Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A59:A41
Extra
PDB:
ATOM 1 O3' C A 58 11.711 -4.525 17.062 1.00 78.87 O
ATOM 2 P C A 59 10.978 -4.109 18.410 1.00 80.83 P
ATOM 3 OP1 C A 59 10.686 -5.432 18.988 1.00 81.18 O
ATOM 4 OP2 C A 59 9.892 -3.111 18.241 1.00 79.24 O
ATOM 5 O5' C A 59 12.131 -3.322 19.212 1.00 83.64 O
ATOM 6 C5' C A 59 13.537 -3.696 19.188 1.00 86.09 C
ATOM 7 C4' C A 59 14.410 -2.808 20.086 1.00 87.73 C
ATOM 8 O4' C A 59 14.961 -1.673 19.358 1.00 88.24 O
ATOM 9 C3' C A 59 13.707 -2.210 21.301 1.00 88.09 C
ATOM 10 O3' C A 59 13.879 -3.084 22.406 1.00 88.81 O
ATOM 11 C2' C A 59 14.417 -0.884 21.518 1.00 87.90 C
ATOM 12 O2' C A 59 15.539 -1.037 22.360 1.00 89.46 O
ATOM 13 C1' C A 59 14.834 -0.486 20.113 1.00 87.66 C
ATOM 14 N1 C A 59 13.844 0.396 19.437 1.00 86.64 N
ATOM 15 C2 C A 59 14.074 1.778 19.349 1.00 87.72 C
ATOM 16 O2 C A 59 15.094 2.275 19.838 1.00 89.57 O
ATOM 17 N3 C A 59 13.160 2.559 18.721 1.00 86.65 N
ATOM 18 C4 C A 59 12.055 2.010 18.206 1.00 85.10 C
ATOM 19 N4 C A 59 11.176 2.806 17.596 1.00 83.76 N
ATOM 20 C5 C A 59 11.807 0.613 18.282 1.00 85.13 C
ATOM 21 C6 C A 59 12.713 -0.143 18.899 1.00 85.52 C
ATOM 22 P A A 60 13.096 -2.801 23.778 1.00 90.31 P
ATOM 23 OP1 A A 60 11.636 -2.973 23.535 1.00 88.00 O
ATOM 24 OP2 A A 60 13.567 -1.483 24.293 1.00 89.45 O
ATOM 25 O5' A A 60 13.648 -4.003 24.701 1.00 86.99 O
TER
ATOM 1 O3' C B 40 13.254 14.315 17.467 1.00125.36 O
ATOM 2 P G B 41 14.128 13.598 16.329 1.00124.83 P
ATOM 3 OP1 G B 41 14.589 14.678 15.426 1.00125.04 O
ATOM 4 OP2 G B 41 13.310 12.499 15.758 1.00125.40 O
ATOM 5 O5' G B 41 15.394 12.934 17.063 1.00121.05 O
ATOM 6 C5' G B 41 15.980 13.461 18.246 1.00118.37 C
ATOM 7 C4' G B 41 16.547 12.350 19.112 1.00116.64 C
ATOM 8 O4' G B 41 15.504 11.707 19.889 1.00115.84 O
ATOM 9 C3' G B 41 17.196 11.228 18.328 1.00115.15 C
ATOM 10 O3' G B 41 18.521 11.584 18.006 1.00113.17 O
ATOM 11 C2' G B 41 17.112 10.062 19.300 1.00115.55 C
ATOM 12 O2' G B 41 18.231 9.970 20.149 1.00115.80 O
ATOM 13 C1' G B 41 15.813 10.339 20.067 1.00116.07 C
ATOM 14 N9 G B 41 14.735 9.523 19.524 1.00116.50 N
ATOM 15 C8 G B 41 13.625 9.939 18.831 1.00116.29 C
ATOM 16 N7 G B 41 12.864 8.958 18.441 1.00116.55 N
ATOM 17 C5 G B 41 13.507 7.822 18.902 1.00116.50 C
ATOM 18 C6 G B 41 13.139 6.464 18.783 1.00117.05 C
ATOM 19 O6 G B 41 12.133 6.007 18.223 1.00116.88 O
ATOM 20 N1 G B 41 14.072 5.616 19.389 1.00117.46 N
ATOM 21 C2 G B 41 15.217 6.039 20.035 1.00117.45 C
ATOM 22 N2 G B 41 16.003 5.090 20.566 1.00117.67 N
ATOM 23 N3 G B 41 15.568 7.315 20.151 1.00116.70 N
ATOM 24 C4 G B 41 14.666 8.148 19.566 1.00116.55 C
