Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NDB:M35:M48
Extra
PDB:
ATOM 1 O3' U A 34 -44.611 39.059 -40.805 1.00 74.68 O
ATOM 2 P C A 35 -45.401 39.168 -39.409 1.00 73.45 P
ATOM 3 OP1 C A 35 -44.627 40.039 -38.486 1.00 72.29 O
ATOM 4 OP2 C A 35 -45.706 37.782 -39.000 1.00 73.07 O
ATOM 5 O5' C A 35 -46.790 39.863 -39.810 1.00 72.49 O
ATOM 6 C5' C A 35 -46.894 41.281 -39.904 1.00 73.34 C
ATOM 7 C4' C A 35 -48.296 41.641 -40.338 1.00 74.17 C
ATOM 8 O4' C A 35 -48.664 40.731 -41.408 1.00 74.17 O
ATOM 9 C3' C A 35 -49.396 41.431 -39.291 1.00 72.80 C
ATOM 10 O3' C A 35 -49.584 42.509 -38.396 1.00 71.42 O
ATOM 11 C2' C A 35 -50.620 41.236 -40.153 1.00 72.76 C
ATOM 12 O2' C A 35 -51.105 42.456 -40.603 1.00 74.85 O
ATOM 13 C1' C A 35 -50.065 40.471 -41.341 1.00 73.58 C
ATOM 14 N1 C A 35 -50.353 39.004 -41.206 1.00 71.87 N
ATOM 15 C2 C A 35 -51.660 38.542 -41.386 1.00 71.78 C
ATOM 16 O2 C A 35 -52.571 39.331 -41.652 1.00 73.88 O
ATOM 17 N3 C A 35 -51.908 37.235 -41.259 1.00 71.02 N
ATOM 18 C4 C A 35 -50.914 36.406 -40.970 1.00 70.75 C
ATOM 19 N4 C A 35 -51.200 35.105 -40.847 1.00 70.34 N
ATOM 20 C5 C A 35 -49.582 36.853 -40.788 1.00 70.10 C
ATOM 21 C6 C A 35 -49.348 38.152 -40.910 1.00 70.16 C
ATOM 22 P U A 36 -49.509 42.141 -36.855 1.00 70.82 P
ATOM 23 OP1 U A 36 -49.182 43.299 -36.014 1.00 73.32 O
ATOM 24 OP2 U A 36 -48.600 40.991 -36.744 1.00 72.55 O
ATOM 25 O5' U A 36 -51.013 41.680 -36.571 1.00 72.23 O
TER
ATOM 1 O3' A B 47 -62.264 31.420 -41.838 1.00 74.32 O
ATOM 2 P G B 48 -61.697 31.363 -43.345 1.00 77.71 P
ATOM 3 OP1 G B 48 -62.909 31.181 -44.149 1.00 79.44 O
ATOM 4 OP2 G B 48 -60.582 30.375 -43.492 1.00 76.79 O
ATOM 5 O5' G B 48 -61.106 32.825 -43.621 1.00 77.02 O
ATOM 6 C5' G B 48 -62.028 33.861 -43.827 1.00 78.60 C
ATOM 7 C4' G B 48 -61.391 35.163 -43.442 1.00 79.12 C
ATOM 8 O4' G B 48 -60.571 34.963 -42.267 1.00 77.71 O
ATOM 9 C3' G B 48 -60.339 35.613 -44.433 1.00 80.58 C
ATOM 10 O3' G B 48 -60.936 36.067 -45.636 1.00 82.90 O
ATOM 11 C2' G B 48 -59.645 36.692 -43.593 1.00 79.19 C
ATOM 12 O2' G B 48 -60.447 37.837 -43.338 1.00 79.03 O
ATOM 13 C1' G B 48 -59.475 35.876 -42.318 1.00 74.53 C
ATOM 14 N9 G B 48 -58.223 35.133 -42.207 1.00 71.79 N
ATOM 15 C8 G B 48 -58.024 33.762 -42.175 1.00 70.93 C
ATOM 16 N7 G B 48 -56.766 33.397 -42.027 1.00 69.08 N
ATOM 17 C5 G B 48 -56.109 34.621 -41.953 1.00 69.94 C
ATOM 18 C6 G B 48 -54.740 34.907 -41.799 1.00 69.21 C
ATOM 19 O6 G B 48 -53.809 34.110 -41.690 1.00 68.02 O
ATOM 20 N1 G B 48 -54.487 36.268 -41.770 1.00 69.53 N
ATOM 21 C2 G B 48 -55.446 37.231 -41.877 1.00 70.39 C
ATOM 22 N2 G B 48 -55.012 38.490 -41.832 1.00 71.61 N
ATOM 23 N3 G B 48 -56.731 36.992 -42.033 1.00 70.36 N
ATOM 24 C4 G B 48 -56.986 35.680 -42.060 1.00 70.13 C
ATOM 25 P A B 49 -60.058 36.103 -46.969 1.00 84.15 P
