Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M8Y:D4:D5
Extra
PDB:
ATOM 1 O3' G A 3 27.363 13.116 4.545 1.00 32.69 O
ATOM 2 P U A 4 27.555 12.036 5.719 1.00 35.41 P
ATOM 3 OP1 U A 4 28.298 10.881 5.150 1.00 33.20 O
ATOM 4 OP2 U A 4 26.224 11.820 6.361 1.00 30.39 O
ATOM 5 O5' U A 4 28.545 12.726 6.760 1.00 31.85 O
ATOM 6 C5' U A 4 28.851 12.080 7.990 1.00 31.73 C
ATOM 7 C4' U A 4 30.295 11.624 8.015 1.00 31.79 C
ATOM 8 O4' U A 4 31.177 12.774 7.969 1.00 31.69 O
ATOM 9 C3' U A 4 30.659 10.900 9.300 1.00 32.33 C
ATOM 10 O3' U A 4 30.388 9.517 9.158 1.00 32.96 O
ATOM 11 C2' U A 4 32.146 11.179 9.459 1.00 31.98 C
ATOM 12 O2' U A 4 32.987 10.255 8.805 1.00 34.60 O
ATOM 13 C1' U A 4 32.263 12.585 8.862 1.00 30.42 C
ATOM 14 N1 U A 4 32.203 13.634 9.891 1.00 25.11 N
ATOM 15 C2 U A 4 33.394 14.056 10.429 1.00 23.06 C
ATOM 16 O2 U A 4 34.473 13.615 10.061 1.00 20.78 O
ATOM 17 N3 U A 4 33.278 15.016 11.407 1.00 22.01 N
ATOM 18 C4 U A 4 32.104 15.587 11.878 1.00 23.10 C
ATOM 19 O4 U A 4 32.150 16.396 12.814 1.00 24.84 O
ATOM 20 C5 U A 4 30.914 15.105 11.248 1.00 22.28 C
ATOM 21 C6 U A 4 31.002 14.169 10.305 1.00 22.90 C
ATOM 22 P A A 5 29.552 8.747 10.288 1.00 32.45 P
ATOM 23 OP1 A A 5 28.872 7.639 9.577 1.00 30.23 O
ATOM 24 OP2 A A 5 28.751 9.724 11.066 1.00 28.93 O
ATOM 25 O5' A A 5 30.681 8.160 11.243 1.00 32.70 O
TER
ATOM 1 O3' U B 4 30.388 9.517 9.158 1.00 32.96 O
ATOM 2 P A B 5 29.552 8.747 10.288 1.00 32.45 P
ATOM 3 OP1 A B 5 28.872 7.639 9.577 1.00 30.23 O
ATOM 4 OP2 A B 5 28.751 9.724 11.066 1.00 28.93 O
ATOM 5 O5' A B 5 30.681 8.160 11.243 1.00 32.70 O
ATOM 6 C5' A B 5 31.865 7.591 10.696 1.00 34.08 C
ATOM 7 C4' A B 5 32.760 7.080 11.797 1.00 37.01 C
ATOM 8 O4' A B 5 33.502 8.166 12.417 1.00 37.71 O
ATOM 9 C3' A B 5 32.069 6.419 12.978 1.00 38.11 C
ATOM 10 O3' A B 5 31.671 5.089 12.679 1.00 39.92 O
ATOM 11 C2' A B 5 33.176 6.435 14.021 1.00 37.23 C
ATOM 12 O2' A B 5 34.113 5.403 13.781 1.00 37.45 O
ATOM 13 C1' A B 5 33.832 7.793 13.748 1.00 36.66 C
ATOM 14 N9 A B 5 33.415 8.856 14.667 1.00 34.77 N
ATOM 15 C8 A B 5 32.225 9.542 14.725 1.00 33.65 C
ATOM 16 N7 A B 5 32.186 10.451 15.672 1.00 31.59 N
ATOM 17 C5 A B 5 33.430 10.353 16.280 1.00 31.65 C
ATOM 18 C6 A B 5 34.022 11.053 17.346 1.00 33.18 C
ATOM 19 N6 A B 5 33.409 12.023 18.024 1.00 34.33 N
ATOM 20 N1 A B 5 35.286 10.718 17.697 1.00 33.76 N
ATOM 21 C2 A B 5 35.900 9.741 17.020 1.00 33.32 C
ATOM 22 N3 A B 5 35.449 9.011 16.004 1.00 33.68 N
ATOM 23 C4 A B 5 34.194 9.372 15.677 1.00 33.20 C
