Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11963:11964
Extra
PDB:
ATOM 1 O3' G A1962 -2.404 -16.870 111.667 1.00 46.04 O
ATOM 2 P C A1963 -3.540 -17.298 112.734 1.00 43.01 P
ATOM 3 OP1 C A1963 -3.532 -18.778 112.826 1.00 43.07 O
ATOM 4 OP2 C A1963 -4.799 -16.609 112.333 1.00 43.11 O
ATOM 5 O5' C A1963 -2.996 -16.673 114.060 1.00 43.25 O
ATOM 6 C5' C A1963 -1.713 -16.980 114.506 1.00 43.17 C
ATOM 7 C4' C A1963 -1.253 -15.968 115.499 1.00 43.35 C
ATOM 8 O4' C A1963 -1.113 -14.677 114.862 1.00 43.14 O
ATOM 9 C3' C A1963 -2.184 -15.694 116.661 1.00 43.83 C
ATOM 10 O3' C A1963 -2.118 -16.731 117.627 1.00 44.12 O
ATOM 11 C2' C A1963 -1.637 -14.358 117.142 1.00 43.88 C
ATOM 12 O2' C A1963 -0.392 -14.545 117.798 1.00 43.87 O
ATOM 13 C1' C A1963 -1.332 -13.671 115.813 1.00 43.44 C
ATOM 14 N1 C A1963 -2.432 -12.833 115.355 1.00 43.50 N
ATOM 15 C2 C A1963 -2.467 -11.511 115.858 1.00 43.66 C
ATOM 16 O2 C A1963 -1.613 -11.134 116.669 1.00 43.76 O
ATOM 17 N3 C A1963 -3.468 -10.717 115.460 1.00 43.73 N
ATOM 18 C4 C A1963 -4.348 -11.230 114.600 1.00 43.64 C
ATOM 19 N4 C A1963 -5.314 -10.447 114.235 1.00 43.73 N
ATOM 20 C5 C A1963 -4.317 -12.543 114.071 1.00 43.47 C
ATOM 21 C6 C A1963 -3.338 -13.347 114.470 1.00 43.40 C
ATOM 22 P G A1964 -3.159 -16.844 118.853 1.00 48.16 P
ATOM 23 OP1 G A1964 -2.808 -18.074 119.609 1.00 48.35 O
ATOM 24 OP2 G A1964 -4.540 -16.718 118.279 1.00 48.22 O
ATOM 25 O5' G A1964 -2.804 -15.586 119.758 1.00 48.36 O
TER
ATOM 1 O3' C B1963 -2.118 -16.731 117.627 1.00 44.12 O
ATOM 2 P G B1964 -3.159 -16.844 118.853 1.00 48.16 P
ATOM 3 OP1 G B1964 -2.808 -18.074 119.609 1.00 48.35 O
ATOM 4 OP2 G B1964 -4.540 -16.718 118.279 1.00 48.22 O
ATOM 5 O5' G B1964 -2.804 -15.586 119.758 1.00 48.36 O
ATOM 6 C5' G B1964 -1.792 -15.701 120.736 1.00 48.50 C
ATOM 7 C4' G B1964 -2.280 -15.356 122.119 1.00 49.02 C
ATOM 8 O4' G B1964 -3.070 -14.145 122.073 1.00 49.13 O
ATOM 9 C3' G B1964 -3.136 -16.410 122.811 1.00 49.39 C
ATOM 10 O3' G B1964 -2.712 -16.564 124.153 1.00 49.77 O
ATOM 11 C2' G B1964 -4.522 -15.797 122.824 1.00 49.62 C
ATOM 12 O2' G B1964 -5.299 -16.200 123.929 1.00 50.12 O
ATOM 13 C1' G B1964 -4.205 -14.309 122.878 1.00 49.58 C
ATOM 14 N9 G B1964 -5.276 -13.451 122.365 1.00 49.60 N
ATOM 15 C8 G B1964 -6.296 -13.858 121.572 1.00 49.52 C
ATOM 16 N7 G B1964 -7.110 -12.894 121.291 1.00 49.59 N
ATOM 17 C5 G B1964 -6.618 -11.791 121.940 1.00 49.72 C
ATOM 18 C6 G B1964 -7.098 -10.456 121.999 1.00 49.86 C
ATOM 19 O6 G B1964 -8.101 -9.946 121.470 1.00 49.89 O
ATOM 20 N1 G B1964 -6.269 -9.647 122.774 1.00 49.98 N
ATOM 21 C2 G B1964 -5.138 -10.051 123.415 1.00 49.98 C
ATOM 22 N2 G B1964 -4.488 -9.111 124.121 1.00 50.13 N
ATOM 23 N3 G B1964 -4.719 -11.312 123.358 1.00 49.85 N
ATOM 24 C4 G B1964 -5.484 -12.121 122.610 1.00 49.73 C
