Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8O:A116:A117
Extra
PDB:
ATOM 1 O3' G A 115 -12.773 62.949 113.618 1.00 10.47 O
ATOM 2 P U A 116 -12.846 64.224 112.627 1.00 17.06 P
ATOM 3 OP1 U A 116 -12.575 65.427 113.451 1.00 17.06 O
ATOM 4 OP2 U A 116 -14.133 64.138 111.879 1.00 17.06 O
ATOM 5 O5' U A 116 -11.629 63.969 111.641 1.00 17.06 O
ATOM 6 C5' U A 116 -10.361 63.587 112.152 1.00 17.06 C
ATOM 7 C4' U A 116 -9.729 62.497 111.327 1.00 17.06 C
ATOM 8 O4' U A 116 -10.660 61.405 111.135 1.00 17.06 O
ATOM 9 C3' U A 116 -9.319 62.877 109.919 1.00 17.06 C
ATOM 10 O3' U A 116 -8.086 63.564 109.891 1.00 17.06 O
ATOM 11 C2' U A 116 -9.245 61.532 109.231 1.00 17.06 C
ATOM 12 O2' U A 116 -7.998 60.911 109.511 1.00 17.06 O
ATOM 13 C1' U A 116 -10.356 60.743 109.933 1.00 17.06 C
ATOM 14 N1 U A 116 -11.579 60.633 109.116 1.00 16.95 N
ATOM 15 C2 U A 116 -11.516 59.960 107.922 1.00 16.95 C
ATOM 16 O2 U A 116 -10.487 59.483 107.510 1.00 16.95 O
ATOM 17 N3 U A 116 -12.678 59.876 107.198 1.00 16.95 N
ATOM 18 C4 U A 116 -13.916 60.379 107.539 1.00 16.95 C
ATOM 19 O4 U A 116 -14.891 60.225 106.788 1.00 16.95 O
ATOM 20 C5 U A 116 -13.912 61.049 108.799 1.00 16.95 C
ATOM 21 C6 U A 116 -12.777 61.135 109.523 1.00 16.95 C
ATOM 22 P A A 117 -8.014 65.126 109.526 1.00 29.73 P
ATOM 23 OP1 A A 117 -7.041 65.735 110.466 1.00 29.73 O
ATOM 24 OP2 A A 117 -9.414 65.644 109.487 1.00 29.73 O
ATOM 25 O5' A A 117 -7.412 65.123 108.067 1.00 29.73 O
TER
ATOM 1 O3' U B 116 -8.086 63.564 109.891 1.00 17.06 O
ATOM 2 P A B 117 -8.014 65.126 109.526 1.00 29.73 P
ATOM 3 OP1 A B 117 -7.041 65.735 110.466 1.00 29.73 O
ATOM 4 OP2 A B 117 -9.414 65.644 109.487 1.00 29.73 O
ATOM 5 O5' A B 117 -7.412 65.123 108.067 1.00 29.73 O
ATOM 6 C5' A B 117 -8.272 65.073 106.957 1.00 29.73 C
ATOM 7 C4' A B 117 -7.523 65.244 105.679 1.00 29.73 C
ATOM 8 O4' A B 117 -8.373 64.794 104.603 1.00 29.73 O
ATOM 9 C3' A B 117 -7.140 66.679 105.351 1.00 29.73 C
ATOM 10 O3' A B 117 -5.941 66.702 104.567 1.00 29.73 O
ATOM 11 C2' A B 117 -8.317 67.155 104.509 1.00 29.73 C
ATOM 12 O2' A B 117 -8.011 68.193 103.590 1.00 29.73 O
ATOM 13 C1' A B 117 -8.745 65.878 103.786 1.00 29.73 C
ATOM 14 N9 A B 117 -10.184 65.806 103.562 1.00 29.06 N
ATOM 15 C8 A B 117 -11.136 66.431 104.324 1.00 29.06 C
ATOM 16 N7 A B 117 -12.352 66.237 103.900 1.00 29.06 N
ATOM 17 C5 A B 117 -12.174 65.444 102.779 1.00 29.06 C
ATOM 18 C6 A B 117 -13.093 64.907 101.878 1.00 29.06 C
ATOM 19 N6 A B 117 -14.415 65.104 101.995 1.00 29.06 N
ATOM 20 N1 A B 117 -12.593 64.155 100.862 1.00 29.06 N
ATOM 21 C2 A B 117 -11.271 63.973 100.768 1.00 29.06 C
ATOM 22 N3 A B 117 -10.317 64.431 101.558 1.00 29.06 N
ATOM 23 C4 A B 117 -10.844 65.169 102.548 1.00 29.06 C
