Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3K1V:A25:A6
Extra
PDB:
ATOM 1 O3' A A 24 -24.148 -17.193 18.810 1.00 47.23 O
ATOM 2 P A A 25 -23.538 -18.319 17.834 1.00 45.16 P
ATOM 3 OP1 A A 25 -24.503 -19.445 17.858 1.00 53.77 O
ATOM 4 OP2 A A 25 -22.116 -18.567 18.187 1.00 56.33 O
ATOM 5 O5' A A 25 -23.612 -17.651 16.391 1.00 39.74 O
ATOM 6 C5' A A 25 -22.722 -18.031 15.347 1.00 35.98 C
ATOM 7 C4' A A 25 -22.897 -17.105 14.166 1.00 34.76 C
ATOM 8 O4' A A 25 -22.692 -15.729 14.592 1.00 32.45 O
ATOM 9 C3' A A 25 -21.907 -17.271 13.029 1.00 35.74 C
ATOM 10 O3' A A 25 -22.276 -18.338 12.162 1.00 33.74 O
ATOM 11 C2' A A 25 -22.010 -15.924 12.324 1.00 36.90 C
ATOM 12 O2' A A 25 -23.142 -15.837 11.481 1.00 35.80 O
ATOM 13 C1' A A 25 -22.178 -14.970 13.510 1.00 36.49 C
ATOM 14 N9 A A 25 -20.926 -14.335 13.924 1.00 35.81 N
ATOM 15 C8 A A 25 -20.144 -14.612 15.017 1.00 34.43 C
ATOM 16 N7 A A 25 -19.071 -13.858 15.104 1.00 38.02 N
ATOM 17 C5 A A 25 -19.153 -13.030 13.992 1.00 34.81 C
ATOM 18 C6 A A 25 -18.314 -12.004 13.501 1.00 34.43 C
ATOM 19 N6 A A 25 -17.178 -11.617 14.091 1.00 20.20 N
ATOM 20 N1 A A 25 -18.690 -11.381 12.361 1.00 37.82 N
ATOM 21 C2 A A 25 -19.825 -11.765 11.765 1.00 32.06 C
ATOM 22 N3 A A 25 -20.690 -12.706 12.125 1.00 32.41 N
ATOM 23 C4 A A 25 -20.292 -13.311 13.258 1.00 37.39 C
ATOM 24 P C A 26 -21.163 -19.008 11.214 1.00 36.27 P
ATOM 25 OP1 C A 26 -21.822 -20.012 10.336 1.00 39.66 O
ATOM 26 OP2 C A 26 -20.030 -19.420 12.080 1.00 32.85 O
ATOM 27 O5' C A 26 -20.655 -17.797 10.313 1.00 40.11 O
TER
ATOM 1 O3' U B 5 -13.440 -13.298 23.374 1.00 28.43 O
ATOM 2 P U B 6 -12.550 -14.413 22.643 1.00 26.79 P
ATOM 3 OP1 U B 6 -11.745 -15.109 23.679 1.00 31.12 O
ATOM 4 OP2 U B 6 -11.865 -13.756 21.500 1.00 24.64 O
ATOM 5 O5' U B 6 -13.636 -15.434 22.090 1.00 29.92 O
ATOM 6 C5' U B 6 -14.417 -16.207 22.995 1.00 31.81 C
ATOM 7 C4' U B 6 -15.487 -16.953 22.247 1.00 33.93 C
ATOM 8 O4' U B 6 -16.452 -16.007 21.718 1.00 28.50 O
ATOM 9 C3' U B 6 -14.996 -17.698 21.020 1.00 32.56 C
ATOM 10 O3' U B 6 -14.415 -18.954 21.360 1.00 25.88 O
ATOM 11 C2' U B 6 -16.275 -17.823 20.201 1.00 31.26 C
ATOM 12 O2' U B 6 -17.134 -18.853 20.648 1.00 34.52 O
ATOM 13 C1' U B 6 -16.933 -16.467 20.468 1.00 25.48 C
ATOM 14 N1 U B 6 -16.589 -15.475 19.441 1.00 24.80 N
ATOM 15 C2 U B 6 -17.482 -15.301 18.406 1.00 25.06 C
ATOM 16 O2 U B 6 -18.530 -15.920 18.325 1.00 25.36 O
ATOM 17 N3 U B 6 -17.101 -14.380 17.460 1.00 21.16 N
ATOM 18 C4 U B 6 -15.940 -13.640 17.443 1.00 24.20 C
ATOM 19 O4 U B 6 -15.730 -12.872 16.504 1.00 16.84 O
ATOM 20 C5 U B 6 -15.064 -13.875 18.554 1.00 14.90 C
ATOM 21 C6 U B 6 -15.414 -14.758 19.494 1.00 22.20 C
ATOM 22 P C B 7 -13.310 -19.597 20.392 1.00 30.55 P
