Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8N:A1280:A1253
Extra
PDB:
ATOM 1 O3' C A1279 -169.343 54.968 2.484 1.00 55.73 O
ATOM 2 P C A1280 -169.632 53.581 3.231 1.00 66.56 P
ATOM 3 OP1 C A1280 -170.882 53.763 4.008 1.00 66.56 O
ATOM 4 OP2 C A1280 -168.396 53.207 3.953 1.00 66.56 O
ATOM 5 O5' C A1280 -169.889 52.569 2.031 1.00 66.56 O
ATOM 6 C5' C A1280 -171.214 52.240 1.651 1.00 66.56 C
ATOM 7 C4' C A1280 -171.267 51.002 0.800 1.00 66.56 C
ATOM 8 O4' C A1280 -170.702 51.277 -0.504 1.00 66.56 O
ATOM 9 C3' C A1280 -170.476 49.807 1.302 1.00 66.56 C
ATOM 10 O3' C A1280 -171.158 49.083 2.304 1.00 66.56 O
ATOM 11 C2' C A1280 -170.246 49.010 0.029 1.00 66.56 C
ATOM 12 O2' C A1280 -171.413 48.282 -0.327 1.00 66.56 O
ATOM 13 C1' C A1280 -170.036 50.132 -0.990 1.00 66.56 C
ATOM 14 N1 C A1280 -168.599 50.469 -1.177 1.00 66.87 N
ATOM 15 C2 C A1280 -167.762 49.513 -1.768 1.00 66.87 C
ATOM 16 O2 C A1280 -168.242 48.414 -2.104 1.00 66.87 O
ATOM 17 N3 C A1280 -166.455 49.811 -1.951 1.00 66.87 N
ATOM 18 C4 C A1280 -165.982 51.001 -1.579 1.00 66.87 C
ATOM 19 N4 C A1280 -164.686 51.241 -1.793 1.00 66.87 N
ATOM 20 C5 C A1280 -166.813 51.996 -0.978 1.00 66.87 C
ATOM 21 C6 C A1280 -168.104 51.695 -0.800 1.00 66.87 C
ATOM 22 P U A1281 -170.353 48.474 3.551 1.00 52.35 P
ATOM 23 OP1 U A1281 -171.364 47.944 4.502 1.00 52.35 O
ATOM 24 OP2 U A1281 -169.401 49.529 4.025 1.00 52.35 O
ATOM 25 O5' U A1281 -169.558 47.265 2.889 1.00 52.35 O
TER
ATOM 1 O3' A B1252 -158.119 44.414 -7.631 1.00 34.48 O
ATOM 2 P G B1253 -158.485 45.338 -8.865 1.00 47.84 P
ATOM 3 OP1 G B1253 -157.867 44.728 -10.064 1.00 47.84 O
ATOM 4 OP2 G B1253 -158.106 46.720 -8.488 1.00 47.84 O
ATOM 5 O5' G B1253 -160.071 45.207 -8.939 1.00 47.84 O
ATOM 6 C5' G B1253 -160.698 44.014 -9.422 1.00 47.84 C
ATOM 7 C4' G B1253 -161.958 43.688 -8.639 1.00 47.84 C
ATOM 8 O4' G B1253 -161.692 43.869 -7.224 1.00 47.84 O
ATOM 9 C3' G B1253 -163.180 44.567 -8.925 1.00 47.84 C
ATOM 10 O3' G B1253 -163.982 44.086 -10.006 1.00 47.84 O
ATOM 11 C2' G B1253 -163.919 44.591 -7.590 1.00 47.84 C
ATOM 12 O2' G B1253 -164.759 43.464 -7.446 1.00 47.84 O
ATOM 13 C1' G B1253 -162.786 44.472 -6.585 1.00 47.84 C
ATOM 14 N9 G B1253 -162.369 45.780 -6.084 1.00 48.17 N
ATOM 15 C8 G B1253 -161.171 46.436 -6.235 1.00 48.17 C
ATOM 16 N7 G B1253 -161.171 47.602 -5.640 1.00 48.17 N
ATOM 17 C5 G B1253 -162.446 47.702 -5.080 1.00 48.17 C
ATOM 18 C6 G B1253 -163.055 48.731 -4.315 1.00 48.17 C
ATOM 19 O6 G B1253 -162.577 49.815 -3.960 1.00 48.17 O
ATOM 20 N1 G B1253 -164.363 48.395 -3.960 1.00 48.17 N
ATOM 21 C2 G B1253 -165.007 47.225 -4.290 1.00 48.17 C
ATOM 22 N2 G B1253 -166.262 47.100 -3.839 1.00 48.17 N
ATOM 23 N3 G B1253 -164.458 46.255 -5.000 1.00 48.17 N
ATOM 24 C4 G B1253 -163.193 46.573 -5.349 1.00 48.17 C
