Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A1222:A1052
Extra
PDB:
ATOM 1 O3' C A1221 13.700 88.928 99.231 1.00 42.27 O
ATOM 2 P C A1222 12.883 89.130 97.869 1.00 41.60 P
ATOM 3 OP1 C A1222 12.910 87.831 97.181 1.00 42.35 O
ATOM 4 OP2 C A1222 13.305 90.357 97.136 1.00 42.54 O
ATOM 5 O5' C A1222 11.419 89.436 98.373 1.00 41.79 O
ATOM 6 C5' C A1222 10.736 88.575 99.268 1.00 41.61 C
ATOM 7 C4' C A1222 9.554 89.315 99.823 1.00 41.98 C
ATOM 8 O4' C A1222 10.000 90.432 100.637 1.00 40.85 O
ATOM 9 C3' C A1222 8.752 90.014 98.744 1.00 39.65 C
ATOM 10 O3' C A1222 7.925 89.101 98.058 1.00 37.50 O
ATOM 11 C2' C A1222 7.983 91.042 99.549 1.00 40.27 C
ATOM 12 O2' C A1222 6.927 90.428 100.265 1.00 41.55 O
ATOM 13 C1' C A1222 9.074 91.505 100.515 1.00 41.14 C
ATOM 14 N1 C A1222 9.784 92.691 100.004 1.00 42.21 N
ATOM 15 C2 C A1222 9.274 93.964 100.302 1.00 41.81 C
ATOM 16 O2 C A1222 8.253 94.059 100.997 1.00 40.25 O
ATOM 17 N3 C A1222 9.910 95.057 99.827 1.00 42.76 N
ATOM 18 C4 C A1222 11.022 94.922 99.095 1.00 43.08 C
ATOM 19 N4 C A1222 11.637 96.035 98.667 1.00 42.65 N
ATOM 20 C5 C A1222 11.561 93.644 98.774 1.00 42.50 C
ATOM 21 C6 C A1222 10.917 92.565 99.246 1.00 43.06 C
ATOM 22 P U A1223 7.634 89.318 96.508 1.00 36.11 P
ATOM 23 OP1 U A1223 6.774 88.185 96.138 1.00 38.21 O
ATOM 24 OP2 U A1223 8.891 89.534 95.777 1.00 34.43 O
ATOM 25 O5' U A1223 6.760 90.640 96.511 1.00 33.82 O
TER
ATOM 1 O3' A B1051 6.082 106.199 98.031 1.00 46.36 O
ATOM 2 P G B1052 6.621 106.128 99.522 1.00 46.62 P
ATOM 3 OP1 G B1052 6.006 107.294 100.188 1.00 48.55 O
ATOM 4 OP2 G B1052 8.096 105.986 99.510 1.00 44.94 O
ATOM 5 O5' G B1052 5.973 104.780 100.070 1.00 46.12 O
ATOM 6 C5' G B1052 4.570 104.712 100.341 1.00 45.47 C
ATOM 7 C4' G B1052 4.148 103.306 100.689 1.00 46.77 C
ATOM 8 O4' G B1052 4.518 102.391 99.628 1.00 46.23 O
ATOM 9 C3' G B1052 4.745 102.668 101.928 1.00 46.52 C
ATOM 10 O3' G B1052 4.121 103.084 103.126 1.00 46.25 O
ATOM 11 C2' G B1052 4.483 101.194 101.671 1.00 47.76 C
ATOM 12 O2' G B1052 3.115 100.866 101.848 1.00 50.14 O
ATOM 13 C1' G B1052 4.794 101.109 100.180 1.00 46.55 C
ATOM 14 N9 G B1052 6.188 100.784 99.894 1.00 44.92 N
ATOM 15 C8 G B1052 7.158 101.665 99.492 1.00 45.29 C
ATOM 16 N7 G B1052 8.309 101.095 99.269 1.00 46.30 N
ATOM 17 C5 G B1052 8.097 99.756 99.555 1.00 45.18 C
ATOM 18 C6 G B1052 8.991 98.660 99.492 1.00 44.88 C
ATOM 19 O6 G B1052 10.190 98.663 99.183 1.00 43.26 O
ATOM 20 N1 G B1052 8.362 97.469 99.835 1.00 45.61 N
ATOM 21 C2 G B1052 7.048 97.350 100.198 1.00 45.57 C
ATOM 22 N2 G B1052 6.631 96.105 100.450 1.00 43.88 N
ATOM 23 N3 G B1052 6.206 98.373 100.291 1.00 45.78 N
ATOM 24 C4 G B1052 6.794 99.541 99.948 1.00 44.89 C