ATOM 24 P C B 6 30.627 4.344 13.640 1.00 43.81 P
ATOM 25 OP1 C B 6 30.364 3.020 13.023 1.00 39.25 O
ATOM 26 OP2 C B 6 29.497 5.267 13.920 1.00 40.02 O
ATOM 27 O5' C B 6 31.441 4.157 14.998 1.00 44.80 O
TER
ATOM 2 P U A 4 27.555 12.036 5.719 1.00 35.41 P
ATOM 3 OP1 U A 4 28.298 10.881 5.150 1.00 33.20 O
ATOM 4 OP2 U A 4 26.224 11.820 6.361 1.00 30.39 O
ATOM 5 O5' U A 4 28.545 12.726 6.760 1.00 31.85 O
ATOM 6 C5' U A 4 28.851 12.080 7.990 1.00 31.73 C
ATOM 7 C4' U A 4 30.295 11.624 8.015 1.00 31.79 C
ATOM 8 O4' U A 4 31.177 12.774 7.969 1.00 31.69 O
ATOM 9 C3' U A 4 30.659 10.900 9.300 1.00 32.33 C
ATOM 10 O3' U A 4 30.388 9.517 9.158 1.00 32.96 O
ATOM 11 C2' U A 4 32.146 11.179 9.459 1.00 31.98 C
ATOM 12 O2' U A 4 32.987 10.255 8.805 1.00 34.60 O
ATOM 13 C1' U A 4 32.263 12.585 8.862 1.00 30.42 C
ATOM 14 N1 U A 4 32.203 13.634 9.891 1.00 25.11 N
ATOM 15 C2 U A 4 33.394 14.056 10.429 1.00 23.06 C
ATOM 16 O2 U A 4 34.473 13.615 10.061 1.00 20.78 O
ATOM 17 N3 U A 4 33.278 15.016 11.407 1.00 22.01 N
ATOM 18 C4 U A 4 32.104 15.587 11.878 1.00 23.10 C
ATOM 19 O4 U A 4 32.150 16.396 12.814 1.00 24.84 O
ATOM 20 C5 U A 4 30.914 15.105 11.248 1.00 22.28 C
ATOM 21 C6 U A 4 31.002 14.169 10.305 1.00 22.90 C
ATOM 22 P A A 5 29.552 8.747 10.288 1.00 32.45 P
ATOM 23 OP1 A A 5 28.872 7.639 9.577 1.00 30.23 O
ATOM 24 OP2 A A 5 28.751 9.724 11.066 1.00 28.93 O
ATOM 25 O5' A A 5 30.681 8.160 11.243 1.00 32.70 O
TER
ATOM 1 O3' U B 4 30.388 9.517 9.158 1.00 32.96 O
ATOM 2 P A B 5 29.552 8.747 10.288 1.00 32.45 P
ATOM 3 OP1 A B 5 28.872 7.639 9.577 1.00 30.23 O
ATOM 4 OP2 A B 5 28.751 9.724 11.066 1.00 28.93 O
ATOM 5 O5' A B 5 30.681 8.160 11.243 1.00 32.70 O
ATOM 6 C5' A B 5 31.865 7.591 10.696 1.00 34.08 C
ATOM 7 C4' A B 5 32.760 7.080 11.797 1.00 37.01 C
ATOM 8 O4' A B 5 33.502 8.166 12.417 1.00 37.71 O
ATOM 9 C3' A B 5 32.069 6.419 12.978 1.00 38.11 C
ATOM 10 O3' A B 5 31.671 5.089 12.679 1.00 39.92 O
ATOM 11 C2' A B 5 33.176 6.435 14.021 1.00 37.23 C
ATOM 12 O2' A B 5 34.113 5.403 13.781 1.00 37.45 O
ATOM 13 C1' A B 5 33.832 7.793 13.748 1.00 36.66 C
ATOM 14 N9 A B 5 33.415 8.856 14.667 1.00 34.77 N
ATOM 15 C8 A B 5 32.225 9.542 14.725 1.00 33.65 C
ATOM 16 N7 A B 5 32.186 10.451 15.672 1.00 31.59 N
ATOM 17 C5 A B 5 33.430 10.353 16.280 1.00 31.65 C
ATOM 18 C6 A B 5 34.022 11.053 17.346 1.00 33.18 C
ATOM 19 N6 A B 5 33.409 12.023 18.024 1.00 34.33 N
ATOM 20 N1 A B 5 35.286 10.718 17.697 1.00 33.76 N
ATOM 21 C2 A B 5 35.900 9.741 17.020 1.00 33.32 C
ATOM 22 N3 A B 5 35.449 9.011 16.004 1.00 33.68 N
