2 -4.503 5.454 4.451 0.72 54.85 C
ATOM 10 O3' U A 2 -3.261 5.969 3.988 0.72 54.71 O
ATOM 11 C2' U A 2 -5.388 6.542 5.044 0.72 54.35 C
ATOM 12 O2' U A 2 -5.280 7.764 4.346 0.72 54.74 O
ATOM 13 C1' U A 2 -6.786 5.949 4.829 0.72 54.51 C
ATOM 14 N1 U A 2 -7.285 5.212 5.997 0.72 52.88 N
ATOM 15 C2 U A 2 -7.822 5.948 7.033 0.72 52.21 C
ATOM 16 O2 U A 2 -7.898 7.164 7.008 0.72 51.82 O
ATOM 17 N3 U A 2 -8.262 5.207 8.101 0.72 51.61 N
ATOM 18 C4 U A 2 -8.215 3.837 8.234 0.72 52.08 C
ATOM 19 O4 U A 2 -8.632 3.316 9.268 0.72 52.41 O
ATOM 20 C5 U A 2 -7.648 3.146 7.117 0.72 52.49 C
ATOM 21 C6 U A 2 -7.214 3.841 6.062 0.72 52.44 C
ATOM 22 P A A 3 -1.911 5.657 4.805 0.72 53.82 P
ATOM 23 OP1 A A 3 -0.796 5.844 3.842 0.72 56.59 O
ATOM 24 OP2 A A 3 -2.058 4.364 5.521 0.72 53.35 O
ATOM 25 O5' A A 3 -1.828 6.824 5.887 0.72 53.20 O
TER
ATOM 1 O3' U B 2 -3.261 5.969 3.988 0.72 54.71 O
ATOM 2 P A B 3 -1.911 5.657 4.805 0.72 53.82 P
ATOM 3 OP1 A B 3 -0.796 5.844 3.842 0.72 56.59 O
ATOM 4 OP2 A B 3 -2.058 4.364 5.521 0.72 53.35 O
ATOM 5 O5' A B 3 -1.828 6.824 5.887 0.72 53.20 O
ATOM 6 C5' A B 3 -1.773 8.187 5.479 0.72 53.46 C
ATOM 7 C4' A B 3 -1.400 9.073 6.645 0.72 53.84 C
ATOM 8 O4' A B 3 -2.423 8.971 7.669 0.72 52.33 O
ATOM 9 C3' A B 3 -0.106 8.731 7.373 0.72 53.87 C
ATOM 10 O3' A B 3 1.014 9.322 6.710 0.72 57.65 O
ATOM 11 C2' A B 3 -0.335 9.382 8.732 0.72 51.91 C
ATOM 12 O2' A B 3 -0.094 10.775 8.713 0.72 49.75 O
ATOM 13 C1' A B 3 -1.832 9.147 8.944 0.72 51.45 C
ATOM 14 N9 A B 3 -2.131 7.975 9.762 0.72 49.45 N
ATOM 15 C8 A B 3 -2.142 6.653 9.392 0.72 48.05 C
ATOM 16 N7 A B 3 -2.472 5.837 10.363 0.72 49.09 N
ATOM 17 C5 A B 3 -2.689 6.677 11.447 0.72 48.32 C
ATOM 18 C6 A B 3 -3.071 6.428 12.777 0.72 47.18 C
ATOM 19 N6 A B 3 -3.314 5.210 13.262 0.72 46.89 N
ATOM 20 N1 A B 3 -3.197 7.490 13.602 0.72 46.53 N
ATOM 21 C2 A B 3 -2.954 8.713 13.115 0.72 47.61 C
ATOM 22 N3 A B 3 -2.589 9.075 11.885 0.72 48.42 N
ATOM 23 C4 A B 3 -2.475 7.996 11.091 0.72 48.84 C
ATOM 24 P U B 4 2.372 8.476 6.502 0.72 59.64 P
ATOM 25 OP1 U B 4 3.000 8.951 5.240 0.72 58.55 O
ATOM 26 OP2 U B 4 2.058 7.033 6.669 0.72 57.49 O
ATOM 27 O5' U B 4 3.306 8.919 7.718 0.72 62.78 O
