Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3K5Y:B2:B3
Extra
PDB:
ATOM 1 O3' G A 1 -0.248 -42.670 -7.259 1.00 54.12 O
ATOM 2 P U A 2 -1.003 -41.705 -6.250 1.00 51.99 P
ATOM 3 OP1 U A 2 -0.252 -40.388 -6.224 1.00 56.69 O
ATOM 4 OP2 U A 2 -1.187 -42.439 -4.936 1.00 52.33 O
ATOM 5 O5' U A 2 -2.341 -41.515 -6.887 1.00 52.18 O
ATOM 6 C5' U A 2 -3.455 -40.864 -6.178 1.00 49.85 C
ATOM 7 C4' U A 2 -3.920 -39.665 -7.001 1.00 53.56 C
ATOM 8 O4' U A 2 -4.392 -40.120 -8.296 1.00 50.94 O
ATOM 9 C3' U A 2 -5.092 -38.914 -6.399 1.00 52.36 C
ATOM 10 O3' U A 2 -4.592 -37.962 -5.468 1.00 51.55 O
ATOM 11 C2' U A 2 -5.640 -38.218 -7.634 1.00 52.34 C
ATOM 12 O2' U A 2 -4.909 -37.044 -7.932 1.00 56.25 O
ATOM 13 C1' U A 2 -5.440 -39.272 -8.726 1.00 49.29 C
ATOM 14 N1 U A 2 -6.662 -40.081 -8.972 1.00 52.84 N
ATOM 15 C2 U A 2 -7.543 -39.684 -9.946 1.00 53.15 C
ATOM 16 O2 U A 2 -7.374 -38.699 -10.629 1.00 47.05 O
ATOM 17 N3 U A 2 -8.641 -40.496 -10.101 1.00 44.70 N
ATOM 18 C4 U A 2 -8.929 -41.649 -9.365 1.00 46.81 C
ATOM 19 O4 U A 2 -9.959 -42.294 -9.612 1.00 44.51 O
ATOM 20 C5 U A 2 -7.967 -42.007 -8.347 1.00 46.30 C
ATOM 21 C6 U A 2 -6.883 -41.215 -8.199 1.00 49.44 C
ATOM 22 P G A 3 -5.382 -37.644 -4.113 1.00 55.47 P
ATOM 23 OP1 G A 3 -4.424 -37.058 -3.159 1.00 57.21 O
ATOM 24 OP2 G A 3 -6.168 -38.844 -3.722 1.00 61.16 O
ATOM 25 O5' G A 3 -6.414 -36.515 -4.605 1.00 56.51 O
TER
ATOM 1 O3' U B 2 -4.592 -37.962 -5.468 1.00 51.55 O
ATOM 2 P G B 3 -5.382 -37.644 -4.113 1.00 55.47 P
ATOM 3 OP1 G B 3 -4.424 -37.058 -3.159 1.00 57.21 O
ATOM 4 OP2 G B 3 -6.168 -38.844 -3.722 1.00 61.16 O
ATOM 5 O5' G B 3 -6.414 -36.515 -4.605 1.00 56.51 O
ATOM 6 C5' G B 3 -5.930 -35.354 -5.269 1.00 56.81 C
ATOM 7 C4' G B 3 -7.068 -34.434 -5.676 1.00 49.70 C
ATOM 8 O4' G B 3 -7.968 -35.155 -6.548 1.00 55.79 O
ATOM 9 C3' G B 3 -7.981 -33.939 -4.558 1.00 53.45 C
ATOM 10 O3' G B 3 -7.417 -32.824 -3.868 1.00 55.05 O
ATOM 11 C2' G B 3 -9.217 -33.534 -5.351 1.00 51.30 C
ATOM 12 O2' G B 3 -9.076 -32.305 -6.025 1.00 48.89 O
ATOM 13 C1' G B 3 -9.278 -34.653 -6.382 1.00 54.51 C
ATOM 14 N9 G B 3 -10.170 -35.743 -6.003 1.00 56.84 N
ATOM 15 C8 G B 3 -9.878 -36.871 -5.264 1.00 54.84 C
ATOM 16 N7 G B 3 -10.908 -37.659 -5.100 1.00 55.45 N
ATOM 17 C5 G B 3 -11.943 -37.010 -5.775 1.00 51.22 C
ATOM 18 C6 G B 3 -13.302 -37.372 -5.968 1.00 50.28 C
ATOM 19 O6 G B 3 -13.873 -38.384 -5.549 1.00 53.58 O
ATOM 20 N1 G B 3 -14.005 -36.426 -6.725 1.00 49.61 N
ATOM 21 C2 G B 3 -13.448 -35.266 -7.230 1.00 48.91 C
ATOM 22 N2 G B 3 -14.248 -34.448 -7.928 1.00 43.77 N
ATOM 23 N3 G B 3 -12.179 -34.921 -7.057 1.00 51.82 N
ATOM 24 C4 G B 3 -11.497 -35.833 -6.329 1.00 53.25 C
ATOM 25 P C B 4 -7.876 -32.445 -2.373 1.00 61.33 P