ATOM 25 P G B 42 19.285 10.876 16.796 1.00111.57 P
ATOM 26 OP1 G B 42 20.684 11.376 16.831 1.00110.58 O
ATOM 27 OP2 G B 42 18.456 11.064 15.579 1.00110.86 O
ATOM 28 O5' G B 42 19.250 9.318 17.183 1.00108.93 O
TER
ATOM 2 P C A 59 10.978 -4.109 18.410 1.00 80.83 P
ATOM 3 OP1 C A 59 10.686 -5.432 18.988 1.00 81.18 O
ATOM 4 OP2 C A 59 9.892 -3.111 18.241 1.00 79.24 O
ATOM 5 O5' C A 59 12.131 -3.322 19.212 1.00 83.64 O
ATOM 6 C5' C A 59 13.537 -3.696 19.188 1.00 86.09 C
ATOM 7 C4' C A 59 14.410 -2.808 20.086 1.00 87.73 C
ATOM 8 O4' C A 59 14.961 -1.673 19.358 1.00 88.24 O
ATOM 9 C3' C A 59 13.707 -2.210 21.301 1.00 88.09 C
ATOM 10 O3' C A 59 13.879 -3.084 22.406 1.00 88.81 O
ATOM 11 C2' C A 59 14.417 -0.884 21.518 1.00 87.90 C
ATOM 12 O2' C A 59 15.539 -1.037 22.360 1.00 89.46 O
ATOM 13 C1' C A 59 14.834 -0.486 20.113 1.00 87.66 C
ATOM 14 N1 C A 59 13.844 0.396 19.437 1.00 86.64 N
ATOM 15 C2 C A 59 14.074 1.778 19.349 1.00 87.72 C
ATOM 16 O2 C A 59 15.094 2.275 19.838 1.00 89.57 O
ATOM 17 N3 C A 59 13.160 2.559 18.721 1.00 86.65 N
ATOM 18 C4 C A 59 12.055 2.010 18.206 1.00 85.10 C
ATOM 19 N4 C A 59 11.176 2.806 17.596 1.00 83.76 N
ATOM 20 C5 C A 59 11.807 0.613 18.282 1.00 85.13 C
ATOM 21 C6 C A 59 12.713 -0.143 18.899 1.00 85.52 C
ATOM 22 P A A 60 13.096 -2.801 23.778 1.00 90.31 P
ATOM 23 OP1 A A 60 11.636 -2.973 23.535 1.00 88.00 O
ATOM 24 OP2 A A 60 13.567 -1.483 24.293 1.00 89.45 O
ATOM 25 O5' A A 60 13.648 -4.003 24.701 1.00 86.99 O
TER
ATOM 1 O3' C B 40 13.254 14.315 17.467 1.00125.36 O
ATOM 2 P G B 41 14.128 13.598 16.329 1.00124.83 P
ATOM 3 OP1 G B 41 14.589 14.678 15.426 1.00125.04 O
ATOM 4 OP2 G B 41 13.310 12.499 15.758 1.00125.40 O
ATOM 5 O5' G B 41 15.394 12.934 17.063 1.00121.05 O
ATOM 6 C5' G B 41 15.980 13.461 18.246 1.00118.37 C
ATOM 7 C4' G B 41 16.547 12.350 19.112 1.00116.64 C
ATOM 8 O4' G B 41 15.504 11.707 19.889 1.00115.84 O
ATOM 9 C3' G B 41 17.196 11.228 18.328 1.00115.15 C
ATOM 10 O3' G B 41 18.521 11.584 18.006 1.00113.17 O
ATOM 11 C2' G B 41 17.112 10.062 19.300 1.00115.55 C
ATOM 12 O2' G B 41 18.231 9.970 20.149 1.00115.80 O
ATOM 13 C1' G B 41 15.813 10.339 20.067 1.00116.07 C
ATOM 14 N9 G B 41 14.735 9.523 19.524 1.00116.50 N
ATOM 15 C8 G B 41 13.625 9.939 18.831 1.00116.29 C
ATOM 16 N7 G B 41 12.864 8.958 18.441 1.00116.55 N
ATOM 17 C5 G B 41 13.507 7.822 18.902 1.00116.50 C
ATOM 18 C6 G B 41 13.139 6.464 18.783 1.00117.05 C
ATOM 19 O6 G B 41 12.133 6.007 18.223 1.00116.88 O
ATOM 20 N1 G B 41 14.072 5.616 19.389 1.00117.46 N
ATOM 21 C2 G B 41 15.217 6.039 20.035 1.00117.45 C
ATOM 22 N2 G B 41 16.003 5.090 20.566 1.00117.67 N
