Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M8Y:C4:C5
Extra
PDB:
ATOM 1 O3' G A 3 33.034 -19.226 60.576 1.00 15.08 O
ATOM 2 P U A 4 32.880 -17.708 60.077 1.00 16.37 P
ATOM 3 OP1 U A 4 32.425 -17.838 58.679 1.00 18.61 O
ATOM 4 OP2 U A 4 34.101 -16.911 60.375 1.00 17.35 O
ATOM 5 O5' U A 4 31.697 -17.116 60.961 1.00 16.05 O
ATOM 6 C5' U A 4 31.438 -15.716 60.977 1.00 18.09 C
ATOM 7 C4' U A 4 29.978 -15.451 60.692 1.00 21.04 C
ATOM 8 O4' U A 4 29.175 -16.059 61.739 1.00 20.67 O
ATOM 9 C3' U A 4 29.538 -13.992 60.691 1.00 20.84 C
ATOM 10 O3' U A 4 29.790 -13.384 59.421 1.00 22.36 O
ATOM 11 C2' U A 4 28.044 -14.133 60.946 1.00 20.95 C
ATOM 12 O2' U A 4 27.340 -14.518 59.786 1.00 20.14 O
ATOM 13 C1' U A 4 28.013 -15.287 61.949 1.00 19.39 C
ATOM 14 N1 U A 4 28.003 -14.831 63.344 1.00 17.46 N
ATOM 15 C2 U A 4 26.800 -14.417 63.849 1.00 16.50 C
ATOM 16 O2 U A 4 25.785 -14.432 63.195 1.00 15.97 O
ATOM 17 N3 U A 4 26.829 -13.986 65.151 1.00 18.16 N
ATOM 18 C4 U A 4 27.923 -13.930 65.979 1.00 17.95 C
ATOM 19 O4 U A 4 27.792 -13.483 67.118 1.00 20.39 O
ATOM 20 C5 U A 4 29.142 -14.383 65.385 1.00 17.37 C
ATOM 21 C6 U A 4 29.139 -14.810 64.116 1.00 18.11 C
ATOM 22 P A A 5 30.236 -11.832 59.333 1.00 22.97 P
ATOM 23 OP1 A A 5 30.817 -11.681 57.981 1.00 19.93 O
ATOM 24 OP2 A A 5 31.038 -11.450 60.516 1.00 18.57 O
ATOM 25 O5' A A 5 28.868 -11.008 59.393 1.00 25.31 O
TER
ATOM 1 O3' U B 4 29.790 -13.384 59.421 1.00 22.36 O
ATOM 2 P A B 5 30.236 -11.832 59.333 1.00 22.97 P
ATOM 3 OP1 A B 5 30.817 -11.681 57.981 1.00 19.93 O
ATOM 4 OP2 A B 5 31.038 -11.450 60.516 1.00 18.57 O
ATOM 5 O5' A B 5 28.868 -11.008 59.393 1.00 25.31 O
ATOM 6 C5' A B 5 27.844 -11.230 58.429 1.00 25.97 C
ATOM 7 C4' A B 5 26.784 -10.154 58.510 1.00 29.44 C
ATOM 8 O4' A B 5 26.095 -10.234 59.784 1.00 29.98 O
ATOM 9 C3' A B 5 27.243 -8.708 58.471 1.00 32.31 C
ATOM 10 O3' A B 5 27.535 -8.264 57.148 1.00 39.96 O
ATOM 11 C2' A B 5 26.018 -7.992 59.019 1.00 30.51 C
ATOM 12 O2' A B 5 24.994 -7.862 58.058 1.00 32.67 O
ATOM 13 C1' A B 5 25.567 -8.958 60.115 1.00 28.02 C
ATOM 14 N9 A B 5 26.054 -8.554 61.440 1.00 24.13 N
ATOM 15 C8 A B 5 27.318 -8.692 61.965 1.00 22.26 C
ATOM 16 N7 A B 5 27.457 -8.160 63.156 1.00 20.10 N
ATOM 17 C5 A B 5 26.201 -7.649 63.443 1.00 19.30 C
ATOM 18 C6 A B 5 25.696 -6.954 64.557 1.00 19.27 C
ATOM 19 N6 A B 5 26.437 -6.621 65.609 1.00 17.89 N
ATOM 20 N1 A B 5 24.386 -6.607 64.547 1.00 17.99 N
ATOM 21 C2 A B 5 23.649 -6.932 63.474 1.00 18.23 C
ATOM 22 N3 A B 5 24.014 -7.570 62.360 1.00 19.24 N
ATOM 23 C4 A B 5 25.319 -7.905 62.408 1.00 20.92 C