ATOM 26 OP1 C B 4 -6.941 -31.407 -1.895 1.00 62.17 O
ATOM 27 OP2 C B 4 -8.083 -33.669 -1.565 1.00 59.44 O
ATOM 28 O5' C B 4 -9.318 -31.798 -2.581 1.00 55.97 O
TER
ATOM 2 P U A 2 -1.003 -41.705 -6.250 1.00 51.99 P
ATOM 3 OP1 U A 2 -0.252 -40.388 -6.224 1.00 56.69 O
ATOM 4 OP2 U A 2 -1.187 -42.439 -4.936 1.00 52.33 O
ATOM 5 O5' U A 2 -2.341 -41.515 -6.887 1.00 52.18 O
ATOM 6 C5' U A 2 -3.455 -40.864 -6.178 1.00 49.85 C
ATOM 7 C4' U A 2 -3.920 -39.665 -7.001 1.00 53.56 C
ATOM 8 O4' U A 2 -4.392 -40.120 -8.296 1.00 50.94 O
ATOM 9 C3' U A 2 -5.092 -38.914 -6.399 1.00 52.36 C
ATOM 10 O3' U A 2 -4.592 -37.962 -5.468 1.00 51.55 O
ATOM 11 C2' U A 2 -5.640 -38.218 -7.634 1.00 52.34 C
ATOM 12 O2' U A 2 -4.909 -37.044 -7.932 1.00 56.25 O
ATOM 13 C1' U A 2 -5.440 -39.272 -8.726 1.00 49.29 C
ATOM 14 N1 U A 2 -6.662 -40.081 -8.972 1.00 52.84 N
ATOM 15 C2 U A 2 -7.543 -39.684 -9.946 1.00 53.15 C
ATOM 16 O2 U A 2 -7.374 -38.699 -10.629 1.00 47.05 O
ATOM 17 N3 U A 2 -8.641 -40.496 -10.101 1.00 44.70 N
ATOM 18 C4 U A 2 -8.929 -41.649 -9.365 1.00 46.81 C
ATOM 19 O4 U A 2 -9.959 -42.294 -9.612 1.00 44.51 O
ATOM 20 C5 U A 2 -7.967 -42.007 -8.347 1.00 46.30 C
ATOM 21 C6 U A 2 -6.883 -41.215 -8.199 1.00 49.44 C
ATOM 22 P G A 3 -5.382 -37.644 -4.113 1.00 55.47 P
ATOM 23 OP1 G A 3 -4.424 -37.058 -3.159 1.00 57.21 O
ATOM 24 OP2 G A 3 -6.168 -38.844 -3.722 1.00 61.16 O
ATOM 25 O5' G A 3 -6.414 -36.515 -4.605 1.00 56.51 O
TER
ATOM 1 O3' U B 2 -4.592 -37.962 -5.468 1.00 51.55 O
ATOM 2 P G B 3 -5.382 -37.644 -4.113 1.00 55.47 P
ATOM 3 OP1 G B 3 -4.424 -37.058 -3.159 1.00 57.21 O
ATOM 4 OP2 G B 3 -6.168 -38.844 -3.722 1.00 61.16 O
ATOM 5 O5' G B 3 -6.414 -36.515 -4.605 1.00 56.51 O
ATOM 6 C5' G B 3 -5.930 -35.354 -5.269 1.00 56.81 C
ATOM 7 C4' G B 3 -7.068 -34.434 -5.676 1.00 49.70 C
ATOM 8 O4' G B 3 -7.968 -35.155 -6.548 1.00 55.79 O
ATOM 9 C3' G B 3 -7.981 -33.939 -4.558 1.00 53.45 C
ATOM 10 O3' G B 3 -7.417 -32.824 -3.868 1.00 55.05 O
ATOM 11 C2' G B 3 -9.217 -33.534 -5.351 1.00 51.30 C
ATOM 12 O2' G B 3 -9.076 -32.305 -6.025 1.00 48.89 O
ATOM 13 C1' G B 3 -9.278 -34.653 -6.382 1.00 54.51 C
ATOM 14 N9 G B 3 -10.170 -35.743 -6.003 1.00 56.84 N
ATOM 15 C8 G B 3 -9.878 -36.871 -5.264 1.00 54.84 C
ATOM 16 N7 G B 3 -10.908 -37.659 -5.100 1.00 55.45 N
ATOM 17 C5 G B 3 -11.943 -37.010 -5.775 1.00 51.22 C
ATOM 18 C6 G B 3 -13.302 -37.372 -5.968 1.00 50.28 C
ATOM 19 O6 G B 3 -13.873 -38.384 -5.549 1.00 53.58 O
ATOM 20 N1 G B 3 -14.005 -36.426 -6.725 1.00 49.61 N
ATOM 21 C2 G B 3 -13.448 -35.266 -7.230 1.00 48.91 C
ATOM 22 N2 G B 3 -14.248 -34.448 -7.928 1.00 43.77 N
ATOM 23 N3 G B 3 -12.179 -34.921 -7.057 1.00 51.82 N
ATOM 24 C4 G B 3 -11.497 -35.833 -6.329 1.00 53.25 C