ATOM 25 P A B1254 -163.438 44.129 -11.525 1.00 62.64 P
ATOM 26 OP1 A B1254 -162.373 43.097 -11.642 1.00 62.64 O
ATOM 27 OP2 A B1254 -163.100 45.543 -11.825 1.00 62.64 O
ATOM 28 O5' A B1254 -164.711 43.686 -12.378 1.00 62.64 O
TER
ATOM 2 P C A1280 -169.632 53.581 3.231 1.00 66.56 P
ATOM 3 OP1 C A1280 -170.882 53.763 4.008 1.00 66.56 O
ATOM 4 OP2 C A1280 -168.396 53.207 3.953 1.00 66.56 O
ATOM 5 O5' C A1280 -169.889 52.569 2.031 1.00 66.56 O
ATOM 6 C5' C A1280 -171.214 52.240 1.651 1.00 66.56 C
ATOM 7 C4' C A1280 -171.267 51.002 0.800 1.00 66.56 C
ATOM 8 O4' C A1280 -170.702 51.277 -0.504 1.00 66.56 O
ATOM 9 C3' C A1280 -170.476 49.807 1.302 1.00 66.56 C
ATOM 10 O3' C A1280 -171.158 49.083 2.304 1.00 66.56 O
ATOM 11 C2' C A1280 -170.246 49.010 0.029 1.00 66.56 C
ATOM 12 O2' C A1280 -171.413 48.282 -0.327 1.00 66.56 O
ATOM 13 C1' C A1280 -170.036 50.132 -0.990 1.00 66.56 C
ATOM 14 N1 C A1280 -168.599 50.469 -1.177 1.00 66.87 N
ATOM 15 C2 C A1280 -167.762 49.513 -1.768 1.00 66.87 C
ATOM 16 O2 C A1280 -168.242 48.414 -2.104 1.00 66.87 O
ATOM 17 N3 C A1280 -166.455 49.811 -1.951 1.00 66.87 N
ATOM 18 C4 C A1280 -165.982 51.001 -1.579 1.00 66.87 C
ATOM 19 N4 C A1280 -164.686 51.241 -1.793 1.00 66.87 N
ATOM 20 C5 C A1280 -166.813 51.996 -0.978 1.00 66.87 C
ATOM 21 C6 C A1280 -168.104 51.695 -0.800 1.00 66.87 C
ATOM 22 P U A1281 -170.353 48.474 3.551 1.00 52.35 P
ATOM 23 OP1 U A1281 -171.364 47.944 4.502 1.00 52.35 O
ATOM 24 OP2 U A1281 -169.401 49.529 4.025 1.00 52.35 O
ATOM 25 O5' U A1281 -169.558 47.265 2.889 1.00 52.35 O
TER
ATOM 1 O3' A B1252 -158.119 44.414 -7.631 1.00 34.48 O
ATOM 2 P G B1253 -158.485 45.338 -8.865 1.00 47.84 P
ATOM 3 OP1 G B1253 -157.867 44.728 -10.064 1.00 47.84 O
ATOM 4 OP2 G B1253 -158.106 46.720 -8.488 1.00 47.84 O
ATOM 5 O5' G B1253 -160.071 45.207 -8.939 1.00 47.84 O
ATOM 6 C5' G B1253 -160.698 44.014 -9.422 1.00 47.84 C
ATOM 7 C4' G B1253 -161.958 43.688 -8.639 1.00 47.84 C
ATOM 8 O4' G B1253 -161.692 43.869 -7.224 1.00 47.84 O
ATOM 9 C3' G B1253 -163.180 44.567 -8.925 1.00 47.84 C
ATOM 10 O3' G B1253 -163.982 44.086 -10.006 1.00 47.84 O
ATOM 11 C2' G B1253 -163.919 44.591 -7.590 1.00 47.84 C
ATOM 12 O2' G B1253 -164.759 43.464 -7.446 1.00 47.84 O
ATOM 13 C1' G B1253 -162.786 44.472 -6.585 1.00 47.84 C
ATOM 14 N9 G B1253 -162.369 45.780 -6.084 1.00 48.17 N
ATOM 15 C8 G B1253 -161.171 46.436 -6.235 1.00 48.17 C
ATOM 16 N7 G B1253 -161.171 47.602 -5.640 1.00 48.17 N
ATOM 17 C5 G B1253 -162.446 47.702 -5.080 1.00 48.17 C
ATOM 18 C6 G B1253 -163.055 48.731 -4.315 1.00 48.17 C
ATOM 19 O6 G B1253 -162.577 49.815 -3.960 1.00 48.17 O
ATOM 20 N1 G B1253 -164.363 48.395 -3.960 1.00 48.17 N
ATOM 21 C2 G B1253 -165.007 47.225 -4.290 1.00 48.17 C
ATOM 22 N2 G B1253 -166.262 47.100 -3.839 1.00 48.17 N
ATOM 23 N3 G B1253 -164.458 46.255 -5.000 1.00 48.17 N