ATOM 24 P C B 6 28.567 -7.047 56.925 1.00 47.15 P
ATOM 25 OP1 C B 6 28.605 -6.764 55.475 1.00 44.54 O
ATOM 26 OP2 C B 6 29.834 -7.328 57.652 1.00 45.72 O
ATOM 27 O5' C B 6 27.873 -5.819 57.660 1.00 50.01 O
TER
ATOM 2 P U A 4 32.880 -17.708 60.077 1.00 16.37 P
ATOM 3 OP1 U A 4 32.425 -17.838 58.679 1.00 18.61 O
ATOM 4 OP2 U A 4 34.101 -16.911 60.375 1.00 17.35 O
ATOM 5 O5' U A 4 31.697 -17.116 60.961 1.00 16.05 O
ATOM 6 C5' U A 4 31.438 -15.716 60.977 1.00 18.09 C
ATOM 7 C4' U A 4 29.978 -15.451 60.692 1.00 21.04 C
ATOM 8 O4' U A 4 29.175 -16.059 61.739 1.00 20.67 O
ATOM 9 C3' U A 4 29.538 -13.992 60.691 1.00 20.84 C
ATOM 10 O3' U A 4 29.790 -13.384 59.421 1.00 22.36 O
ATOM 11 C2' U A 4 28.044 -14.133 60.946 1.00 20.95 C
ATOM 12 O2' U A 4 27.340 -14.518 59.786 1.00 20.14 O
ATOM 13 C1' U A 4 28.013 -15.287 61.949 1.00 19.39 C
ATOM 14 N1 U A 4 28.003 -14.831 63.344 1.00 17.46 N
ATOM 15 C2 U A 4 26.800 -14.417 63.849 1.00 16.50 C
ATOM 16 O2 U A 4 25.785 -14.432 63.195 1.00 15.97 O
ATOM 17 N3 U A 4 26.829 -13.986 65.151 1.00 18.16 N
ATOM 18 C4 U A 4 27.923 -13.930 65.979 1.00 17.95 C
ATOM 19 O4 U A 4 27.792 -13.483 67.118 1.00 20.39 O
ATOM 20 C5 U A 4 29.142 -14.383 65.385 1.00 17.37 C
ATOM 21 C6 U A 4 29.139 -14.810 64.116 1.00 18.11 C
ATOM 22 P A A 5 30.236 -11.832 59.333 1.00 22.97 P
ATOM 23 OP1 A A 5 30.817 -11.681 57.981 1.00 19.93 O
ATOM 24 OP2 A A 5 31.038 -11.450 60.516 1.00 18.57 O
ATOM 25 O5' A A 5 28.868 -11.008 59.393 1.00 25.31 O
TER
ATOM 1 O3' U B 4 29.790 -13.384 59.421 1.00 22.36 O
ATOM 2 P A B 5 30.236 -11.832 59.333 1.00 22.97 P
ATOM 3 OP1 A B 5 30.817 -11.681 57.981 1.00 19.93 O
ATOM 4 OP2 A B 5 31.038 -11.450 60.516 1.00 18.57 O
ATOM 5 O5' A B 5 28.868 -11.008 59.393 1.00 25.31 O
ATOM 6 C5' A B 5 27.844 -11.230 58.429 1.00 25.97 C
ATOM 7 C4' A B 5 26.784 -10.154 58.510 1.00 29.44 C
ATOM 8 O4' A B 5 26.095 -10.234 59.784 1.00 29.98 O
ATOM 9 C3' A B 5 27.243 -8.708 58.471 1.00 32.31 C
ATOM 10 O3' A B 5 27.535 -8.264 57.148 1.00 39.96 O
ATOM 11 C2' A B 5 26.018 -7.992 59.019 1.00 30.51 C
ATOM 12 O2' A B 5 24.994 -7.862 58.058 1.00 32.67 O
ATOM 13 C1' A B 5 25.567 -8.958 60.115 1.00 28.02 C
ATOM 14 N9 A B 5 26.054 -8.554 61.440 1.00 24.13 N
ATOM 15 C8 A B 5 27.318 -8.692 61.965 1.00 22.26 C
ATOM 16 N7 A B 5 27.457 -8.160 63.156 1.00 20.10 N
ATOM 17 C5 A B 5 26.201 -7.649 63.443 1.00 19.30 C
ATOM 18 C6 A B 5 25.696 -6.954 64.557 1.00 19.27 C
ATOM 19 N6 A B 5 26.437 -6.621 65.609 1.00 17.89 N
ATOM 20 N1 A B 5 24.386 -6.607 64.547 1.00 17.99 N
ATOM 21 C2 A B 5 23.649 -6.932 63.474 1.00 18.23 C
ATOM 22 N3 A B 5 24.014 -7.570 62.360 1.00 19.24 N
