Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8T:A2507:A2561
Extra
PDB:
ATOM 1 O3' U A2506 -52.968 97.942 177.303 1.00 0.01 O
ATOM 2 P C A2507 -53.662 96.520 177.053 1.00 0.01 P
ATOM 3 OP1 C A2507 -53.612 95.767 178.320 1.00 0.01 O
ATOM 4 OP2 C A2507 -53.022 95.937 175.865 1.00 0.01 O
ATOM 5 O5' C A2507 -55.157 96.902 176.705 1.00 0.01 O
ATOM 6 C5' C A2507 -55.908 97.702 177.560 1.00 0.01 C
ATOM 7 C4' C A2507 -56.606 98.762 176.791 1.00 0.01 C
ATOM 8 O4' C A2507 -55.701 99.336 175.831 1.00 0.01 O
ATOM 9 C3' C A2507 -57.768 98.304 175.938 1.00 0.01 C
ATOM 10 O3' C A2507 -58.936 98.067 176.690 1.00 0.01 O
ATOM 11 C2' C A2507 -57.898 99.452 174.953 1.00 0.01 C
ATOM 12 O2' C A2507 -58.505 100.572 175.558 1.00 0.01 O
ATOM 13 C1' C A2507 -56.441 99.793 174.711 1.00 0.01 C
ATOM 14 N1 C A2507 -55.919 99.166 173.476 1.00 0.01 N
ATOM 15 C2 C A2507 -56.557 99.494 172.299 1.00 0.01 C
ATOM 16 O2 C A2507 -57.513 100.242 172.389 1.00 0.01 O
ATOM 17 N3 C A2507 -56.129 99.008 171.130 1.00 0.01 N
ATOM 18 C4 C A2507 -55.082 98.212 171.117 1.00 0.01 C
ATOM 19 N4 C A2507 -54.679 97.730 169.964 1.00 0.01 N
ATOM 20 C5 C A2507 -54.392 97.846 172.285 1.00 0.01 C
ATOM 21 C6 C A2507 -54.835 98.342 173.443 1.00 0.01 C
ATOM 22 P A A2508 -60.129 97.192 176.089 1.00 0.01 P
ATOM 23 OP1 A A2508 -61.176 97.121 177.129 1.00 0.01 O
ATOM 24 OP2 A A2508 -59.538 95.918 175.585 1.00 0.01 O
ATOM 25 O5' A A2508 -60.632 98.083 174.871 1.00 0.01 O
TER
ATOM 1 O3' U B2560 -59.441 98.903 158.710 1.00 0.02 O
ATOM 2 P G B2561 -58.621 100.215 159.009 1.00 0.01 P
ATOM 3 OP1 G B2561 -58.761 101.082 157.812 1.00 0.01 O
ATOM 4 OP2 G B2561 -57.247 99.780 159.455 1.00 0.01 O
ATOM 5 O5' G B2561 -59.404 100.840 160.233 1.00 0.01 O
ATOM 6 C5' G B2561 -58.776 101.767 161.089 1.00 0.01 C
ATOM 7 C4' G B2561 -59.630 102.030 162.282 1.00 0.01 C
ATOM 8 O4' G B2561 -59.945 100.782 162.928 1.00 0.01 O
ATOM 9 C3' G B2561 -59.009 102.853 163.375 1.00 0.01 C
ATOM 10 O3' G B2561 -59.081 104.224 163.119 1.00 0.01 O
ATOM 11 C2' G B2561 -59.821 102.436 164.564 1.00 0.01 C
ATOM 12 O2' G B2561 -61.119 102.996 164.467 1.00 0.01 O
ATOM 13 C1' G B2561 -59.927 100.948 164.314 1.00 0.01 C
ATOM 14 N9 G B2561 -58.769 100.210 164.826 1.00 0.01 N
ATOM 15 C8 G B2561 -57.961 99.457 164.023 1.00 0.01 C
ATOM 16 N7 G B2561 -57.016 98.869 164.672 1.00 0.01 N
ATOM 17 C5 G B2561 -57.209 99.249 165.988 1.00 0.01 C
ATOM 18 C6 G B2561 -56.477 98.919 167.151 1.00 0.01 C
ATOM 19 O6 G B2561 -55.474 98.220 167.284 1.00 0.01 O
ATOM 20 N1 G B2561 -57.023 99.521 168.254 1.00 0.01 N
ATOM 21 C2 G B2561 -58.100 100.338 168.263 1.00 0.01 C
ATOM 22 N2 G B2561 -58.426 100.805 169.460 1.00 0.01 N
ATOM 23 N3 G B2561 -58.796 100.665 167.209 1.00 0.01 N
ATOM 24 C4 G B2561 -58.297 100.084 166.105 1.00 0.01 C
ATOM 25 P G B2562 -57.866 105.149 163.527 1.00 0.07 P
ATOM 26 OP1 G B2562 -58.087 106.453 162.881 1.00 0.07 O
ATOM 27 OP2 G B2562 -56.639 104.402 163.218 1.00 0.07 O
ATOM 28 O5' G B2562 -58.041 105.269 165.106 1.00 0.07 O
TER
ATOM 2 P C A2507 -53.662 96.520 177.053 1.00 0.01 P
ATOM 3 OP1 C A2507 -53.612 95.767 178.320 1.00 0.01 O
ATOM 4 OP2 C A2507 -53.022 95.937 175.865 1.00 0.01 O
