Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11240:11153
Extra
PDB:
ATOM 1 O3' G A1239 36.047 -3.512 8.796 1.00 46.79 O
ATOM 2 P C A1240 35.578 -2.932 10.243 1.00 44.04 P
ATOM 3 OP1 C A1240 36.544 -3.428 11.253 1.00 43.60 O
ATOM 4 OP2 C A1240 34.141 -3.257 10.416 1.00 44.08 O
ATOM 5 O5' C A1240 35.747 -1.361 10.081 1.00 44.12 O
ATOM 6 C5' C A1240 37.022 -0.771 10.060 1.00 44.05 C
ATOM 7 C4' C A1240 37.006 0.544 9.349 1.00 44.35 C
ATOM 8 O4' C A1240 36.546 0.352 7.989 1.00 44.87 O
ATOM 9 C3' C A1240 36.061 1.587 9.907 1.00 44.27 C
ATOM 10 O3' C A1240 36.592 2.259 11.021 1.00 43.88 O
ATOM 11 C2' C A1240 35.869 2.494 8.717 1.00 44.76 C
ATOM 12 O2' C A1240 37.012 3.300 8.555 1.00 44.77 O
ATOM 13 C1' C A1240 35.816 1.478 7.571 1.00 45.13 C
ATOM 14 N1 C A1240 34.421 1.058 7.272 1.00 45.33 N
ATOM 15 C2 C A1240 33.608 1.884 6.484 1.00 45.73 C
ATOM 16 O2 C A1240 34.091 2.910 6.034 1.00 45.91 O
ATOM 17 N3 C A1240 32.326 1.569 6.208 1.00 45.94 N
ATOM 18 C4 C A1240 31.821 0.466 6.684 1.00 45.76 C
ATOM 19 N4 C A1240 30.568 0.219 6.389 1.00 45.98 N
ATOM 20 C5 C A1240 32.604 -0.415 7.488 1.00 45.35 C
ATOM 21 C6 C A1240 33.884 -0.095 7.771 1.00 45.14 C
ATOM 22 P C A1241 35.634 2.864 12.176 1.00 41.99 P
ATOM 23 OP1 C A1241 36.511 3.577 13.121 1.00 41.65 O
ATOM 24 OP2 C A1241 34.793 1.738 12.682 1.00 41.82 O
ATOM 25 O5' C A1241 34.738 3.916 11.407 1.00 42.38 O
TER
ATOM 1 O3' U B1152 22.910 6.708 0.379 1.00 67.42 O
ATOM 2 P G B1153 23.991 6.702 1.531 1.00 56.55 P
ATOM 3 OP1 G B1153 24.029 5.294 2.049 1.00 56.22 O
ATOM 4 OP2 G B1153 23.625 7.834 2.469 1.00 56.31 O
ATOM 5 O5' G B1153 25.351 7.050 0.756 1.00 56.72 O
ATOM 6 C5' G B1153 25.731 8.401 0.579 1.00 56.86 C
ATOM 7 C4' G B1153 27.008 8.732 1.299 1.00 56.43 C
ATOM 8 O4' G B1153 26.958 8.293 2.677 1.00 55.83 O
ATOM 9 C3' G B1153 28.251 8.067 0.768 1.00 56.43 C
ATOM 10 O3' G B1153 28.706 8.669 -0.410 1.00 56.92 O
ATOM 11 C2' G B1153 29.206 8.201 1.940 1.00 55.85 C
ATOM 12 O2' G B1153 29.618 9.539 2.068 1.00 55.88 O
ATOM 13 C1' G B1153 28.268 7.922 3.100 1.00 55.47 C
ATOM 14 N9 G B1153 28.265 6.502 3.485 1.00 55.20 N
ATOM 15 C8 G B1153 27.168 5.712 3.409 1.00 55.30 C
ATOM 16 N7 G B1153 27.386 4.503 3.816 1.00 55.02 N
ATOM 17 C5 G B1153 28.713 4.465 4.197 1.00 54.72 C
ATOM 18 C6 G B1153 29.495 3.399 4.713 1.00 54.36 C
ATOM 19 O6 G B1153 29.213 2.241 4.963 1.00 54.23 O
ATOM 20 N1 G B1153 30.774 3.794 4.958 1.00 54.15 N
ATOM 21 C2 G B1153 31.248 5.043 4.730 1.00 54.27 C
ATOM 22 N2 G B1153 32.531 5.223 5.029 1.00 54.04 N
ATOM 23 N3 G B1153 30.532 6.051 4.255 1.00 54.61 N
