Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8N:A116:A117
Extra
PDB:
ATOM 1 O3' G A 115 -51.476 2.904 -51.413 1.00 15.65 O
ATOM 2 P U A 116 -51.707 3.779 -50.095 1.00 29.39 P
ATOM 3 OP1 U A 116 -51.192 2.995 -48.951 1.00 29.39 O
ATOM 4 OP2 U A 116 -53.125 4.215 -50.086 1.00 29.39 O
ATOM 5 O5' U A 116 -50.761 5.007 -50.362 1.00 29.39 O
ATOM 6 C5' U A 116 -49.473 4.797 -50.916 1.00 29.39 C
ATOM 7 C4' U A 116 -49.090 5.899 -51.860 1.00 29.39 C
ATOM 8 O4' U A 116 -49.985 5.913 -53.002 1.00 29.39 O
ATOM 9 C3' U A 116 -49.196 7.313 -51.314 1.00 29.39 C
ATOM 10 O3' U A 116 -48.134 7.663 -50.453 1.00 29.39 O
ATOM 11 C2' U A 116 -49.220 8.120 -52.585 1.00 29.39 C
ATOM 12 O2' U A 116 -47.920 8.189 -53.137 1.00 29.39 O
ATOM 13 C1' U A 116 -50.090 7.236 -53.482 1.00 29.39 C
ATOM 14 N1 U A 116 -51.506 7.661 -53.450 1.00 29.33 N
ATOM 15 C2 U A 116 -51.745 8.778 -54.218 1.00 29.33 C
ATOM 16 O2 U A 116 -50.873 9.332 -54.859 1.00 29.33 O
ATOM 17 N3 U A 116 -53.025 9.242 -54.226 1.00 29.33 N
ATOM 18 C4 U A 116 -54.078 8.723 -53.537 1.00 29.33 C
ATOM 19 O4 U A 116 -55.159 9.294 -53.677 1.00 29.33 O
ATOM 20 C5 U A 116 -53.765 7.566 -52.739 1.00 29.33 C
ATOM 21 C6 U A 116 -52.514 7.084 -52.718 1.00 29.33 C
ATOM 22 P A A 117 -48.415 7.918 -48.895 1.00 26.38 P
ATOM 23 OP1 A A 117 -47.335 7.238 -48.138 1.00 26.38 O
ATOM 24 OP2 A A 117 -49.819 7.538 -48.647 1.00 26.38 O
ATOM 25 O5' A A 117 -48.265 9.475 -48.755 1.00 26.38 O
TER
ATOM 1 O3' U B 116 -48.134 7.663 -50.453 1.00 29.39 O
ATOM 2 P A B 117 -48.415 7.918 -48.895 1.00 26.38 P
ATOM 3 OP1 A B 117 -47.335 7.238 -48.138 1.00 26.38 O
ATOM 4 OP2 A B 117 -49.819 7.538 -48.647 1.00 26.38 O
ATOM 5 O5' A B 117 -48.265 9.475 -48.755 1.00 26.38 O
ATOM 6 C5' A B 117 -49.314 10.298 -49.175 1.00 26.38 C
ATOM 7 C4' A B 117 -48.954 11.725 -49.050 1.00 26.38 C
ATOM 8 O4' A B 117 -50.116 12.510 -49.391 1.00 26.38 O
ATOM 9 C3' A B 117 -48.539 12.151 -47.657 1.00 26.38 C
ATOM 10 O3' A B 117 -47.573 13.202 -47.747 1.00 26.38 O
ATOM 11 C2' A B 117 -49.836 12.683 -47.064 1.00 26.38 C
ATOM 12 O2' A B 117 -49.659 13.649 -46.046 1.00 26.38 O
ATOM 13 C1' A B 117 -50.532 13.272 -48.290 1.00 26.38 C
ATOM 14 N9 A B 117 -51.976 13.182 -48.237 1.00 26.37 N
ATOM 15 C8 A B 117 -52.663 12.152 -47.687 1.00 26.37 C
ATOM 16 N7 A B 117 -53.952 12.305 -47.768 1.00 26.37 N
ATOM 17 C5 A B 117 -54.114 13.507 -48.431 1.00 26.37 C
ATOM 18 C6 A B 117 -55.270 14.203 -48.816 1.00 26.37 C
ATOM 19 N6 A B 117 -56.514 13.754 -48.574 1.00 26.37 N
ATOM 20 N1 A B 117 -55.088 15.378 -49.465 1.00 26.37 N
ATOM 21 C2 A B 117 -53.830 15.791 -49.696 1.00 26.37 C
ATOM 22 N3 A B 117 -52.671 15.208 -49.376 1.00 26.37 N
ATOM 23 C4 A B 117 -52.894 14.055 -48.735 1.00 26.37 C