ATOM 23 OP1 C B 7 -13.790 -19.397 19.004 1.00 29.28 O
ATOM 24 OP2 C B 7 -13.017 -20.966 20.878 1.00 34.13 O
ATOM 25 O5' C B 7 -12.001 -18.705 20.599 1.00 29.86 O
TER
ATOM 2 P A A 25 -23.538 -18.319 17.834 1.00 45.16 P
ATOM 3 OP1 A A 25 -24.503 -19.445 17.858 1.00 53.77 O
ATOM 4 OP2 A A 25 -22.116 -18.567 18.187 1.00 56.33 O
ATOM 5 O5' A A 25 -23.612 -17.651 16.391 1.00 39.74 O
ATOM 6 C5' A A 25 -22.722 -18.031 15.347 1.00 35.98 C
ATOM 7 C4' A A 25 -22.897 -17.105 14.166 1.00 34.76 C
ATOM 8 O4' A A 25 -22.692 -15.729 14.592 1.00 32.45 O
ATOM 9 C3' A A 25 -21.907 -17.271 13.029 1.00 35.74 C
ATOM 10 O3' A A 25 -22.276 -18.338 12.162 1.00 33.74 O
ATOM 11 C2' A A 25 -22.010 -15.924 12.324 1.00 36.90 C
ATOM 12 O2' A A 25 -23.142 -15.837 11.481 1.00 35.80 O
ATOM 13 C1' A A 25 -22.178 -14.970 13.510 1.00 36.49 C
ATOM 14 N9 A A 25 -20.926 -14.335 13.924 1.00 35.81 N
ATOM 15 C8 A A 25 -20.144 -14.612 15.017 1.00 34.43 C
ATOM 16 N7 A A 25 -19.071 -13.858 15.104 1.00 38.02 N
ATOM 17 C5 A A 25 -19.153 -13.030 13.992 1.00 34.81 C
ATOM 18 C6 A A 25 -18.314 -12.004 13.501 1.00 34.43 C
ATOM 19 N6 A A 25 -17.178 -11.617 14.091 1.00 20.20 N
ATOM 20 N1 A A 25 -18.690 -11.381 12.361 1.00 37.82 N
ATOM 21 C2 A A 25 -19.825 -11.765 11.765 1.00 32.06 C
ATOM 22 N3 A A 25 -20.690 -12.706 12.125 1.00 32.41 N
ATOM 23 C4 A A 25 -20.292 -13.311 13.258 1.00 37.39 C
ATOM 24 P C A 26 -21.163 -19.008 11.214 1.00 36.27 P
ATOM 25 OP1 C A 26 -21.822 -20.012 10.336 1.00 39.66 O
ATOM 26 OP2 C A 26 -20.030 -19.420 12.080 1.00 32.85 O
ATOM 27 O5' C A 26 -20.655 -17.797 10.313 1.00 40.11 O
TER
ATOM 1 O3' U B 5 -13.440 -13.298 23.374 1.00 28.43 O
ATOM 2 P U B 6 -12.550 -14.413 22.643 1.00 26.79 P
ATOM 3 OP1 U B 6 -11.745 -15.109 23.679 1.00 31.12 O
ATOM 4 OP2 U B 6 -11.865 -13.756 21.500 1.00 24.64 O
ATOM 5 O5' U B 6 -13.636 -15.434 22.090 1.00 29.92 O
ATOM 6 C5' U B 6 -14.417 -16.207 22.995 1.00 31.81 C
ATOM 7 C4' U B 6 -15.487 -16.953 22.247 1.00 33.93 C
ATOM 8 O4' U B 6 -16.452 -16.007 21.718 1.00 28.50 O
ATOM 9 C3' U B 6 -14.996 -17.698 21.020 1.00 32.56 C
ATOM 10 O3' U B 6 -14.415 -18.954 21.360 1.00 25.88 O
ATOM 11 C2' U B 6 -16.275 -17.823 20.201 1.00 31.26 C
ATOM 12 O2' U B 6 -17.134 -18.853 20.648 1.00 34.52 O
ATOM 13 C1' U B 6 -16.933 -16.467 20.468 1.00 25.48 C
ATOM 14 N1 U B 6 -16.589 -15.475 19.441 1.00 24.80 N
ATOM 15 C2 U B 6 -17.482 -15.301 18.406 1.00 25.06 C
ATOM 16 O2 U B 6 -18.530 -15.920 18.325 1.00 25.36 O
ATOM 17 N3 U B 6 -17.101 -14.380 17.460 1.00 21.16 N
ATOM 18 C4 U B 6 -15.940 -13.640 17.443 1.00 24.20 C
ATOM 19 O4 U B 6 -15.730 -12.872 16.504 1.00 16.84 O
ATOM 20 C5 U B 6 -15.064 -13.875 18.554 1.00 14.90 C
ATOM 21 C6 U B 6 -15.414 -14.758 19.494 1.00 22.20 C