ATOM 24 C4 G B1153 29.263 5.707 3.999 1.00 54.82 C
ATOM 25 P U B1154 28.658 7.846 -1.776 1.00 50.90 P
ATOM 26 OP1 U B1154 28.745 8.837 -2.891 1.00 51.46 O
ATOM 27 OP2 U B1154 27.476 6.938 -1.709 1.00 50.94 O
ATOM 28 O5' U B1154 30.011 6.983 -1.709 1.00 50.64 O
TER
ATOM 2 P C A1240 35.578 -2.932 10.243 1.00 44.04 P
ATOM 3 OP1 C A1240 36.544 -3.428 11.253 1.00 43.60 O
ATOM 4 OP2 C A1240 34.141 -3.257 10.416 1.00 44.08 O
ATOM 5 O5' C A1240 35.747 -1.361 10.081 1.00 44.12 O
ATOM 6 C5' C A1240 37.022 -0.771 10.060 1.00 44.05 C
ATOM 7 C4' C A1240 37.006 0.544 9.349 1.00 44.35 C
ATOM 8 O4' C A1240 36.546 0.352 7.989 1.00 44.87 O
ATOM 9 C3' C A1240 36.061 1.587 9.907 1.00 44.27 C
ATOM 10 O3' C A1240 36.592 2.259 11.021 1.00 43.88 O
ATOM 11 C2' C A1240 35.869 2.494 8.717 1.00 44.76 C
ATOM 12 O2' C A1240 37.012 3.300 8.555 1.00 44.77 O
ATOM 13 C1' C A1240 35.816 1.478 7.571 1.00 45.13 C
ATOM 14 N1 C A1240 34.421 1.058 7.272 1.00 45.33 N
ATOM 15 C2 C A1240 33.608 1.884 6.484 1.00 45.73 C
ATOM 16 O2 C A1240 34.091 2.910 6.034 1.00 45.91 O
ATOM 17 N3 C A1240 32.326 1.569 6.208 1.00 45.94 N
ATOM 18 C4 C A1240 31.821 0.466 6.684 1.00 45.76 C
ATOM 19 N4 C A1240 30.568 0.219 6.389 1.00 45.98 N
ATOM 20 C5 C A1240 32.604 -0.415 7.488 1.00 45.35 C
ATOM 21 C6 C A1240 33.884 -0.095 7.771 1.00 45.14 C
ATOM 22 P C A1241 35.634 2.864 12.176 1.00 41.99 P
ATOM 23 OP1 C A1241 36.511 3.577 13.121 1.00 41.65 O
ATOM 24 OP2 C A1241 34.793 1.738 12.682 1.00 41.82 O
ATOM 25 O5' C A1241 34.738 3.916 11.407 1.00 42.38 O
TER
ATOM 1 O3' U B1152 22.910 6.708 0.379 1.00 67.42 O
ATOM 2 P G B1153 23.991 6.702 1.531 1.00 56.55 P
ATOM 3 OP1 G B1153 24.029 5.294 2.049 1.00 56.22 O
ATOM 4 OP2 G B1153 23.625 7.834 2.469 1.00 56.31 O
ATOM 5 O5' G B1153 25.351 7.050 0.756 1.00 56.72 O
ATOM 6 C5' G B1153 25.731 8.401 0.579 1.00 56.86 C
ATOM 7 C4' G B1153 27.008 8.732 1.299 1.00 56.43 C
ATOM 8 O4' G B1153 26.958 8.293 2.677 1.00 55.83 O
ATOM 9 C3' G B1153 28.251 8.067 0.768 1.00 56.43 C
ATOM 10 O3' G B1153 28.706 8.669 -0.410 1.00 56.92 O
ATOM 11 C2' G B1153 29.206 8.201 1.940 1.00 55.85 C
ATOM 12 O2' G B1153 29.618 9.539 2.068 1.00 55.88 O
ATOM 13 C1' G B1153 28.268 7.922 3.100 1.00 55.47 C
ATOM 14 N9 G B1153 28.265 6.502 3.485 1.00 55.20 N
ATOM 15 C8 G B1153 27.168 5.712 3.409 1.00 55.30 C
ATOM 16 N7 G B1153 27.386 4.503 3.816 1.00 55.02 N
ATOM 17 C5 G B1153 28.713 4.465 4.197 1.00 54.72 C
ATOM 18 C6 G B1153 29.495 3.399 4.713 1.00 54.36 C
ATOM 19 O6 G B1153 29.213 2.241 4.963 1.00 54.23 O
ATOM 20 N1 G B1153 30.774 3.794 4.958 1.00 54.15 N
ATOM 21 C2 G B1153 31.248 5.043 4.730 1.00 54.27 C