ATOM 23 C4 A B 5 25.319 -7.905 62.408 1.00 20.92 C
ATOM 24 P C B 6 28.567 -7.047 56.925 1.00 47.15 P
ATOM 25 OP1 C B 6 28.605 -6.764 55.475 1.00 44.54 O
ATOM 26 OP2 C B 6 29.834 -7.328 57.652 1.00 45.72 O
ATOM 27 O5' C B 6 27.873 -5.819 57.660 1.00 50.01 O
TER
Atoms:
C4: (27.923,-13.930,65.979)
N3: (26.829,-13.986,65.151)
OP1: (32.425,-17.838,58.679)
OP2: (34.101,-16.911,60.375)
C2: (26.800,-14.417,63.849)
C1': (28.013,-15.287,61.949)
C3': (29.538,-13.992,60.691)
O5': (31.697,-17.116,60.961)
O4': (29.175,-16.059,61.739)
C5': (31.438,-15.716,60.977)
P: (32.880,-17.708,60.077)
C4': (29.978,-15.451,60.692)
C2': (28.044,-14.133,60.946)
O2': (27.340,-14.518,59.786)
N1: (28.003,-14.831,63.344)
O4: (27.792,-13.483,67.118)
O2: (25.785,-14.432,63.195)
C6: (29.139,-14.810,64.116)
C5: (29.142,-14.383,65.385)
O3': (29.790,-13.384,59.421)
N3: (26.829,-13.986,65.151)
OP1: (32.425,-17.838,58.679)
OP2: (34.101,-16.911,60.375)
C2: (26.800,-14.417,63.849)
C1': (28.013,-15.287,61.949)
C3': (29.538,-13.992,60.691)
O5': (31.697,-17.116,60.961)
O4': (29.175,-16.059,61.739)
C5': (31.438,-15.716,60.977)
P: (32.880,-17.708,60.077)
C4': (29.978,-15.451,60.692)
C2': (28.044,-14.133,60.946)
O2': (27.340,-14.518,59.786)
N1: (28.003,-14.831,63.344)
O4: (27.792,-13.483,67.118)
O2: (25.785,-14.432,63.195)
C6: (29.139,-14.810,64.116)
C5: (29.142,-14.383,65.385)
O3': (29.790,-13.384,59.421)
OP1: (30.817,-11.681,57.981)
OP2: (31.038,-11.450,60.516)
C3': (27.243,-8.708,58.471)
C1': (25.567,-8.958,60.115)
C5': (27.844,-11.230,58.429)
O4': (26.095,-10.234,59.784)
C8: (27.318,-8.692,61.965)
O2': (24.994,-7.862,58.058)
C6: (25.696,-6.954,64.557)
C5: (26.201,-7.649,63.443)
C4: (25.319,-7.905,62.408)
P: (30.236,-11.832,59.333)
C4': (26.784,-10.154,58.510)
C2': (26.018,-7.992,59.019)
C2: (23.649,-6.932,63.474)
N1: (24.386,-6.607,64.547)
N3: (24.014,-7.570,62.360)
N6: (26.437,-6.621,65.609)
N7: (27.457,-8.160,63.156)
N9: (26.054,-8.554,61.440)
O5': (28.868,-11.008,59.393)
O3': (27.535,-8.264,57.148)
OP2: (31.038,-11.450,60.516)
C3': (27.243,-8.708,58.471)
C1': (25.567,-8.958,60.115)
C5': (27.844,-11.230,58.429)
O4': (26.095,-10.234,59.784)
C8: (27.318,-8.692,61.965)
O2': (24.994,-7.862,58.058)
C6: (25.696,-6.954,64.557)
C5: (26.201,-7.649,63.443)
C4: (25.319,-7.905,62.408)
P: (30.236,-11.832,59.333)
C4': (26.784,-10.154,58.510)
C2': (26.018,-7.992,59.019)
C2: (23.649,-6.932,63.474)
N1: (24.386,-6.607,64.547)
N3: (24.014,-7.570,62.360)
N6: (26.437,-6.621,65.609)
N7: (27.457,-8.160,63.156)
N9: (26.054,-8.554,61.440)
O5': (28.868,-11.008,59.393)
O3': (27.535,-8.264,57.148)
Image (generated by PyMOL):