ATOM 26 OP1 A B 49 -61.004 36.470 -48.050 1.00 87.65 O
ATOM 27 OP2 A B 49 -59.212 34.873 -47.083 1.00 80.33 O
ATOM 28 O5' A B 49 -59.197 37.431 -46.734 1.00 83.01 O
TER
ATOM 2 P C A 35 -45.401 39.168 -39.409 1.00 73.45 P
ATOM 3 OP1 C A 35 -44.627 40.039 -38.486 1.00 72.29 O
ATOM 4 OP2 C A 35 -45.706 37.782 -39.000 1.00 73.07 O
ATOM 5 O5' C A 35 -46.790 39.863 -39.810 1.00 72.49 O
ATOM 6 C5' C A 35 -46.894 41.281 -39.904 1.00 73.34 C
ATOM 7 C4' C A 35 -48.296 41.641 -40.338 1.00 74.17 C
ATOM 8 O4' C A 35 -48.664 40.731 -41.408 1.00 74.17 O
ATOM 9 C3' C A 35 -49.396 41.431 -39.291 1.00 72.80 C
ATOM 10 O3' C A 35 -49.584 42.509 -38.396 1.00 71.42 O
ATOM 11 C2' C A 35 -50.620 41.236 -40.153 1.00 72.76 C
ATOM 12 O2' C A 35 -51.105 42.456 -40.603 1.00 74.85 O
ATOM 13 C1' C A 35 -50.065 40.471 -41.341 1.00 73.58 C
ATOM 14 N1 C A 35 -50.353 39.004 -41.206 1.00 71.87 N
ATOM 15 C2 C A 35 -51.660 38.542 -41.386 1.00 71.78 C
ATOM 16 O2 C A 35 -52.571 39.331 -41.652 1.00 73.88 O
ATOM 17 N3 C A 35 -51.908 37.235 -41.259 1.00 71.02 N
ATOM 18 C4 C A 35 -50.914 36.406 -40.970 1.00 70.75 C
ATOM 19 N4 C A 35 -51.200 35.105 -40.847 1.00 70.34 N
ATOM 20 C5 C A 35 -49.582 36.853 -40.788 1.00 70.10 C
ATOM 21 C6 C A 35 -49.348 38.152 -40.910 1.00 70.16 C
ATOM 22 P U A 36 -49.509 42.141 -36.855 1.00 70.82 P
ATOM 23 OP1 U A 36 -49.182 43.299 -36.014 1.00 73.32 O
ATOM 24 OP2 U A 36 -48.600 40.991 -36.744 1.00 72.55 O
ATOM 25 O5' U A 36 -51.013 41.680 -36.571 1.00 72.23 O
TER
ATOM 1 O3' A B 47 -62.264 31.420 -41.838 1.00 74.32 O
ATOM 2 P G B 48 -61.697 31.363 -43.345 1.00 77.71 P
ATOM 3 OP1 G B 48 -62.909 31.181 -44.149 1.00 79.44 O
ATOM 4 OP2 G B 48 -60.582 30.375 -43.492 1.00 76.79 O
ATOM 5 O5' G B 48 -61.106 32.825 -43.621 1.00 77.02 O
ATOM 6 C5' G B 48 -62.028 33.861 -43.827 1.00 78.60 C
ATOM 7 C4' G B 48 -61.391 35.163 -43.442 1.00 79.12 C
ATOM 8 O4' G B 48 -60.571 34.963 -42.267 1.00 77.71 O
ATOM 9 C3' G B 48 -60.339 35.613 -44.433 1.00 80.58 C
ATOM 10 O3' G B 48 -60.936 36.067 -45.636 1.00 82.90 O
ATOM 11 C2' G B 48 -59.645 36.692 -43.593 1.00 79.19 C
ATOM 12 O2' G B 48 -60.447 37.837 -43.338 1.00 79.03 O
ATOM 13 C1' G B 48 -59.475 35.876 -42.318 1.00 74.53 C
ATOM 14 N9 G B 48 -58.223 35.133 -42.207 1.00 71.79 N
ATOM 15 C8 G B 48 -58.024 33.762 -42.175 1.00 70.93 C
ATOM 16 N7 G B 48 -56.766 33.397 -42.027 1.00 69.08 N
ATOM 17 C5 G B 48 -56.109 34.621 -41.953 1.00 69.94 C
ATOM 18 C6 G B 48 -54.740 34.907 -41.799 1.00 69.21 C
ATOM 19 O6 G B 48 -53.809 34.110 -41.690 1.00 68.02 O
ATOM 20 N1 G B 48 -54.487 36.268 -41.770 1.00 69.53 N
ATOM 21 C2 G B 48 -55.446 37.231 -41.877 1.00 70.39 C
ATOM 22 N2 G B 48 -55.012 38.490 -41.832 1.00 71.61 N
ATOM 23 N3 G B 48 -56.731 36.992 -42.033 1.00 70.36 N