ATOM 22 N2 G B1153 32.531 5.223 5.029 1.00 54.04 N
ATOM 23 N3 G B1153 30.532 6.051 4.255 1.00 54.61 N
ATOM 24 C4 G B1153 29.263 5.707 3.999 1.00 54.82 C
ATOM 25 P U B1154 28.658 7.846 -1.776 1.00 50.90 P
ATOM 26 OP1 U B1154 28.745 8.837 -2.891 1.00 51.46 O
ATOM 27 OP2 U B1154 27.476 6.938 -1.709 1.00 50.94 O
ATOM 28 O5' U B1154 30.011 6.983 -1.709 1.00 50.64 O
TER
Atoms:
C2: (33.608,1.884,6.484)
OP1: (36.544,-3.428,11.253)
OP2: (34.141,-3.257,10.416)
C4: (31.821,0.466,6.684)
O5': (35.747,-1.361,10.081)
C3': (36.061,1.587,9.907)
C1': (35.816,1.478,7.571)
O4': (36.546,0.352,7.989)
C5': (37.022,-0.771,10.060)
P: (35.578,-2.932,10.243)
O2: (34.091,2.910,6.034)
C4': (37.006,0.544,9.349)
C2': (35.869,2.494,8.717)
O2': (37.012,3.300,8.555)
N1: (34.421,1.058,7.272)
N3: (32.326,1.569,6.208)
N4: (30.568,0.219,6.389)
C6: (33.884,-0.095,7.771)
C5: (32.604,-0.415,7.488)
O3': (36.592,2.259,11.021)
OP1: (36.544,-3.428,11.253)
OP2: (34.141,-3.257,10.416)
C4: (31.821,0.466,6.684)
O5': (35.747,-1.361,10.081)
C3': (36.061,1.587,9.907)
C1': (35.816,1.478,7.571)
O4': (36.546,0.352,7.989)
C5': (37.022,-0.771,10.060)
P: (35.578,-2.932,10.243)
O2: (34.091,2.910,6.034)
C4': (37.006,0.544,9.349)
C2': (35.869,2.494,8.717)
O2': (37.012,3.300,8.555)
N1: (34.421,1.058,7.272)
N3: (32.326,1.569,6.208)
N4: (30.568,0.219,6.389)
C6: (33.884,-0.095,7.771)
C5: (32.604,-0.415,7.488)
O3': (36.592,2.259,11.021)
OP1: (24.029,5.294,2.049)
OP2: (23.625,7.834,2.469)
C3': (28.251,8.067,0.768)
C1': (28.268,7.922,3.100)
C5': (25.731,8.401,0.579)
O6: (29.213,2.241,4.963)
O4': (26.958,8.293,2.677)
C8: (27.168,5.712,3.409)
C2: (31.248,5.043,4.730)
C6: (29.495,3.399,4.713)
C5: (28.713,4.465,4.197)
C4: (29.263,5.707,3.999)
P: (23.991,6.702,1.531)
C4': (27.008,8.732,1.299)
C2': (29.206,8.201,1.940)
O2': (29.618,9.539,2.068)
N1: (30.774,3.794,4.958)
N2: (32.531,5.223,5.029)
N3: (30.532,6.051,4.255)
N7: (27.386,4.503,3.816)
N9: (28.265,6.502,3.485)
O5': (25.351,7.050,0.756)
O3': (28.706,8.669,-0.410)
OP2: (23.625,7.834,2.469)
C3': (28.251,8.067,0.768)
C1': (28.268,7.922,3.100)
C5': (25.731,8.401,0.579)
O6: (29.213,2.241,4.963)
O4': (26.958,8.293,2.677)
C8: (27.168,5.712,3.409)
C2: (31.248,5.043,4.730)
C6: (29.495,3.399,4.713)
C5: (28.713,4.465,4.197)
C4: (29.263,5.707,3.999)
P: (23.991,6.702,1.531)
C4': (27.008,8.732,1.299)
C2': (29.206,8.201,1.940)
O2': (29.618,9.539,2.068)
N1: (30.774,3.794,4.958)
N2: (32.531,5.223,5.029)
N3: (30.532,6.051,4.255)
N7: (27.386,4.503,3.816)
N9: (28.265,6.502,3.485)
O5': (25.351,7.050,0.756)
O3': (28.706,8.669,-0.410)
Image (generated by PyMOL):