ATOM 24 P A B 118 -4.563 67.233 105.203 1.00 58.42 P
ATOM 25 OP1 A B 118 -4.752 68.669 105.503 1.00 58.42 O
ATOM 26 OP2 A B 118 -3.477 66.836 104.270 1.00 58.42 O
ATOM 27 O5' A B 118 -4.457 66.398 106.570 1.00 58.42 O
TER
ATOM 2 P U A 116 -12.846 64.224 112.627 1.00 17.06 P
ATOM 3 OP1 U A 116 -12.575 65.427 113.451 1.00 17.06 O
ATOM 4 OP2 U A 116 -14.133 64.138 111.879 1.00 17.06 O
ATOM 5 O5' U A 116 -11.629 63.969 111.641 1.00 17.06 O
ATOM 6 C5' U A 116 -10.361 63.587 112.152 1.00 17.06 C
ATOM 7 C4' U A 116 -9.729 62.497 111.327 1.00 17.06 C
ATOM 8 O4' U A 116 -10.660 61.405 111.135 1.00 17.06 O
ATOM 9 C3' U A 116 -9.319 62.877 109.919 1.00 17.06 C
ATOM 10 O3' U A 116 -8.086 63.564 109.891 1.00 17.06 O
ATOM 11 C2' U A 116 -9.245 61.532 109.231 1.00 17.06 C
ATOM 12 O2' U A 116 -7.998 60.911 109.511 1.00 17.06 O
ATOM 13 C1' U A 116 -10.356 60.743 109.933 1.00 17.06 C
ATOM 14 N1 U A 116 -11.579 60.633 109.116 1.00 16.95 N
ATOM 15 C2 U A 116 -11.516 59.960 107.922 1.00 16.95 C
ATOM 16 O2 U A 116 -10.487 59.483 107.510 1.00 16.95 O
ATOM 17 N3 U A 116 -12.678 59.876 107.198 1.00 16.95 N
ATOM 18 C4 U A 116 -13.916 60.379 107.539 1.00 16.95 C
ATOM 19 O4 U A 116 -14.891 60.225 106.788 1.00 16.95 O
ATOM 20 C5 U A 116 -13.912 61.049 108.799 1.00 16.95 C
ATOM 21 C6 U A 116 -12.777 61.135 109.523 1.00 16.95 C
ATOM 22 P A A 117 -8.014 65.126 109.526 1.00 29.73 P
ATOM 23 OP1 A A 117 -7.041 65.735 110.466 1.00 29.73 O
ATOM 24 OP2 A A 117 -9.414 65.644 109.487 1.00 29.73 O
ATOM 25 O5' A A 117 -7.412 65.123 108.067 1.00 29.73 O
TER
ATOM 1 O3' U B 116 -8.086 63.564 109.891 1.00 17.06 O
ATOM 2 P A B 117 -8.014 65.126 109.526 1.00 29.73 P
ATOM 3 OP1 A B 117 -7.041 65.735 110.466 1.00 29.73 O
ATOM 4 OP2 A B 117 -9.414 65.644 109.487 1.00 29.73 O
ATOM 5 O5' A B 117 -7.412 65.123 108.067 1.00 29.73 O
ATOM 6 C5' A B 117 -8.272 65.073 106.957 1.00 29.73 C
ATOM 7 C4' A B 117 -7.523 65.244 105.679 1.00 29.73 C
ATOM 8 O4' A B 117 -8.373 64.794 104.603 1.00 29.73 O
ATOM 9 C3' A B 117 -7.140 66.679 105.351 1.00 29.73 C
ATOM 10 O3' A B 117 -5.941 66.702 104.567 1.00 29.73 O
ATOM 11 C2' A B 117 -8.317 67.155 104.509 1.00 29.73 C
ATOM 12 O2' A B 117 -8.011 68.193 103.590 1.00 29.73 O
ATOM 13 C1' A B 117 -8.745 65.878 103.786 1.00 29.73 C
ATOM 14 N9 A B 117 -10.184 65.806 103.562 1.00 29.06 N
ATOM 15 C8 A B 117 -11.136 66.431 104.324 1.00 29.06 C
ATOM 16 N7 A B 117 -12.352 66.237 103.900 1.00 29.06 N
ATOM 17 C5 A B 117 -12.174 65.444 102.779 1.00 29.06 C
ATOM 18 C6 A B 117 -13.093 64.907 101.878 1.00 29.06 C
ATOM 19 N6 A B 117 -14.415 65.104 101.995 1.00 29.06 N
ATOM 20 N1 A B 117 -12.593 64.155 100.862 1.00 29.06 N
ATOM 21 C2 A B 117 -11.271 63.973 100.768 1.00 29.06 C
ATOM 22 N3 A B 117 -10.317 64.431 101.558 1.00 29.06 N