ATOM 25 P G B1053 4.976 103.082 104.478 1.00 45.82 P
ATOM 26 OP1 G B1053 4.064 103.457 105.582 1.00 44.39 O
ATOM 27 OP2 G B1053 6.171 103.915 104.202 1.00 47.73 O
ATOM 28 O5' G B1053 5.460 101.562 104.633 1.00 44.57 O
TER
ATOM 2 P C A1222 12.883 89.130 97.869 1.00 41.60 P
ATOM 3 OP1 C A1222 12.910 87.831 97.181 1.00 42.35 O
ATOM 4 OP2 C A1222 13.305 90.357 97.136 1.00 42.54 O
ATOM 5 O5' C A1222 11.419 89.436 98.373 1.00 41.79 O
ATOM 6 C5' C A1222 10.736 88.575 99.268 1.00 41.61 C
ATOM 7 C4' C A1222 9.554 89.315 99.823 1.00 41.98 C
ATOM 8 O4' C A1222 10.000 90.432 100.637 1.00 40.85 O
ATOM 9 C3' C A1222 8.752 90.014 98.744 1.00 39.65 C
ATOM 10 O3' C A1222 7.925 89.101 98.058 1.00 37.50 O
ATOM 11 C2' C A1222 7.983 91.042 99.549 1.00 40.27 C
ATOM 12 O2' C A1222 6.927 90.428 100.265 1.00 41.55 O
ATOM 13 C1' C A1222 9.074 91.505 100.515 1.00 41.14 C
ATOM 14 N1 C A1222 9.784 92.691 100.004 1.00 42.21 N
ATOM 15 C2 C A1222 9.274 93.964 100.302 1.00 41.81 C
ATOM 16 O2 C A1222 8.253 94.059 100.997 1.00 40.25 O
ATOM 17 N3 C A1222 9.910 95.057 99.827 1.00 42.76 N
ATOM 18 C4 C A1222 11.022 94.922 99.095 1.00 43.08 C
ATOM 19 N4 C A1222 11.637 96.035 98.667 1.00 42.65 N
ATOM 20 C5 C A1222 11.561 93.644 98.774 1.00 42.50 C
ATOM 21 C6 C A1222 10.917 92.565 99.246 1.00 43.06 C
ATOM 22 P U A1223 7.634 89.318 96.508 1.00 36.11 P
ATOM 23 OP1 U A1223 6.774 88.185 96.138 1.00 38.21 O
ATOM 24 OP2 U A1223 8.891 89.534 95.777 1.00 34.43 O
ATOM 25 O5' U A1223 6.760 90.640 96.511 1.00 33.82 O
TER
ATOM 1 O3' A B1051 6.082 106.199 98.031 1.00 46.36 O
ATOM 2 P G B1052 6.621 106.128 99.522 1.00 46.62 P
ATOM 3 OP1 G B1052 6.006 107.294 100.188 1.00 48.55 O
ATOM 4 OP2 G B1052 8.096 105.986 99.510 1.00 44.94 O
ATOM 5 O5' G B1052 5.973 104.780 100.070 1.00 46.12 O
ATOM 6 C5' G B1052 4.570 104.712 100.341 1.00 45.47 C
ATOM 7 C4' G B1052 4.148 103.306 100.689 1.00 46.77 C
ATOM 8 O4' G B1052 4.518 102.391 99.628 1.00 46.23 O
ATOM 9 C3' G B1052 4.745 102.668 101.928 1.00 46.52 C
ATOM 10 O3' G B1052 4.121 103.084 103.126 1.00 46.25 O
ATOM 11 C2' G B1052 4.483 101.194 101.671 1.00 47.76 C
ATOM 12 O2' G B1052 3.115 100.866 101.848 1.00 50.14 O
ATOM 13 C1' G B1052 4.794 101.109 100.180 1.00 46.55 C
ATOM 14 N9 G B1052 6.188 100.784 99.894 1.00 44.92 N
ATOM 15 C8 G B1052 7.158 101.665 99.492 1.00 45.29 C
ATOM 16 N7 G B1052 8.309 101.095 99.269 1.00 46.30 N
ATOM 17 C5 G B1052 8.097 99.756 99.555 1.00 45.18 C
ATOM 18 C6 G B1052 8.991 98.660 99.492 1.00 44.88 C
ATOM 19 O6 G B1052 10.190 98.663 99.183 1.00 43.26 O
ATOM 20 N1 G B1052 8.362 97.469 99.835 1.00 45.61 N
ATOM 21 C2 G B1052 7.048 97.350 100.198 1.00 45.57 C
ATOM 22 N2 G B1052 6.631 96.105 100.450 1.00 43.88 N