ATOM 23 N3 G B 41 15.568 7.315 20.151 1.00116.70 N
ATOM 24 C4 G B 41 14.666 8.148 19.566 1.00116.55 C
ATOM 25 P G B 42 19.285 10.876 16.796 1.00111.57 P
ATOM 26 OP1 G B 42 20.684 11.376 16.831 1.00110.58 O
ATOM 27 OP2 G B 42 18.456 11.064 15.579 1.00110.86 O
ATOM 28 O5' G B 42 19.250 9.318 17.183 1.00108.93 O
TER
Atoms:
C2: (14.074,1.778,19.349)
OP1: (10.686,-5.432,18.988)
OP2: (9.892,-3.111,18.241)
C4: (12.055,2.010,18.206)
O5': (12.131,-3.322,19.212)
C3': (13.707,-2.210,21.301)
C1': (14.834,-0.486,20.113)
O4': (14.961,-1.673,19.358)
C5': (13.537,-3.696,19.188)
P: (10.978,-4.109,18.410)
O2: (15.094,2.275,19.838)
C4': (14.410,-2.808,20.086)
C2': (14.417,-0.884,21.518)
O2': (15.539,-1.037,22.360)
N1: (13.844,0.396,19.437)
N3: (13.160,2.559,18.721)
N4: (11.176,2.806,17.596)
C6: (12.713,-0.143,18.899)
C5: (11.807,0.613,18.282)
O3': (13.879,-3.084,22.406)
OP1: (10.686,-5.432,18.988)
OP2: (9.892,-3.111,18.241)
C4: (12.055,2.010,18.206)
O5': (12.131,-3.322,19.212)
C3': (13.707,-2.210,21.301)
C1': (14.834,-0.486,20.113)
O4': (14.961,-1.673,19.358)
C5': (13.537,-3.696,19.188)
P: (10.978,-4.109,18.410)
O2: (15.094,2.275,19.838)
C4': (14.410,-2.808,20.086)
C2': (14.417,-0.884,21.518)
O2': (15.539,-1.037,22.360)
N1: (13.844,0.396,19.437)
N3: (13.160,2.559,18.721)
N4: (11.176,2.806,17.596)
C6: (12.713,-0.143,18.899)
C5: (11.807,0.613,18.282)
O3': (13.879,-3.084,22.406)
OP1: (14.589,14.678,15.426)
OP2: (13.310,12.499,15.758)
C3': (17.196,11.228,18.328)
C1': (15.813,10.339,20.067)
C5': (15.980,13.461,18.246)
O6: (12.133,6.007,18.223)
O4': (15.504,11.707,19.889)
C8: (13.625,9.939,18.831)
C2: (15.217,6.039,20.035)
C6: (13.139,6.464,18.783)
C5: (13.507,7.822,18.902)
C4: (14.666,8.148,19.566)
P: (14.128,13.598,16.329)
C4': (16.547,12.350,19.112)
C2': (17.112,10.062,19.300)
O2': (18.231,9.970,20.149)
N1: (14.072,5.616,19.389)
N2: (16.003,5.090,20.566)
N3: (15.568,7.315,20.151)
N7: (12.864,8.958,18.441)
N9: (14.735,9.523,19.524)
O5': (15.394,12.934,17.063)
O3': (18.521,11.584,18.006)
OP2: (13.310,12.499,15.758)
C3': (17.196,11.228,18.328)
C1': (15.813,10.339,20.067)
C5': (15.980,13.461,18.246)
O6: (12.133,6.007,18.223)
O4': (15.504,11.707,19.889)
C8: (13.625,9.939,18.831)
C2: (15.217,6.039,20.035)
C6: (13.139,6.464,18.783)
C5: (13.507,7.822,18.902)
C4: (14.666,8.148,19.566)
P: (14.128,13.598,16.329)
C4': (16.547,12.350,19.112)
C2': (17.112,10.062,19.300)
O2': (18.231,9.970,20.149)
N1: (14.072,5.616,19.389)
N2: (16.003,5.090,20.566)
N3: (15.568,7.315,20.151)
N7: (12.864,8.958,18.441)
N9: (14.735,9.523,19.524)
O5': (15.394,12.934,17.063)
O3': (18.521,11.584,18.006)
Image (generated by PyMOL):