Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YJY:D8:D9
Extra
PDB:
ATOM 1 O3' A A 7 13.171 -5.076 18.511 1.00 54.97 O
ATOM 2 P U A 8 11.652 -5.371 18.961 1.00 52.21 P
ATOM 3 OP1 U A 8 11.120 -6.392 18.030 1.00 43.07 O
ATOM 4 OP2 U A 8 10.936 -4.104 19.240 1.00 41.71 O
ATOM 5 O5' U A 8 11.764 -5.991 20.427 1.00 46.12 O
ATOM 6 C5' U A 8 10.572 -6.166 21.172 1.00 37.18 C
ATOM 7 C4' U A 8 10.557 -7.521 21.826 1.00 40.64 C
ATOM 8 O4' U A 8 11.320 -7.485 23.052 1.00 35.00 O
ATOM 9 C3' U A 8 9.188 -8.041 22.224 1.00 42.57 C
ATOM 10 O3' U A 8 8.598 -8.705 21.121 1.00 43.30 O
ATOM 11 C2' U A 8 9.470 -8.954 23.416 1.00 40.54 C
ATOM 12 O2' U A 8 9.706 -10.292 22.995 1.00 39.82 O
ATOM 13 C1' U A 8 10.788 -8.407 23.969 1.00 33.47 C
ATOM 14 N1 U A 8 10.814 -7.819 25.320 1.00 30.80 N
ATOM 15 C2 U A 8 11.251 -8.646 26.331 1.00 32.45 C
ATOM 16 O2 U A 8 11.578 -9.800 26.141 1.00 37.23 O
ATOM 17 N3 U A 8 11.289 -8.093 27.575 1.00 27.89 N
ATOM 18 C4 U A 8 10.948 -6.800 27.889 1.00 30.03 C
ATOM 19 O4 U A 8 11.042 -6.444 29.058 1.00 29.52 O
ATOM 20 C5 U A 8 10.509 -5.987 26.775 1.00 27.48 C
ATOM 21 C6 U A 8 10.463 -6.510 25.546 1.00 27.14 C
ATOM 22 P A A 9 7.082 -9.194 21.131 1.00 52.85 P
ATOM 23 OP1 A A 9 6.817 -9.916 19.866 1.00 51.90 O
ATOM 24 OP2 A A 9 6.222 -8.075 21.580 1.00 42.94 O
ATOM 25 O5' A A 9 7.044 -10.248 22.335 1.00 53.69 O
TER
ATOM 1 O3' U B 8 8.598 -8.705 21.121 1.00 43.30 O
ATOM 2 P A B 9 7.082 -9.194 21.131 1.00 52.85 P
ATOM 3 OP1 A B 9 6.817 -9.916 19.866 1.00 51.90 O
ATOM 4 OP2 A B 9 6.222 -8.075 21.580 1.00 42.94 O
ATOM 5 O5' A B 9 7.044 -10.248 22.335 1.00 53.69 O
ATOM 6 C5' A B 9 7.275 -11.642 22.158 1.00 43.90 C
ATOM 7 C4' A B 9 6.215 -12.394 22.913 1.00 45.71 C
ATOM 8 O4' A B 9 6.369 -12.136 24.328 1.00 43.59 O
ATOM 9 C3' A B 9 4.808 -11.944 22.549 1.00 48.62 C
ATOM 10 O3' A B 9 4.153 -12.914 21.748 1.00 46.96 O
ATOM 11 C2' A B 9 4.075 -11.662 23.854 1.00 39.60 C
ATOM 12 O2' A B 9 2.917 -12.470 23.967 1.00 44.30 O
ATOM 13 C1' A B 9 5.104 -12.011 24.932 1.00 36.03 C
ATOM 14 N9 A B 9 5.160 -11.066 26.063 1.00 37.17 N
ATOM 15 C8 A B 9 5.218 -9.709 26.060 1.00 34.24 C
ATOM 16 N7 A B 9 5.248 -9.206 27.275 1.00 37.62 N
ATOM 17 C5 A B 9 5.203 -10.300 28.129 1.00 36.17 C
ATOM 18 C6 A B 9 5.204 -10.462 29.544 1.00 38.47 C
ATOM 19 N6 A B 9 5.260 -9.465 30.437 1.00 30.10 N
ATOM 20 N1 A B 9 5.153 -11.718 30.033 1.00 35.09 N
ATOM 21 C2 A B 9 5.107 -12.739 29.177 1.00 33.44 C