ATOM 24 C4 G B1253 -163.193 46.573 -5.349 1.00 48.17 C
ATOM 25 P A B1254 -163.438 44.129 -11.525 1.00 62.64 P
ATOM 26 OP1 A B1254 -162.373 43.097 -11.642 1.00 62.64 O
ATOM 27 OP2 A B1254 -163.100 45.543 -11.825 1.00 62.64 O
ATOM 28 O5' A B1254 -164.711 43.686 -12.378 1.00 62.64 O
TER
Atoms:
C2: (-167.762,49.513,-1.768)
OP1: (-170.882,53.763,4.008)
OP2: (-168.396,53.207,3.953)
C4: (-165.982,51.001,-1.579)
O5': (-169.889,52.569,2.031)
C3': (-170.476,49.807,1.302)
C1': (-170.036,50.132,-0.990)
O4': (-170.702,51.277,-0.504)
C5': (-171.214,52.240,1.651)
P: (-169.632,53.581,3.231)
O2: (-168.242,48.414,-2.104)
C4': (-171.267,51.002,0.800)
C2': (-170.246,49.010,0.029)
O2': (-171.413,48.282,-0.327)
N1: (-168.599,50.469,-1.177)
N3: (-166.455,49.811,-1.951)
N4: (-164.686,51.241,-1.793)
C6: (-168.104,51.695,-0.800)
C5: (-166.813,51.996,-0.978)
O3': (-171.158,49.083,2.304)
OP1: (-170.882,53.763,4.008)
OP2: (-168.396,53.207,3.953)
C4: (-165.982,51.001,-1.579)
O5': (-169.889,52.569,2.031)
C3': (-170.476,49.807,1.302)
C1': (-170.036,50.132,-0.990)
O4': (-170.702,51.277,-0.504)
C5': (-171.214,52.240,1.651)
P: (-169.632,53.581,3.231)
O2: (-168.242,48.414,-2.104)
C4': (-171.267,51.002,0.800)
C2': (-170.246,49.010,0.029)
O2': (-171.413,48.282,-0.327)
N1: (-168.599,50.469,-1.177)
N3: (-166.455,49.811,-1.951)
N4: (-164.686,51.241,-1.793)
C6: (-168.104,51.695,-0.800)
C5: (-166.813,51.996,-0.978)
O3': (-171.158,49.083,2.304)
OP1: (-157.867,44.728,-10.064)
OP2: (-158.106,46.720,-8.488)
C3': (-163.180,44.567,-8.925)
C1': (-162.786,44.472,-6.585)
C5': (-160.698,44.014,-9.422)
O6: (-162.577,49.815,-3.960)
O4': (-161.692,43.869,-7.224)
C8: (-161.171,46.436,-6.235)
C2: (-165.007,47.225,-4.290)
C6: (-163.055,48.731,-4.315)
C5: (-162.446,47.702,-5.080)
C4: (-163.193,46.573,-5.349)
P: (-158.485,45.338,-8.865)
C4': (-161.958,43.688,-8.639)
C2': (-163.919,44.591,-7.590)
O2': (-164.759,43.464,-7.446)
N1: (-164.363,48.395,-3.960)
N2: (-166.262,47.100,-3.839)
N3: (-164.458,46.255,-5.000)
N7: (-161.171,47.602,-5.640)
N9: (-162.369,45.780,-6.084)
O5': (-160.071,45.207,-8.939)
O3': (-163.982,44.086,-10.006)
OP2: (-158.106,46.720,-8.488)
C3': (-163.180,44.567,-8.925)
C1': (-162.786,44.472,-6.585)
C5': (-160.698,44.014,-9.422)
O6: (-162.577,49.815,-3.960)
O4': (-161.692,43.869,-7.224)
C8: (-161.171,46.436,-6.235)
C2: (-165.007,47.225,-4.290)
C6: (-163.055,48.731,-4.315)
C5: (-162.446,47.702,-5.080)
C4: (-163.193,46.573,-5.349)
P: (-158.485,45.338,-8.865)
C4': (-161.958,43.688,-8.639)
C2': (-163.919,44.591,-7.590)
O2': (-164.759,43.464,-7.446)
N1: (-164.363,48.395,-3.960)
N2: (-166.262,47.100,-3.839)
N3: (-164.458,46.255,-5.000)
N7: (-161.171,47.602,-5.640)
N9: (-162.369,45.780,-6.084)
O5': (-160.071,45.207,-8.939)
O3': (-163.982,44.086,-10.006)
Image (generated by PyMOL):