ATOM 23 C4 A B 5 34.194 9.372 15.677 1.00 33.20 C
ATOM 24 P C B 6 30.627 4.344 13.640 1.00 43.81 P
ATOM 25 OP1 C B 6 30.364 3.020 13.023 1.00 39.25 O
ATOM 26 OP2 C B 6 29.497 5.267 13.920 1.00 40.02 O
ATOM 27 O5' C B 6 31.441 4.157 14.998 1.00 44.80 O
TER
Atoms:
C4: (32.104,15.587,11.878)
N3: (33.278,15.016,11.407)
OP1: (28.298,10.881,5.150)
OP2: (26.224,11.820,6.361)
C2: (33.394,14.056,10.429)
C1': (32.263,12.585,8.862)
C3': (30.659,10.900,9.300)
O5': (28.545,12.726,6.760)
O4': (31.177,12.774,7.969)
C5': (28.851,12.080,7.990)
P: (27.555,12.036,5.719)
C4': (30.295,11.624,8.015)
C2': (32.146,11.179,9.459)
O2': (32.987,10.255,8.805)
N1: (32.203,13.634,9.891)
O4: (32.150,16.396,12.814)
O2: (34.473,13.615,10.061)
C6: (31.002,14.169,10.305)
C5: (30.914,15.105,11.248)
O3': (30.388,9.517,9.158)
N3: (33.278,15.016,11.407)
OP1: (28.298,10.881,5.150)
OP2: (26.224,11.820,6.361)
C2: (33.394,14.056,10.429)
C1': (32.263,12.585,8.862)
C3': (30.659,10.900,9.300)
O5': (28.545,12.726,6.760)
O4': (31.177,12.774,7.969)
C5': (28.851,12.080,7.990)
P: (27.555,12.036,5.719)
C4': (30.295,11.624,8.015)
C2': (32.146,11.179,9.459)
O2': (32.987,10.255,8.805)
N1: (32.203,13.634,9.891)
O4: (32.150,16.396,12.814)
O2: (34.473,13.615,10.061)
C6: (31.002,14.169,10.305)
C5: (30.914,15.105,11.248)
O3': (30.388,9.517,9.158)
OP1: (28.872,7.639,9.577)
OP2: (28.751,9.724,11.066)
C3': (32.069,6.419,12.978)
C1': (33.832,7.793,13.748)
C5': (31.865,7.591,10.696)
O4': (33.502,8.166,12.417)
C8: (32.225,9.542,14.725)
O2': (34.113,5.403,13.781)
C6: (34.022,11.053,17.346)
C5: (33.430,10.353,16.280)
C4: (34.194,9.372,15.677)
P: (29.552,8.747,10.288)
C4': (32.760,7.080,11.797)
C2': (33.176,6.435,14.021)
C2: (35.900,9.741,17.020)
N1: (35.286,10.718,17.697)
N3: (35.449,9.011,16.004)
N6: (33.409,12.023,18.024)
N7: (32.186,10.451,15.672)
N9: (33.415,8.856,14.667)
O5': (30.681,8.160,11.243)
O3': (31.671,5.089,12.679)
OP2: (28.751,9.724,11.066)
C3': (32.069,6.419,12.978)
C1': (33.832,7.793,13.748)
C5': (31.865,7.591,10.696)
O4': (33.502,8.166,12.417)
C8: (32.225,9.542,14.725)
O2': (34.113,5.403,13.781)
C6: (34.022,11.053,17.346)
C5: (33.430,10.353,16.280)
C4: (34.194,9.372,15.677)
P: (29.552,8.747,10.288)
C4': (32.760,7.080,11.797)
C2': (33.176,6.435,14.021)
C2: (35.900,9.741,17.020)
N1: (35.286,10.718,17.697)
N3: (35.449,9.011,16.004)
N6: (33.409,12.023,18.024)
N7: (32.186,10.451,15.672)
N9: (33.415,8.856,14.667)
O5': (30.681,8.160,11.243)
O3': (31.671,5.089,12.679)
Image (generated by PyMOL):