ATOM 22 N3 A B 9 5.100 -12.712 27.850 1.00 34.35 N
ATOM 23 C4 A B 9 5.150 -11.454 27.384 1.00 36.30 C
TER
ATOM 2 P U A 8 11.652 -5.371 18.961 1.00 52.21 P
ATOM 3 OP1 U A 8 11.120 -6.392 18.030 1.00 43.07 O
ATOM 4 OP2 U A 8 10.936 -4.104 19.240 1.00 41.71 O
ATOM 5 O5' U A 8 11.764 -5.991 20.427 1.00 46.12 O
ATOM 6 C5' U A 8 10.572 -6.166 21.172 1.00 37.18 C
ATOM 7 C4' U A 8 10.557 -7.521 21.826 1.00 40.64 C
ATOM 8 O4' U A 8 11.320 -7.485 23.052 1.00 35.00 O
ATOM 9 C3' U A 8 9.188 -8.041 22.224 1.00 42.57 C
ATOM 10 O3' U A 8 8.598 -8.705 21.121 1.00 43.30 O
ATOM 11 C2' U A 8 9.470 -8.954 23.416 1.00 40.54 C
ATOM 12 O2' U A 8 9.706 -10.292 22.995 1.00 39.82 O
ATOM 13 C1' U A 8 10.788 -8.407 23.969 1.00 33.47 C
ATOM 14 N1 U A 8 10.814 -7.819 25.320 1.00 30.80 N
ATOM 15 C2 U A 8 11.251 -8.646 26.331 1.00 32.45 C
ATOM 16 O2 U A 8 11.578 -9.800 26.141 1.00 37.23 O
ATOM 17 N3 U A 8 11.289 -8.093 27.575 1.00 27.89 N
ATOM 18 C4 U A 8 10.948 -6.800 27.889 1.00 30.03 C
ATOM 19 O4 U A 8 11.042 -6.444 29.058 1.00 29.52 O
ATOM 20 C5 U A 8 10.509 -5.987 26.775 1.00 27.48 C
ATOM 21 C6 U A 8 10.463 -6.510 25.546 1.00 27.14 C
ATOM 22 P A A 9 7.082 -9.194 21.131 1.00 52.85 P
ATOM 23 OP1 A A 9 6.817 -9.916 19.866 1.00 51.90 O
ATOM 24 OP2 A A 9 6.222 -8.075 21.580 1.00 42.94 O
ATOM 25 O5' A A 9 7.044 -10.248 22.335 1.00 53.69 O
TER
ATOM 1 O3' U B 8 8.598 -8.705 21.121 1.00 43.30 O
ATOM 2 P A B 9 7.082 -9.194 21.131 1.00 52.85 P
ATOM 3 OP1 A B 9 6.817 -9.916 19.866 1.00 51.90 O
ATOM 4 OP2 A B 9 6.222 -8.075 21.580 1.00 42.94 O
ATOM 5 O5' A B 9 7.044 -10.248 22.335 1.00 53.69 O
ATOM 6 C5' A B 9 7.275 -11.642 22.158 1.00 43.90 C
ATOM 7 C4' A B 9 6.215 -12.394 22.913 1.00 45.71 C
ATOM 8 O4' A B 9 6.369 -12.136 24.328 1.00 43.59 O
ATOM 9 C3' A B 9 4.808 -11.944 22.549 1.00 48.62 C
ATOM 10 O3' A B 9 4.153 -12.914 21.748 1.00 46.96 O
ATOM 11 C2' A B 9 4.075 -11.662 23.854 1.00 39.60 C
ATOM 12 O2' A B 9 2.917 -12.470 23.967 1.00 44.30 O
ATOM 13 C1' A B 9 5.104 -12.011 24.932 1.00 36.03 C
ATOM 14 N9 A B 9 5.160 -11.066 26.063 1.00 37.17 N
ATOM 15 C8 A B 9 5.218 -9.709 26.060 1.00 34.24 C
ATOM 16 N7 A B 9 5.248 -9.206 27.275 1.00 37.62 N
ATOM 17 C5 A B 9 5.203 -10.300 28.129 1.00 36.17 C
ATOM 18 C6 A B 9 5.204 -10.462 29.544 1.00 38.47 C
ATOM 19 N6 A B 9 5.260 -9.465 30.437 1.00 30.10 N
ATOM 20 N1 A B 9 5.153 -11.718 30.033 1.00 35.09 N
ATOM 21 C2 A B 9 5.107 -12.739 29.177 1.00 33.44 C
