Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3K5Z:B2:B3
Extra
PDB:
ATOM 1 O3' G A 1 37.208 -21.095 4.129 1.00 35.99 O
ATOM 2 P U A 2 36.722 -20.022 3.060 1.00 40.52 P
ATOM 3 OP1 U A 2 35.256 -19.922 3.194 1.00 47.76 O
ATOM 4 OP2 U A 2 37.329 -20.338 1.756 1.00 31.20 O
ATOM 5 O5' U A 2 37.370 -18.672 3.585 1.00 38.90 O
ATOM 6 C5' U A 2 37.218 -17.435 2.878 1.00 33.55 C
ATOM 7 C4' U A 2 36.412 -16.478 3.729 1.00 33.97 C
ATOM 8 O4' U A 2 37.073 -16.387 5.012 1.00 31.77 O
ATOM 9 C3' U A 2 36.292 -15.053 3.225 1.00 36.48 C
ATOM 10 O3' U A 2 35.136 -14.931 2.393 1.00 41.04 O
ATOM 11 C2' U A 2 36.072 -14.300 4.518 1.00 35.25 C
ATOM 12 O2' U A 2 34.758 -14.470 4.979 1.00 35.53 O
ATOM 13 C1' U A 2 36.964 -15.051 5.491 1.00 39.58 C
ATOM 14 N1 U A 2 38.346 -14.482 5.685 1.00 36.36 N
ATOM 15 C2 U A 2 38.506 -13.561 6.690 1.00 36.45 C
ATOM 16 O2 U A 2 37.566 -13.198 7.381 1.00 38.59 O
ATOM 17 N3 U A 2 39.779 -13.069 6.850 1.00 28.17 N
ATOM 18 C4 U A 2 40.896 -13.415 6.103 1.00 38.40 C
ATOM 19 O4 U A 2 41.986 -12.902 6.369 1.00 31.46 O
ATOM 20 C5 U A 2 40.652 -14.392 5.065 1.00 29.34 C
ATOM 21 C6 U A 2 39.410 -14.878 4.903 1.00 29.34 C
ATOM 22 P A A 3 35.186 -14.019 1.083 1.00 45.49 P
ATOM 23 OP1 A A 3 34.085 -14.475 0.209 1.00 46.81 O
ATOM 24 OP2 A A 3 36.566 -14.025 0.540 1.00 44.75 O
ATOM 25 O5' A A 3 34.921 -12.550 1.662 1.00 40.06 O
TER
ATOM 1 O3' U B 2 35.136 -14.931 2.393 1.00 41.04 O
ATOM 2 P A B 3 35.186 -14.019 1.083 1.00 45.49 P
ATOM 3 OP1 A B 3 34.085 -14.475 0.209 1.00 46.81 O
ATOM 4 OP2 A B 3 36.566 -14.025 0.540 1.00 44.75 O
ATOM 5 O5' A B 3 34.921 -12.550 1.662 1.00 40.06 O
ATOM 6 C5' A B 3 33.736 -12.245 2.392 1.00 39.81 C
ATOM 7 C4' A B 3 33.676 -10.787 2.861 1.00 39.87 C
ATOM 8 O4' A B 3 34.859 -10.484 3.672 1.00 43.94 O
ATOM 9 C3' A B 3 33.672 -9.702 1.771 1.00 37.03 C
ATOM 10 O3' A B 3 32.355 -9.525 1.258 1.00 39.58 O
ATOM 11 C2' A B 3 34.073 -8.505 2.638 1.00 41.87 C
ATOM 12 O2' A B 3 33.003 -8.080 3.465 1.00 41.31 O
ATOM 13 C1' A B 3 35.157 -9.101 3.543 1.00 44.04 C
ATOM 14 N9 A B 3 36.476 -8.939 2.984 1.00 38.08 N
ATOM 15 C8 A B 3 37.114 -9.746 2.087 1.00 35.04 C
ATOM 16 N7 A B 3 38.307 -9.350 1.752 1.00 35.58 N
ATOM 17 C5 A B 3 38.495 -8.191 2.500 1.00 37.35 C
ATOM 18 C6 A B 3 39.572 -7.302 2.620 1.00 45.46 C
ATOM 19 N6 A B 3 40.710 -7.452 1.937 1.00 47.35 N
ATOM 20 N1 A B 3 39.433 -6.253 3.452 1.00 37.60 N
ATOM 21 C2 A B 3 38.290 -6.104 4.141 1.00 31.54 C
ATOM 22 N3 A B 3 37.198 -6.878 4.107 1.00 35.85 N
ATOM 23 C4 A B 3 37.368 -7.911 3.259 1.00 34.49 C