ATOM 24 P A B 118 -46.066 12.969 -47.228 1.00 55.29 P
ATOM 25 OP1 A B 118 -46.097 11.773 -46.345 1.00 55.29 O
ATOM 26 OP2 A B 118 -45.603 14.271 -46.660 1.00 55.29 O
ATOM 27 O5' A B 118 -45.255 12.625 -48.580 1.00 55.29 O
TER
ATOM 2 P U A 116 -51.707 3.779 -50.095 1.00 29.39 P
ATOM 3 OP1 U A 116 -51.192 2.995 -48.951 1.00 29.39 O
ATOM 4 OP2 U A 116 -53.125 4.215 -50.086 1.00 29.39 O
ATOM 5 O5' U A 116 -50.761 5.007 -50.362 1.00 29.39 O
ATOM 6 C5' U A 116 -49.473 4.797 -50.916 1.00 29.39 C
ATOM 7 C4' U A 116 -49.090 5.899 -51.860 1.00 29.39 C
ATOM 8 O4' U A 116 -49.985 5.913 -53.002 1.00 29.39 O
ATOM 9 C3' U A 116 -49.196 7.313 -51.314 1.00 29.39 C
ATOM 10 O3' U A 116 -48.134 7.663 -50.453 1.00 29.39 O
ATOM 11 C2' U A 116 -49.220 8.120 -52.585 1.00 29.39 C
ATOM 12 O2' U A 116 -47.920 8.189 -53.137 1.00 29.39 O
ATOM 13 C1' U A 116 -50.090 7.236 -53.482 1.00 29.39 C
ATOM 14 N1 U A 116 -51.506 7.661 -53.450 1.00 29.33 N
ATOM 15 C2 U A 116 -51.745 8.778 -54.218 1.00 29.33 C
ATOM 16 O2 U A 116 -50.873 9.332 -54.859 1.00 29.33 O
ATOM 17 N3 U A 116 -53.025 9.242 -54.226 1.00 29.33 N
ATOM 18 C4 U A 116 -54.078 8.723 -53.537 1.00 29.33 C
ATOM 19 O4 U A 116 -55.159 9.294 -53.677 1.00 29.33 O
ATOM 20 C5 U A 116 -53.765 7.566 -52.739 1.00 29.33 C
ATOM 21 C6 U A 116 -52.514 7.084 -52.718 1.00 29.33 C
ATOM 22 P A A 117 -48.415 7.918 -48.895 1.00 26.38 P
ATOM 23 OP1 A A 117 -47.335 7.238 -48.138 1.00 26.38 O
ATOM 24 OP2 A A 117 -49.819 7.538 -48.647 1.00 26.38 O
ATOM 25 O5' A A 117 -48.265 9.475 -48.755 1.00 26.38 O
TER
ATOM 1 O3' U B 116 -48.134 7.663 -50.453 1.00 29.39 O
ATOM 2 P A B 117 -48.415 7.918 -48.895 1.00 26.38 P
ATOM 3 OP1 A B 117 -47.335 7.238 -48.138 1.00 26.38 O
ATOM 4 OP2 A B 117 -49.819 7.538 -48.647 1.00 26.38 O
ATOM 5 O5' A B 117 -48.265 9.475 -48.755 1.00 26.38 O
ATOM 6 C5' A B 117 -49.314 10.298 -49.175 1.00 26.38 C
ATOM 7 C4' A B 117 -48.954 11.725 -49.050 1.00 26.38 C
ATOM 8 O4' A B 117 -50.116 12.510 -49.391 1.00 26.38 O
ATOM 9 C3' A B 117 -48.539 12.151 -47.657 1.00 26.38 C
ATOM 10 O3' A B 117 -47.573 13.202 -47.747 1.00 26.38 O
ATOM 11 C2' A B 117 -49.836 12.683 -47.064 1.00 26.38 C
ATOM 12 O2' A B 117 -49.659 13.649 -46.046 1.00 26.38 O
ATOM 13 C1' A B 117 -50.532 13.272 -48.290 1.00 26.38 C
ATOM 14 N9 A B 117 -51.976 13.182 -48.237 1.00 26.37 N
ATOM 15 C8 A B 117 -52.663 12.152 -47.687 1.00 26.37 C
ATOM 16 N7 A B 117 -53.952 12.305 -47.768 1.00 26.37 N
ATOM 17 C5 A B 117 -54.114 13.507 -48.431 1.00 26.37 C
ATOM 18 C6 A B 117 -55.270 14.203 -48.816 1.00 26.37 C
ATOM 19 N6 A B 117 -56.514 13.754 -48.574 1.00 26.37 N
ATOM 20 N1 A B 117 -55.088 15.378 -49.465 1.00 26.37 N
ATOM 21 C2 A B 117 -53.830 15.791 -49.696 1.00 26.37 C
ATOM 22 N3 A B 117 -52.671 15.208 -49.376 1.00 26.37 N