ATOM 23 N3 G B1052 6.206 98.373 100.291 1.00 45.78 N
ATOM 24 C4 G B1052 6.794 99.541 99.948 1.00 44.89 C
ATOM 25 P G B1053 4.976 103.082 104.478 1.00 45.82 P
ATOM 26 OP1 G B1053 4.064 103.457 105.582 1.00 44.39 O
ATOM 27 OP2 G B1053 6.171 103.915 104.202 1.00 47.73 O
ATOM 28 O5' G B1053 5.460 101.562 104.633 1.00 44.57 O
TER
Atoms:
C2: (9.274,93.964,100.302)
OP1: (12.910,87.831,97.181)
OP2: (13.305,90.357,97.136)
C4: (11.022,94.922,99.095)
O5': (11.419,89.436,98.373)
C3': (8.752,90.014,98.744)
C1': (9.074,91.505,100.515)
O4': (10.000,90.432,100.637)
C5': (10.736,88.575,99.268)
P: (12.883,89.130,97.869)
O2: (8.253,94.059,100.997)
C4': (9.554,89.315,99.823)
C2': (7.983,91.042,99.549)
O2': (6.927,90.428,100.265)
N1: (9.784,92.691,100.004)
N3: (9.910,95.057,99.827)
N4: (11.637,96.035,98.667)
C6: (10.917,92.565,99.246)
C5: (11.561,93.644,98.774)
O3': (7.925,89.101,98.058)
OP1: (12.910,87.831,97.181)
OP2: (13.305,90.357,97.136)
C4: (11.022,94.922,99.095)
O5': (11.419,89.436,98.373)
C3': (8.752,90.014,98.744)
C1': (9.074,91.505,100.515)
O4': (10.000,90.432,100.637)
C5': (10.736,88.575,99.268)
P: (12.883,89.130,97.869)
O2: (8.253,94.059,100.997)
C4': (9.554,89.315,99.823)
C2': (7.983,91.042,99.549)
O2': (6.927,90.428,100.265)
N1: (9.784,92.691,100.004)
N3: (9.910,95.057,99.827)
N4: (11.637,96.035,98.667)
C6: (10.917,92.565,99.246)
C5: (11.561,93.644,98.774)
O3': (7.925,89.101,98.058)
OP1: (6.006,107.294,100.188)
OP2: (8.096,105.986,99.510)
C3': (4.745,102.668,101.928)
C1': (4.794,101.109,100.180)
C5': (4.570,104.712,100.341)
O6: (10.190,98.663,99.183)
O4': (4.518,102.391,99.628)
C8: (7.158,101.665,99.492)
C2: (7.048,97.350,100.198)
C6: (8.991,98.660,99.492)
C5: (8.097,99.756,99.555)
C4: (6.794,99.541,99.948)
P: (6.621,106.128,99.522)
C4': (4.148,103.306,100.689)
C2': (4.483,101.194,101.671)
O2': (3.115,100.866,101.848)
N1: (8.362,97.469,99.835)
N2: (6.631,96.105,100.450)
N3: (6.206,98.373,100.291)
N7: (8.309,101.095,99.269)
N9: (6.188,100.784,99.894)
O5': (5.973,104.780,100.070)
O3': (4.121,103.084,103.126)
OP2: (8.096,105.986,99.510)
C3': (4.745,102.668,101.928)
C1': (4.794,101.109,100.180)
C5': (4.570,104.712,100.341)
O6: (10.190,98.663,99.183)
O4': (4.518,102.391,99.628)
C8: (7.158,101.665,99.492)
C2: (7.048,97.350,100.198)
C6: (8.991,98.660,99.492)
C5: (8.097,99.756,99.555)
C4: (6.794,99.541,99.948)
P: (6.621,106.128,99.522)
C4': (4.148,103.306,100.689)
C2': (4.483,101.194,101.671)
O2': (3.115,100.866,101.848)
N1: (8.362,97.469,99.835)
N2: (6.631,96.105,100.450)
N3: (6.206,98.373,100.291)
N7: (8.309,101.095,99.269)
N9: (6.188,100.784,99.894)
O5': (5.973,104.780,100.070)
O3': (4.121,103.084,103.126)
Image (generated by PyMOL):