ATOM 22 P C B 7 -13.310 -19.597 20.392 1.00 30.55 P
ATOM 23 OP1 C B 7 -13.790 -19.397 19.004 1.00 29.28 O
ATOM 24 OP2 C B 7 -13.017 -20.966 20.878 1.00 34.13 O
ATOM 25 O5' C B 7 -12.001 -18.705 20.599 1.00 29.86 O
TER
Atoms:
OP1: (-24.503,-19.445,17.858)
OP2: (-22.116,-18.567,18.187)
C3': (-21.907,-17.271,13.029)
C1': (-22.178,-14.970,13.510)
C5': (-22.722,-18.031,15.347)
O4': (-22.692,-15.729,14.592)
C8: (-20.144,-14.612,15.017)
O2': (-23.142,-15.837,11.481)
C6: (-18.314,-12.004,13.501)
C5: (-19.153,-13.030,13.992)
C4: (-20.292,-13.311,13.258)
P: (-23.538,-18.319,17.834)
C4': (-22.897,-17.105,14.166)
C2': (-22.010,-15.924,12.324)
C2: (-19.825,-11.765,11.765)
N1: (-18.690,-11.381,12.361)
N3: (-20.690,-12.706,12.125)
N6: (-17.178,-11.617,14.091)
N7: (-19.071,-13.858,15.104)
N9: (-20.926,-14.335,13.924)
O5': (-23.612,-17.651,16.391)
O3': (-22.276,-18.338,12.162)
OP2: (-22.116,-18.567,18.187)
C3': (-21.907,-17.271,13.029)
C1': (-22.178,-14.970,13.510)
C5': (-22.722,-18.031,15.347)
O4': (-22.692,-15.729,14.592)
C8: (-20.144,-14.612,15.017)
O2': (-23.142,-15.837,11.481)
C6: (-18.314,-12.004,13.501)
C5: (-19.153,-13.030,13.992)
C4: (-20.292,-13.311,13.258)
P: (-23.538,-18.319,17.834)
C4': (-22.897,-17.105,14.166)
C2': (-22.010,-15.924,12.324)
C2: (-19.825,-11.765,11.765)
N1: (-18.690,-11.381,12.361)
N3: (-20.690,-12.706,12.125)
N6: (-17.178,-11.617,14.091)
N7: (-19.071,-13.858,15.104)
N9: (-20.926,-14.335,13.924)
O5': (-23.612,-17.651,16.391)
O3': (-22.276,-18.338,12.162)
C4: (-15.940,-13.640,17.443)
N3: (-17.101,-14.380,17.460)
OP1: (-11.745,-15.109,23.679)
OP2: (-11.865,-13.756,21.500)
C2: (-17.482,-15.301,18.406)
C1': (-16.933,-16.467,20.468)
C3': (-14.996,-17.698,21.020)
O5': (-13.636,-15.434,22.090)
O4': (-16.452,-16.007,21.718)
C5': (-14.417,-16.207,22.995)
P: (-12.550,-14.413,22.643)
C4': (-15.487,-16.953,22.247)
C2': (-16.275,-17.823,20.201)
O2': (-17.134,-18.853,20.648)
N1: (-16.589,-15.475,19.441)
O4: (-15.730,-12.872,16.504)
O2: (-18.530,-15.920,18.325)
C6: (-15.414,-14.758,19.494)
C5: (-15.064,-13.875,18.554)
O3': (-14.415,-18.954,21.360)
N3: (-17.101,-14.380,17.460)
OP1: (-11.745,-15.109,23.679)
OP2: (-11.865,-13.756,21.500)
C2: (-17.482,-15.301,18.406)
C1': (-16.933,-16.467,20.468)
C3': (-14.996,-17.698,21.020)
O5': (-13.636,-15.434,22.090)
O4': (-16.452,-16.007,21.718)
C5': (-14.417,-16.207,22.995)
P: (-12.550,-14.413,22.643)
C4': (-15.487,-16.953,22.247)
C2': (-16.275,-17.823,20.201)
O2': (-17.134,-18.853,20.648)
N1: (-16.589,-15.475,19.441)
O4: (-15.730,-12.872,16.504)
O2: (-18.530,-15.920,18.325)
C6: (-15.414,-14.758,19.494)
C5: (-15.064,-13.875,18.554)
O3': (-14.415,-18.954,21.360)
Image (generated by PyMOL):