TER
Atoms:
C4: (-8.215,3.837,8.234)
N3: (-8.262,5.207,8.101)
OP1: (-4.617,3.347,-0.386)
OP2: (-4.770,1.173,0.982)
C2: (-7.822,5.948,7.033)
C1': (-6.786,5.949,4.829)
C3': (-4.503,5.454,4.451)
O5': (-5.911,3.243,1.746)
O4': (-6.700,5.047,3.740)
C5': (-5.023,3.595,2.791)
P: (-5.396,2.426,0.483)
C4': (-5.328,4.988,3.269)
C2': (-5.388,6.542,5.044)
O2': (-5.280,7.764,4.346)
N1: (-7.285,5.212,5.997)
O4: (-8.632,3.316,9.268)
O2: (-7.898,7.164,7.008)
C6: (-7.214,3.841,6.062)
C5: (-7.648,3.146,7.117)
O3': (-3.261,5.969,3.988)
N3: (-8.262,5.207,8.101)
OP1: (-4.617,3.347,-0.386)
OP2: (-4.770,1.173,0.982)
C2: (-7.822,5.948,7.033)
C1': (-6.786,5.949,4.829)
C3': (-4.503,5.454,4.451)
O5': (-5.911,3.243,1.746)
O4': (-6.700,5.047,3.740)
C5': (-5.023,3.595,2.791)
P: (-5.396,2.426,0.483)
C4': (-5.328,4.988,3.269)
C2': (-5.388,6.542,5.044)
O2': (-5.280,7.764,4.346)
N1: (-7.285,5.212,5.997)
O4: (-8.632,3.316,9.268)
O2: (-7.898,7.164,7.008)
C6: (-7.214,3.841,6.062)
C5: (-7.648,3.146,7.117)
O3': (-3.261,5.969,3.988)
OP1: (-0.796,5.844,3.842)
OP2: (-2.058,4.364,5.521)
C3': (-0.106,8.731,7.373)
C1': (-1.832,9.147,8.944)
C5': (-1.773,8.187,5.479)
O4': (-2.423,8.971,7.669)
C8: (-2.142,6.653,9.392)
O2': (-0.094,10.775,8.713)
C6: (-3.071,6.428,12.777)
C5: (-2.689,6.677,11.447)
C4: (-2.475,7.996,11.091)
P: (-1.911,5.657,4.805)
C4': (-1.400,9.073,6.645)
C2': (-0.335,9.382,8.732)
C2: (-2.954,8.713,13.115)
N1: (-3.197,7.490,13.602)
N3: (-2.589,9.075,11.885)
N6: (-3.314,5.210,13.262)
N7: (-2.472,5.837,10.363)
N9: (-2.131,7.975,9.762)
O5': (-1.828,6.824,5.887)
O3': (1.014,9.322,6.710)
OP2: (-2.058,4.364,5.521)
C3': (-0.106,8.731,7.373)
C1': (-1.832,9.147,8.944)
C5': (-1.773,8.187,5.479)
O4': (-2.423,8.971,7.669)
C8: (-2.142,6.653,9.392)
O2': (-0.094,10.775,8.713)
C6: (-3.071,6.428,12.777)
C5: (-2.689,6.677,11.447)
C4: (-2.475,7.996,11.091)
P: (-1.911,5.657,4.805)
C4': (-1.400,9.073,6.645)
C2': (-0.335,9.382,8.732)
C2: (-2.954,8.713,13.115)
N1: (-3.197,7.490,13.602)
N3: (-2.589,9.075,11.885)
N6: (-3.314,5.210,13.262)
N7: (-2.472,5.837,10.363)
N9: (-2.131,7.975,9.762)
O5': (-1.828,6.824,5.887)
O3': (1.014,9.322,6.710)
Image (generated by PyMOL):