ATOM 25 P C B 4 -7.876 -32.445 -2.373 1.00 61.33 P
ATOM 26 OP1 C B 4 -6.941 -31.407 -1.895 1.00 62.17 O
ATOM 27 OP2 C B 4 -8.083 -33.669 -1.565 1.00 59.44 O
ATOM 28 O5' C B 4 -9.318 -31.798 -2.581 1.00 55.97 O
TER
Atoms:
C4: (-8.929,-41.649,-9.365)
N3: (-8.641,-40.496,-10.101)
OP1: (-0.252,-40.388,-6.224)
OP2: (-1.187,-42.439,-4.936)
C2: (-7.543,-39.684,-9.946)
C1': (-5.440,-39.272,-8.726)
C3': (-5.092,-38.914,-6.399)
O5': (-2.341,-41.515,-6.887)
O4': (-4.392,-40.120,-8.296)
C5': (-3.455,-40.864,-6.178)
P: (-1.003,-41.705,-6.250)
C4': (-3.920,-39.665,-7.001)
C2': (-5.640,-38.218,-7.634)
O2': (-4.909,-37.044,-7.932)
N1: (-6.662,-40.081,-8.972)
O4: (-9.959,-42.294,-9.612)
O2: (-7.374,-38.699,-10.629)
C6: (-6.883,-41.215,-8.199)
C5: (-7.967,-42.007,-8.347)
O3': (-4.592,-37.962,-5.468)
N3: (-8.641,-40.496,-10.101)
OP1: (-0.252,-40.388,-6.224)
OP2: (-1.187,-42.439,-4.936)
C2: (-7.543,-39.684,-9.946)
C1': (-5.440,-39.272,-8.726)
C3': (-5.092,-38.914,-6.399)
O5': (-2.341,-41.515,-6.887)
O4': (-4.392,-40.120,-8.296)
C5': (-3.455,-40.864,-6.178)
P: (-1.003,-41.705,-6.250)
C4': (-3.920,-39.665,-7.001)
C2': (-5.640,-38.218,-7.634)
O2': (-4.909,-37.044,-7.932)
N1: (-6.662,-40.081,-8.972)
O4: (-9.959,-42.294,-9.612)
O2: (-7.374,-38.699,-10.629)
C6: (-6.883,-41.215,-8.199)
C5: (-7.967,-42.007,-8.347)
O3': (-4.592,-37.962,-5.468)
OP1: (-4.424,-37.058,-3.159)
OP2: (-6.168,-38.844,-3.722)
C3': (-7.981,-33.939,-4.558)
C1': (-9.278,-34.653,-6.382)
C5': (-5.930,-35.354,-5.269)
O6: (-13.873,-38.384,-5.549)
O4': (-7.968,-35.155,-6.548)
C8: (-9.878,-36.871,-5.264)
C2: (-13.448,-35.266,-7.230)
C6: (-13.302,-37.372,-5.968)
C5: (-11.943,-37.010,-5.775)
C4: (-11.497,-35.833,-6.329)
P: (-5.382,-37.644,-4.113)
C4': (-7.068,-34.434,-5.676)
C2': (-9.217,-33.534,-5.351)
O2': (-9.076,-32.305,-6.025)
N1: (-14.005,-36.426,-6.725)
N2: (-14.248,-34.448,-7.928)
N3: (-12.179,-34.921,-7.057)
N7: (-10.908,-37.659,-5.100)
N9: (-10.170,-35.743,-6.003)
O5': (-6.414,-36.515,-4.605)
O3': (-7.417,-32.824,-3.868)
OP2: (-6.168,-38.844,-3.722)
C3': (-7.981,-33.939,-4.558)
C1': (-9.278,-34.653,-6.382)
C5': (-5.930,-35.354,-5.269)
O6: (-13.873,-38.384,-5.549)
O4': (-7.968,-35.155,-6.548)
C8: (-9.878,-36.871,-5.264)
C2: (-13.448,-35.266,-7.230)
C6: (-13.302,-37.372,-5.968)
C5: (-11.943,-37.010,-5.775)
C4: (-11.497,-35.833,-6.329)
P: (-5.382,-37.644,-4.113)
C4': (-7.068,-34.434,-5.676)
C2': (-9.217,-33.534,-5.351)
O2': (-9.076,-32.305,-6.025)
N1: (-14.005,-36.426,-6.725)
N2: (-14.248,-34.448,-7.928)
N3: (-12.179,-34.921,-7.057)
N7: (-10.908,-37.659,-5.100)
N9: (-10.170,-35.743,-6.003)
O5': (-6.414,-36.515,-4.605)
O3': (-7.417,-32.824,-3.868)
Image (generated by PyMOL):