ATOM 22 N3 A B 9 5.100 -12.712 27.850 1.00 34.35 N
ATOM 23 C4 A B 9 5.150 -11.454 27.384 1.00 36.30 C
TER
Atoms:
C4: (10.948,-6.800,27.889)
N3: (11.289,-8.093,27.575)
OP1: (11.120,-6.392,18.030)
OP2: (10.936,-4.104,19.240)
C2: (11.251,-8.646,26.331)
C1': (10.788,-8.407,23.969)
C3': (9.188,-8.041,22.224)
O5': (11.764,-5.991,20.427)
O4': (11.320,-7.485,23.052)
C5': (10.572,-6.166,21.172)
P: (11.652,-5.371,18.961)
C4': (10.557,-7.521,21.826)
C2': (9.470,-8.954,23.416)
O2': (9.706,-10.292,22.995)
N1: (10.814,-7.819,25.320)
O4: (11.042,-6.444,29.058)
O2: (11.578,-9.800,26.141)
C6: (10.463,-6.510,25.546)
C5: (10.509,-5.987,26.775)
O3': (8.598,-8.705,21.121)
N3: (11.289,-8.093,27.575)
OP1: (11.120,-6.392,18.030)
OP2: (10.936,-4.104,19.240)
C2: (11.251,-8.646,26.331)
C1': (10.788,-8.407,23.969)
C3': (9.188,-8.041,22.224)
O5': (11.764,-5.991,20.427)
O4': (11.320,-7.485,23.052)
C5': (10.572,-6.166,21.172)
P: (11.652,-5.371,18.961)
C4': (10.557,-7.521,21.826)
C2': (9.470,-8.954,23.416)
O2': (9.706,-10.292,22.995)
N1: (10.814,-7.819,25.320)
O4: (11.042,-6.444,29.058)
O2: (11.578,-9.800,26.141)
C6: (10.463,-6.510,25.546)
C5: (10.509,-5.987,26.775)
O3': (8.598,-8.705,21.121)
OP1: (6.817,-9.916,19.866)
OP2: (6.222,-8.075,21.580)
C3': (4.808,-11.944,22.549)
C1': (5.104,-12.011,24.932)
C5': (7.275,-11.642,22.158)
O4': (6.369,-12.136,24.328)
C8: (5.218,-9.709,26.060)
O2': (2.917,-12.470,23.967)
C6: (5.204,-10.462,29.544)
C5: (5.203,-10.300,28.129)
C4: (5.150,-11.454,27.384)
P: (7.082,-9.194,21.131)
C4': (6.215,-12.394,22.913)
C2': (4.075,-11.662,23.854)
C2: (5.107,-12.739,29.177)
N1: (5.153,-11.718,30.033)
N3: (5.100,-12.712,27.850)
N6: (5.260,-9.465,30.437)
N7: (5.248,-9.206,27.275)
N9: (5.160,-11.066,26.063)
O5': (7.044,-10.248,22.335)
O3': (4.153,-12.914,21.748)
OP2: (6.222,-8.075,21.580)
C3': (4.808,-11.944,22.549)
C1': (5.104,-12.011,24.932)
C5': (7.275,-11.642,22.158)
O4': (6.369,-12.136,24.328)
C8: (5.218,-9.709,26.060)
O2': (2.917,-12.470,23.967)
C6: (5.204,-10.462,29.544)
C5: (5.203,-10.300,28.129)
C4: (5.150,-11.454,27.384)
P: (7.082,-9.194,21.131)
C4': (6.215,-12.394,22.913)
C2': (4.075,-11.662,23.854)
C2: (5.107,-12.739,29.177)
N1: (5.153,-11.718,30.033)
N3: (5.100,-12.712,27.850)
N6: (5.260,-9.465,30.437)
N7: (5.248,-9.206,27.275)
N9: (5.160,-11.066,26.063)
O5': (7.044,-10.248,22.335)
O3': (4.153,-12.914,21.748)
Image (generated by PyMOL):