ATOM 24 P C B 4 32.056 -8.883 -0.190 1.00 42.69 P
ATOM 25 OP1 C B 4 30.578 -8.839 -0.316 1.00 45.70 O
ATOM 26 OP2 C B 4 32.862 -9.559 -1.224 1.00 46.79 O
ATOM 27 O5' C B 4 32.609 -7.395 -0.084 1.00 46.60 O
TER
ATOM 2 P U A 2 36.722 -20.022 3.060 1.00 40.52 P
ATOM 3 OP1 U A 2 35.256 -19.922 3.194 1.00 47.76 O
ATOM 4 OP2 U A 2 37.329 -20.338 1.756 1.00 31.20 O
ATOM 5 O5' U A 2 37.370 -18.672 3.585 1.00 38.90 O
ATOM 6 C5' U A 2 37.218 -17.435 2.878 1.00 33.55 C
ATOM 7 C4' U A 2 36.412 -16.478 3.729 1.00 33.97 C
ATOM 8 O4' U A 2 37.073 -16.387 5.012 1.00 31.77 O
ATOM 9 C3' U A 2 36.292 -15.053 3.225 1.00 36.48 C
ATOM 10 O3' U A 2 35.136 -14.931 2.393 1.00 41.04 O
ATOM 11 C2' U A 2 36.072 -14.300 4.518 1.00 35.25 C
ATOM 12 O2' U A 2 34.758 -14.470 4.979 1.00 35.53 O
ATOM 13 C1' U A 2 36.964 -15.051 5.491 1.00 39.58 C
ATOM 14 N1 U A 2 38.346 -14.482 5.685 1.00 36.36 N
ATOM 15 C2 U A 2 38.506 -13.561 6.690 1.00 36.45 C
ATOM 16 O2 U A 2 37.566 -13.198 7.381 1.00 38.59 O
ATOM 17 N3 U A 2 39.779 -13.069 6.850 1.00 28.17 N
ATOM 18 C4 U A 2 40.896 -13.415 6.103 1.00 38.40 C
ATOM 19 O4 U A 2 41.986 -12.902 6.369 1.00 31.46 O
ATOM 20 C5 U A 2 40.652 -14.392 5.065 1.00 29.34 C
ATOM 21 C6 U A 2 39.410 -14.878 4.903 1.00 29.34 C
ATOM 22 P A A 3 35.186 -14.019 1.083 1.00 45.49 P
ATOM 23 OP1 A A 3 34.085 -14.475 0.209 1.00 46.81 O
ATOM 24 OP2 A A 3 36.566 -14.025 0.540 1.00 44.75 O
ATOM 25 O5' A A 3 34.921 -12.550 1.662 1.00 40.06 O
TER
ATOM 1 O3' U B 2 35.136 -14.931 2.393 1.00 41.04 O
ATOM 2 P A B 3 35.186 -14.019 1.083 1.00 45.49 P
ATOM 3 OP1 A B 3 34.085 -14.475 0.209 1.00 46.81 O
ATOM 4 OP2 A B 3 36.566 -14.025 0.540 1.00 44.75 O
ATOM 5 O5' A B 3 34.921 -12.550 1.662 1.00 40.06 O
ATOM 6 C5' A B 3 33.736 -12.245 2.392 1.00 39.81 C
ATOM 7 C4' A B 3 33.676 -10.787 2.861 1.00 39.87 C
ATOM 8 O4' A B 3 34.859 -10.484 3.672 1.00 43.94 O
ATOM 9 C3' A B 3 33.672 -9.702 1.771 1.00 37.03 C
ATOM 10 O3' A B 3 32.355 -9.525 1.258 1.00 39.58 O
ATOM 11 C2' A B 3 34.073 -8.505 2.638 1.00 41.87 C
ATOM 12 O2' A B 3 33.003 -8.080 3.465 1.00 41.31 O
ATOM 13 C1' A B 3 35.157 -9.101 3.543 1.00 44.04 C
ATOM 14 N9 A B 3 36.476 -8.939 2.984 1.00 38.08 N
ATOM 15 C8 A B 3 37.114 -9.746 2.087 1.00 35.04 C
ATOM 16 N7 A B 3 38.307 -9.350 1.752 1.00 35.58 N
ATOM 17 C5 A B 3 38.495 -8.191 2.500 1.00 37.35 C
ATOM 18 C6 A B 3 39.572 -7.302 2.620 1.00 45.46 C
ATOM 19 N6 A B 3 40.710 -7.452 1.937 1.00 47.35 N
ATOM 20 N1 A B 3 39.433 -6.253 3.452 1.00 37.60 N
ATOM 21 C2 A B 3 38.290 -6.104 4.141 1.00 31.54 C
ATOM 22 N3 A B 3 37.198 -6.878 4.107 1.00 35.85 N