ATOM 25 P A B1965 -1.572 -17.624 124.520 1.00 49.30 P
ATOM 26 OP1 A B1965 -1.767 -18.824 123.674 1.00 49.08 O
ATOM 27 OP2 A B1965 -1.589 -17.782 125.993 1.00 49.81 O
ATOM 28 O5' A B1965 -0.259 -16.842 124.063 1.00 48.94 O
TER
ATOM 2 P C A1963 -3.540 -17.298 112.734 1.00 43.01 P
ATOM 3 OP1 C A1963 -3.532 -18.778 112.826 1.00 43.07 O
ATOM 4 OP2 C A1963 -4.799 -16.609 112.333 1.00 43.11 O
ATOM 5 O5' C A1963 -2.996 -16.673 114.060 1.00 43.25 O
ATOM 6 C5' C A1963 -1.713 -16.980 114.506 1.00 43.17 C
ATOM 7 C4' C A1963 -1.253 -15.968 115.499 1.00 43.35 C
ATOM 8 O4' C A1963 -1.113 -14.677 114.862 1.00 43.14 O
ATOM 9 C3' C A1963 -2.184 -15.694 116.661 1.00 43.83 C
ATOM 10 O3' C A1963 -2.118 -16.731 117.627 1.00 44.12 O
ATOM 11 C2' C A1963 -1.637 -14.358 117.142 1.00 43.88 C
ATOM 12 O2' C A1963 -0.392 -14.545 117.798 1.00 43.87 O
ATOM 13 C1' C A1963 -1.332 -13.671 115.813 1.00 43.44 C
ATOM 14 N1 C A1963 -2.432 -12.833 115.355 1.00 43.50 N
ATOM 15 C2 C A1963 -2.467 -11.511 115.858 1.00 43.66 C
ATOM 16 O2 C A1963 -1.613 -11.134 116.669 1.00 43.76 O
ATOM 17 N3 C A1963 -3.468 -10.717 115.460 1.00 43.73 N
ATOM 18 C4 C A1963 -4.348 -11.230 114.600 1.00 43.64 C
ATOM 19 N4 C A1963 -5.314 -10.447 114.235 1.00 43.73 N
ATOM 20 C5 C A1963 -4.317 -12.543 114.071 1.00 43.47 C
ATOM 21 C6 C A1963 -3.338 -13.347 114.470 1.00 43.40 C
ATOM 22 P G A1964 -3.159 -16.844 118.853 1.00 48.16 P
ATOM 23 OP1 G A1964 -2.808 -18.074 119.609 1.00 48.35 O
ATOM 24 OP2 G A1964 -4.540 -16.718 118.279 1.00 48.22 O
ATOM 25 O5' G A1964 -2.804 -15.586 119.758 1.00 48.36 O
TER
ATOM 1 O3' C B1963 -2.118 -16.731 117.627 1.00 44.12 O
ATOM 2 P G B1964 -3.159 -16.844 118.853 1.00 48.16 P
ATOM 3 OP1 G B1964 -2.808 -18.074 119.609 1.00 48.35 O
ATOM 4 OP2 G B1964 -4.540 -16.718 118.279 1.00 48.22 O
ATOM 5 O5' G B1964 -2.804 -15.586 119.758 1.00 48.36 O
ATOM 6 C5' G B1964 -1.792 -15.701 120.736 1.00 48.50 C
ATOM 7 C4' G B1964 -2.280 -15.356 122.119 1.00 49.02 C
ATOM 8 O4' G B1964 -3.070 -14.145 122.073 1.00 49.13 O
ATOM 9 C3' G B1964 -3.136 -16.410 122.811 1.00 49.39 C
ATOM 10 O3' G B1964 -2.712 -16.564 124.153 1.00 49.77 O
ATOM 11 C2' G B1964 -4.522 -15.797 122.824 1.00 49.62 C
ATOM 12 O2' G B1964 -5.299 -16.200 123.929 1.00 50.12 O
ATOM 13 C1' G B1964 -4.205 -14.309 122.878 1.00 49.58 C
ATOM 14 N9 G B1964 -5.276 -13.451 122.365 1.00 49.60 N
ATOM 15 C8 G B1964 -6.296 -13.858 121.572 1.00 49.52 C
ATOM 16 N7 G B1964 -7.110 -12.894 121.291 1.00 49.59 N
ATOM 17 C5 G B1964 -6.618 -11.791 121.940 1.00 49.72 C
ATOM 18 C6 G B1964 -7.098 -10.456 121.999 1.00 49.86 C
ATOM 19 O6 G B1964 -8.101 -9.946 121.470 1.00 49.89 O
ATOM 20 N1 G B1964 -6.269 -9.647 122.774 1.00 49.98 N
ATOM 21 C2 G B1964 -5.138 -10.051 123.415 1.00 49.98 C
ATOM 22 N2 G B1964 -4.488 -9.111 124.121 1.00 50.13 N
ATOM 23 N3 G B1964 -4.719 -11.312 123.358 1.00 49.85 N