ATOM 24 C4 G B 48 -56.986 35.680 -42.060 1.00 70.13 C
ATOM 25 P A B 49 -60.058 36.103 -46.969 1.00 84.15 P
ATOM 26 OP1 A B 49 -61.004 36.470 -48.050 1.00 87.65 O
ATOM 27 OP2 A B 49 -59.212 34.873 -47.083 1.00 80.33 O
ATOM 28 O5' A B 49 -59.197 37.431 -46.734 1.00 83.01 O
TER
Atoms:
C2: (-51.660,38.542,-41.386)
OP1: (-44.627,40.039,-38.486)
OP2: (-45.706,37.782,-39.000)
C4: (-50.914,36.406,-40.970)
O5': (-46.790,39.863,-39.810)
C3': (-49.396,41.431,-39.291)
C1': (-50.065,40.471,-41.341)
O4': (-48.664,40.731,-41.408)
C5': (-46.894,41.281,-39.904)
P: (-45.401,39.168,-39.409)
O2: (-52.571,39.331,-41.652)
C4': (-48.296,41.641,-40.338)
C2': (-50.620,41.236,-40.153)
O2': (-51.105,42.456,-40.603)
N1: (-50.353,39.004,-41.206)
N3: (-51.908,37.235,-41.259)
N4: (-51.200,35.105,-40.847)
C6: (-49.348,38.152,-40.910)
C5: (-49.582,36.853,-40.788)
O3': (-49.584,42.509,-38.396)
OP1: (-44.627,40.039,-38.486)
OP2: (-45.706,37.782,-39.000)
C4: (-50.914,36.406,-40.970)
O5': (-46.790,39.863,-39.810)
C3': (-49.396,41.431,-39.291)
C1': (-50.065,40.471,-41.341)
O4': (-48.664,40.731,-41.408)
C5': (-46.894,41.281,-39.904)
P: (-45.401,39.168,-39.409)
O2: (-52.571,39.331,-41.652)
C4': (-48.296,41.641,-40.338)
C2': (-50.620,41.236,-40.153)
O2': (-51.105,42.456,-40.603)
N1: (-50.353,39.004,-41.206)
N3: (-51.908,37.235,-41.259)
N4: (-51.200,35.105,-40.847)
C6: (-49.348,38.152,-40.910)
C5: (-49.582,36.853,-40.788)
O3': (-49.584,42.509,-38.396)
OP1: (-62.909,31.181,-44.149)
OP2: (-60.582,30.375,-43.492)
C3': (-60.339,35.613,-44.433)
C1': (-59.475,35.876,-42.318)
C5': (-62.028,33.861,-43.827)
O6: (-53.809,34.110,-41.690)
O4': (-60.571,34.963,-42.267)
C8: (-58.024,33.762,-42.175)
C2: (-55.446,37.231,-41.877)
C6: (-54.740,34.907,-41.799)
C5: (-56.109,34.621,-41.953)
C4: (-56.986,35.680,-42.060)
P: (-61.697,31.363,-43.345)
C4': (-61.391,35.163,-43.442)
C2': (-59.645,36.692,-43.593)
O2': (-60.447,37.837,-43.338)
N1: (-54.487,36.268,-41.770)
N2: (-55.012,38.490,-41.832)
N3: (-56.731,36.992,-42.033)
N7: (-56.766,33.397,-42.027)
N9: (-58.223,35.133,-42.207)
O5': (-61.106,32.825,-43.621)
O3': (-60.936,36.067,-45.636)
OP2: (-60.582,30.375,-43.492)
C3': (-60.339,35.613,-44.433)
C1': (-59.475,35.876,-42.318)
C5': (-62.028,33.861,-43.827)
O6: (-53.809,34.110,-41.690)
O4': (-60.571,34.963,-42.267)
C8: (-58.024,33.762,-42.175)
C2: (-55.446,37.231,-41.877)
C6: (-54.740,34.907,-41.799)
C5: (-56.109,34.621,-41.953)
C4: (-56.986,35.680,-42.060)
P: (-61.697,31.363,-43.345)
C4': (-61.391,35.163,-43.442)
C2': (-59.645,36.692,-43.593)
O2': (-60.447,37.837,-43.338)
N1: (-54.487,36.268,-41.770)
N2: (-55.012,38.490,-41.832)
N3: (-56.731,36.992,-42.033)
N7: (-56.766,33.397,-42.027)
N9: (-58.223,35.133,-42.207)
O5': (-61.106,32.825,-43.621)
O3': (-60.936,36.067,-45.636)
Image (generated by PyMOL):