ATOM 23 C4 A B 3 37.368 -7.911 3.259 1.00 34.49 C
ATOM 24 P C B 4 32.056 -8.883 -0.190 1.00 42.69 P
ATOM 25 OP1 C B 4 30.578 -8.839 -0.316 1.00 45.70 O
ATOM 26 OP2 C B 4 32.862 -9.559 -1.224 1.00 46.79 O
ATOM 27 O5' C B 4 32.609 -7.395 -0.084 1.00 46.60 O
TER
Atoms:
C4: (40.896,-13.415,6.103)
N3: (39.779,-13.069,6.850)
OP1: (35.256,-19.922,3.194)
OP2: (37.329,-20.338,1.756)
C2: (38.506,-13.561,6.690)
C1': (36.964,-15.051,5.491)
C3': (36.292,-15.053,3.225)
O5': (37.370,-18.672,3.585)
O4': (37.073,-16.387,5.012)
C5': (37.218,-17.435,2.878)
P: (36.722,-20.022,3.060)
C4': (36.412,-16.478,3.729)
C2': (36.072,-14.300,4.518)
O2': (34.758,-14.470,4.979)
N1: (38.346,-14.482,5.685)
O4: (41.986,-12.902,6.369)
O2: (37.566,-13.198,7.381)
C6: (39.410,-14.878,4.903)
C5: (40.652,-14.392,5.065)
O3': (35.136,-14.931,2.393)
N3: (39.779,-13.069,6.850)
OP1: (35.256,-19.922,3.194)
OP2: (37.329,-20.338,1.756)
C2: (38.506,-13.561,6.690)
C1': (36.964,-15.051,5.491)
C3': (36.292,-15.053,3.225)
O5': (37.370,-18.672,3.585)
O4': (37.073,-16.387,5.012)
C5': (37.218,-17.435,2.878)
P: (36.722,-20.022,3.060)
C4': (36.412,-16.478,3.729)
C2': (36.072,-14.300,4.518)
O2': (34.758,-14.470,4.979)
N1: (38.346,-14.482,5.685)
O4: (41.986,-12.902,6.369)
O2: (37.566,-13.198,7.381)
C6: (39.410,-14.878,4.903)
C5: (40.652,-14.392,5.065)
O3': (35.136,-14.931,2.393)
OP1: (34.085,-14.475,0.209)
OP2: (36.566,-14.025,0.540)
C3': (33.672,-9.702,1.771)
C1': (35.157,-9.101,3.543)
C5': (33.736,-12.245,2.392)
O4': (34.859,-10.484,3.672)
C8: (37.114,-9.746,2.087)
O2': (33.003,-8.080,3.465)
C6: (39.572,-7.302,2.620)
C5: (38.495,-8.191,2.500)
C4: (37.368,-7.911,3.259)
P: (35.186,-14.019,1.083)
C4': (33.676,-10.787,2.861)
C2': (34.073,-8.505,2.638)
C2: (38.290,-6.104,4.141)
N1: (39.433,-6.253,3.452)
N3: (37.198,-6.878,4.107)
N6: (40.710,-7.452,1.937)
N7: (38.307,-9.350,1.752)
N9: (36.476,-8.939,2.984)
O5': (34.921,-12.550,1.662)
O3': (32.355,-9.525,1.258)
OP2: (36.566,-14.025,0.540)
C3': (33.672,-9.702,1.771)
C1': (35.157,-9.101,3.543)
C5': (33.736,-12.245,2.392)
O4': (34.859,-10.484,3.672)
C8: (37.114,-9.746,2.087)
O2': (33.003,-8.080,3.465)
C6: (39.572,-7.302,2.620)
C5: (38.495,-8.191,2.500)
C4: (37.368,-7.911,3.259)
P: (35.186,-14.019,1.083)
C4': (33.676,-10.787,2.861)
C2': (34.073,-8.505,2.638)
C2: (38.290,-6.104,4.141)
N1: (39.433,-6.253,3.452)
N3: (37.198,-6.878,4.107)
N6: (40.710,-7.452,1.937)
N7: (38.307,-9.350,1.752)
N9: (36.476,-8.939,2.984)
O5': (34.921,-12.550,1.662)
O3': (32.355,-9.525,1.258)
Image (generated by PyMOL):