ATOM 24 C4 G B1964 -5.484 -12.121 122.610 1.00 49.73 C
ATOM 25 P A B1965 -1.572 -17.624 124.520 1.00 49.30 P
ATOM 26 OP1 A B1965 -1.767 -18.824 123.674 1.00 49.08 O
ATOM 27 OP2 A B1965 -1.589 -17.782 125.993 1.00 49.81 O
ATOM 28 O5' A B1965 -0.259 -16.842 124.063 1.00 48.94 O
TER
Atoms:
C2: (-2.467,-11.511,115.858)
OP1: (-3.532,-18.778,112.826)
OP2: (-4.799,-16.609,112.333)
C4: (-4.348,-11.230,114.600)
O5': (-2.996,-16.673,114.060)
C3': (-2.184,-15.694,116.661)
C1': (-1.332,-13.671,115.813)
O4': (-1.113,-14.677,114.862)
C5': (-1.713,-16.980,114.506)
P: (-3.540,-17.298,112.734)
O2: (-1.613,-11.134,116.669)
C4': (-1.253,-15.968,115.499)
C2': (-1.637,-14.358,117.142)
O2': (-0.392,-14.545,117.798)
N1: (-2.432,-12.833,115.355)
N3: (-3.468,-10.717,115.460)
N4: (-5.314,-10.447,114.235)
C6: (-3.338,-13.347,114.470)
C5: (-4.317,-12.543,114.071)
O3': (-2.118,-16.731,117.627)
OP1: (-3.532,-18.778,112.826)
OP2: (-4.799,-16.609,112.333)
C4: (-4.348,-11.230,114.600)
O5': (-2.996,-16.673,114.060)
C3': (-2.184,-15.694,116.661)
C1': (-1.332,-13.671,115.813)
O4': (-1.113,-14.677,114.862)
C5': (-1.713,-16.980,114.506)
P: (-3.540,-17.298,112.734)
O2: (-1.613,-11.134,116.669)
C4': (-1.253,-15.968,115.499)
C2': (-1.637,-14.358,117.142)
O2': (-0.392,-14.545,117.798)
N1: (-2.432,-12.833,115.355)
N3: (-3.468,-10.717,115.460)
N4: (-5.314,-10.447,114.235)
C6: (-3.338,-13.347,114.470)
C5: (-4.317,-12.543,114.071)
O3': (-2.118,-16.731,117.627)
OP1: (-2.808,-18.074,119.609)
OP2: (-4.540,-16.718,118.279)
C3': (-3.136,-16.410,122.811)
C1': (-4.205,-14.309,122.878)
C5': (-1.792,-15.701,120.736)
O6: (-8.101,-9.946,121.470)
O4': (-3.070,-14.145,122.073)
C8: (-6.296,-13.858,121.572)
C2: (-5.138,-10.051,123.415)
C6: (-7.098,-10.456,121.999)
C5: (-6.618,-11.791,121.940)
C4: (-5.484,-12.121,122.610)
P: (-3.159,-16.844,118.853)
C4': (-2.280,-15.356,122.119)
C2': (-4.522,-15.797,122.824)
O2': (-5.299,-16.200,123.929)
N1: (-6.269,-9.647,122.774)
N2: (-4.488,-9.111,124.121)
N3: (-4.719,-11.312,123.358)
N7: (-7.110,-12.894,121.291)
N9: (-5.276,-13.451,122.365)
O5': (-2.804,-15.586,119.758)
O3': (-2.712,-16.564,124.153)
OP2: (-4.540,-16.718,118.279)
C3': (-3.136,-16.410,122.811)
C1': (-4.205,-14.309,122.878)
C5': (-1.792,-15.701,120.736)
O6: (-8.101,-9.946,121.470)
O4': (-3.070,-14.145,122.073)
C8: (-6.296,-13.858,121.572)
C2: (-5.138,-10.051,123.415)
C6: (-7.098,-10.456,121.999)
C5: (-6.618,-11.791,121.940)
C4: (-5.484,-12.121,122.610)
P: (-3.159,-16.844,118.853)
C4': (-2.280,-15.356,122.119)
C2': (-4.522,-15.797,122.824)
O2': (-5.299,-16.200,123.929)
N1: (-6.269,-9.647,122.774)
N2: (-4.488,-9.111,124.121)
N3: (-4.719,-11.312,123.358)
N7: (-7.110,-12.894,121.291)
N9: (-5.276,-13.451,122.365)
O5': (-2.804,-15.586,119.758)
O3': (-2.712,-16.564,124.153)
Image (generated by PyMOL):