ATOM 23 C4 A B 117 -52.894 14.055 -48.735 1.00 26.37 C
ATOM 24 P A B 118 -46.066 12.969 -47.228 1.00 55.29 P
ATOM 25 OP1 A B 118 -46.097 11.773 -46.345 1.00 55.29 O
ATOM 26 OP2 A B 118 -45.603 14.271 -46.660 1.00 55.29 O
ATOM 27 O5' A B 118 -45.255 12.625 -48.580 1.00 55.29 O
TER
Atoms:
C4: (-54.078,8.723,-53.537)
N3: (-53.025,9.242,-54.226)
OP1: (-51.192,2.995,-48.951)
OP2: (-53.125,4.215,-50.086)
C2: (-51.745,8.778,-54.218)
C1': (-50.090,7.236,-53.482)
C3': (-49.196,7.313,-51.314)
O5': (-50.761,5.007,-50.362)
O4': (-49.985,5.913,-53.002)
C5': (-49.473,4.797,-50.916)
P: (-51.707,3.779,-50.095)
C4': (-49.090,5.899,-51.860)
C2': (-49.220,8.120,-52.585)
O2': (-47.920,8.189,-53.137)
N1: (-51.506,7.661,-53.450)
O4: (-55.159,9.294,-53.677)
O2: (-50.873,9.332,-54.859)
C6: (-52.514,7.084,-52.718)
C5: (-53.765,7.566,-52.739)
O3': (-48.134,7.663,-50.453)
N3: (-53.025,9.242,-54.226)
OP1: (-51.192,2.995,-48.951)
OP2: (-53.125,4.215,-50.086)
C2: (-51.745,8.778,-54.218)
C1': (-50.090,7.236,-53.482)
C3': (-49.196,7.313,-51.314)
O5': (-50.761,5.007,-50.362)
O4': (-49.985,5.913,-53.002)
C5': (-49.473,4.797,-50.916)
P: (-51.707,3.779,-50.095)
C4': (-49.090,5.899,-51.860)
C2': (-49.220,8.120,-52.585)
O2': (-47.920,8.189,-53.137)
N1: (-51.506,7.661,-53.450)
O4: (-55.159,9.294,-53.677)
O2: (-50.873,9.332,-54.859)
C6: (-52.514,7.084,-52.718)
C5: (-53.765,7.566,-52.739)
O3': (-48.134,7.663,-50.453)
OP1: (-47.335,7.238,-48.138)
OP2: (-49.819,7.538,-48.647)
C3': (-48.539,12.151,-47.657)
C1': (-50.532,13.272,-48.290)
C5': (-49.314,10.298,-49.175)
O4': (-50.116,12.510,-49.391)
C8: (-52.663,12.152,-47.687)
O2': (-49.659,13.649,-46.046)
C6: (-55.270,14.203,-48.816)
C5: (-54.114,13.507,-48.431)
C4: (-52.894,14.055,-48.735)
P: (-48.415,7.918,-48.895)
C4': (-48.954,11.725,-49.050)
C2': (-49.836,12.683,-47.064)
C2: (-53.830,15.791,-49.696)
N1: (-55.088,15.378,-49.465)
N3: (-52.671,15.208,-49.376)
N6: (-56.514,13.754,-48.574)
N7: (-53.952,12.305,-47.768)
N9: (-51.976,13.182,-48.237)
O5': (-48.265,9.475,-48.755)
O3': (-47.573,13.202,-47.747)
OP2: (-49.819,7.538,-48.647)
C3': (-48.539,12.151,-47.657)
C1': (-50.532,13.272,-48.290)
C5': (-49.314,10.298,-49.175)
O4': (-50.116,12.510,-49.391)
C8: (-52.663,12.152,-47.687)
O2': (-49.659,13.649,-46.046)
C6: (-55.270,14.203,-48.816)
C5: (-54.114,13.507,-48.431)
C4: (-52.894,14.055,-48.735)
P: (-48.415,7.918,-48.895)
C4': (-48.954,11.725,-49.050)
C2': (-49.836,12.683,-47.064)
C2: (-53.830,15.791,-49.696)
N1: (-55.088,15.378,-49.465)
N3: (-52.671,15.208,-49.376)
N6: (-56.514,13.754,-48.574)
N7: (-53.952,12.305,-47.768)
N9: (-51.976,13.182,-48.237)
O5': (-48.265,9.475,-48.755)
O3': (-47.573,13.202,-47.747)
Image (generated by PyMOL):