ATOM 23 C4 A B 117 -10.844 65.169 102.548 1.00 29.06 C
ATOM 24 P A B 118 -4.563 67.233 105.203 1.00 58.42 P
ATOM 25 OP1 A B 118 -4.752 68.669 105.503 1.00 58.42 O
ATOM 26 OP2 A B 118 -3.477 66.836 104.270 1.00 58.42 O
ATOM 27 O5' A B 118 -4.457 66.398 106.570 1.00 58.42 O
TER
Atoms:
C4: (-13.916,60.379,107.539)
N3: (-12.678,59.876,107.198)
OP1: (-12.575,65.427,113.451)
OP2: (-14.133,64.138,111.879)
C2: (-11.516,59.960,107.922)
C1': (-10.356,60.743,109.933)
C3': (-9.319,62.877,109.919)
O5': (-11.629,63.969,111.641)
O4': (-10.660,61.405,111.135)
C5': (-10.361,63.587,112.152)
P: (-12.846,64.224,112.627)
C4': (-9.729,62.497,111.327)
C2': (-9.245,61.532,109.231)
O2': (-7.998,60.911,109.511)
N1: (-11.579,60.633,109.116)
O4: (-14.891,60.225,106.788)
O2: (-10.487,59.483,107.510)
C6: (-12.777,61.135,109.523)
C5: (-13.912,61.049,108.799)
O3': (-8.086,63.564,109.891)
N3: (-12.678,59.876,107.198)
OP1: (-12.575,65.427,113.451)
OP2: (-14.133,64.138,111.879)
C2: (-11.516,59.960,107.922)
C1': (-10.356,60.743,109.933)
C3': (-9.319,62.877,109.919)
O5': (-11.629,63.969,111.641)
O4': (-10.660,61.405,111.135)
C5': (-10.361,63.587,112.152)
P: (-12.846,64.224,112.627)
C4': (-9.729,62.497,111.327)
C2': (-9.245,61.532,109.231)
O2': (-7.998,60.911,109.511)
N1: (-11.579,60.633,109.116)
O4: (-14.891,60.225,106.788)
O2: (-10.487,59.483,107.510)
C6: (-12.777,61.135,109.523)
C5: (-13.912,61.049,108.799)
O3': (-8.086,63.564,109.891)
OP1: (-7.041,65.735,110.466)
OP2: (-9.414,65.644,109.487)
C3': (-7.140,66.679,105.351)
C1': (-8.745,65.878,103.786)
C5': (-8.272,65.073,106.957)
O4': (-8.373,64.794,104.603)
C8: (-11.136,66.431,104.324)
O2': (-8.011,68.193,103.590)
C6: (-13.093,64.907,101.878)
C5: (-12.174,65.444,102.779)
C4: (-10.844,65.169,102.548)
P: (-8.014,65.126,109.526)
C4': (-7.523,65.244,105.679)
C2': (-8.317,67.155,104.509)
C2: (-11.271,63.973,100.768)
N1: (-12.593,64.155,100.862)
N3: (-10.317,64.431,101.558)
N6: (-14.415,65.104,101.995)
N7: (-12.352,66.237,103.900)
N9: (-10.184,65.806,103.562)
O5': (-7.412,65.123,108.067)
O3': (-5.941,66.702,104.567)
OP2: (-9.414,65.644,109.487)
C3': (-7.140,66.679,105.351)
C1': (-8.745,65.878,103.786)
C5': (-8.272,65.073,106.957)
O4': (-8.373,64.794,104.603)
C8: (-11.136,66.431,104.324)
O2': (-8.011,68.193,103.590)
C6: (-13.093,64.907,101.878)
C5: (-12.174,65.444,102.779)
C4: (-10.844,65.169,102.548)
P: (-8.014,65.126,109.526)
C4': (-7.523,65.244,105.679)
C2': (-8.317,67.155,104.509)
C2: (-11.271,63.973,100.768)
N1: (-12.593,64.155,100.862)
N3: (-10.317,64.431,101.558)
N6: (-14.415,65.104,101.995)
N7: (-12.352,66.237,103.900)
N9: (-10.184,65.806,103.562)
O5': (-7.412,65.123,108.067)
O3': (-5.941,66.702,104.567)
Image (generated by PyMOL):