ATOM 5 O5' C A2507 -55.157 96.902 176.705 1.00 0.01 O
ATOM 6 C5' C A2507 -55.908 97.702 177.560 1.00 0.01 C
ATOM 7 C4' C A2507 -56.606 98.762 176.791 1.00 0.01 C
ATOM 8 O4' C A2507 -55.701 99.336 175.831 1.00 0.01 O
ATOM 9 C3' C A2507 -57.768 98.304 175.938 1.00 0.01 C
ATOM 10 O3' C A2507 -58.936 98.067 176.690 1.00 0.01 O
ATOM 11 C2' C A2507 -57.898 99.452 174.953 1.00 0.01 C
ATOM 12 O2' C A2507 -58.505 100.572 175.558 1.00 0.01 O
ATOM 13 C1' C A2507 -56.441 99.793 174.711 1.00 0.01 C
ATOM 14 N1 C A2507 -55.919 99.166 173.476 1.00 0.01 N
ATOM 15 C2 C A2507 -56.557 99.494 172.299 1.00 0.01 C
ATOM 16 O2 C A2507 -57.513 100.242 172.389 1.00 0.01 O
ATOM 17 N3 C A2507 -56.129 99.008 171.130 1.00 0.01 N
ATOM 18 C4 C A2507 -55.082 98.212 171.117 1.00 0.01 C
ATOM 19 N4 C A2507 -54.679 97.730 169.964 1.00 0.01 N
ATOM 20 C5 C A2507 -54.392 97.846 172.285 1.00 0.01 C
ATOM 21 C6 C A2507 -54.835 98.342 173.443 1.00 0.01 C
ATOM 22 P A A2508 -60.129 97.192 176.089 1.00 0.01 P
ATOM 23 OP1 A A2508 -61.176 97.121 177.129 1.00 0.01 O
ATOM 24 OP2 A A2508 -59.538 95.918 175.585 1.00 0.01 O
ATOM 25 O5' A A2508 -60.632 98.083 174.871 1.00 0.01 O
TER
ATOM 1 O3' U B2560 -59.441 98.903 158.710 1.00 0.02 O
ATOM 2 P G B2561 -58.621 100.215 159.009 1.00 0.01 P
ATOM 3 OP1 G B2561 -58.761 101.082 157.812 1.00 0.01 O
ATOM 4 OP2 G B2561 -57.247 99.780 159.455 1.00 0.01 O
ATOM 5 O5' G B2561 -59.404 100.840 160.233 1.00 0.01 O
ATOM 6 C5' G B2561 -58.776 101.767 161.089 1.00 0.01 C
ATOM 7 C4' G B2561 -59.630 102.030 162.282 1.00 0.01 C
ATOM 8 O4' G B2561 -59.945 100.782 162.928 1.00 0.01 O
ATOM 9 C3' G B2561 -59.009 102.853 163.375 1.00 0.01 C
ATOM 10 O3' G B2561 -59.081 104.224 163.119 1.00 0.01 O
ATOM 11 C2' G B2561 -59.821 102.436 164.564 1.00 0.01 C
ATOM 12 O2' G B2561 -61.119 102.996 164.467 1.00 0.01 O
ATOM 13 C1' G B2561 -59.927 100.948 164.314 1.00 0.01 C
ATOM 14 N9 G B2561 -58.769 100.210 164.826 1.00 0.01 N
ATOM 15 C8 G B2561 -57.961 99.457 164.023 1.00 0.01 C
ATOM 16 N7 G B2561 -57.016 98.869 164.672 1.00 0.01 N
ATOM 17 C5 G B2561 -57.209 99.249 165.988 1.00 0.01 C
ATOM 18 C6 G B2561 -56.477 98.919 167.151 1.00 0.01 C
ATOM 19 O6 G B2561 -55.474 98.220 167.284 1.00 0.01 O
ATOM 20 N1 G B2561 -57.023 99.521 168.254 1.00 0.01 N
ATOM 21 C2 G B2561 -58.100 100.338 168.263 1.00 0.01 C
ATOM 22 N2 G B2561 -58.426 100.805 169.460 1.00 0.01 N
ATOM 23 N3 G B2561 -58.796 100.665 167.209 1.00 0.01 N
ATOM 24 C4 G B2561 -58.297 100.084 166.105 1.00 0.01 C
ATOM 25 P G B2562 -57.866 105.149 163.527 1.00 0.07 P
ATOM 26 OP1 G B2562 -58.087 106.453 162.881 1.00 0.07 O
ATOM 27 OP2 G B2562 -56.639 104.402 163.218 1.00 0.07 O
ATOM 28 O5' G B2562 -58.041 105.269 165.106 1.00 0.07 O
TER
Atoms:
C2: (-56.557,99.494,172.299)
OP1: (-53.612,95.767,178.320)
OP2: (-53.022,95.937,175.865)
C4: (-55.082,98.212,171.117)
O5': (-55.157,96.902,176.705)
C3': (-57.768,98.304,175.938)
C1': (-56.441,99.793,174.711)
O4': (-55.701,99.336,175.831)
C5': (-55.908,97.702,177.560)
P: (-53.662,96.520,177.053)
O2: (-57.513,100.242,172.389)
C4': (-56.606,98.762,176.791)
C2': (-57.898,99.452,174.953)
O2': (-58.505,100.572,175.558)
N1: (-55.919,99.166,173.476)
N3: (-56.129,99.008,171.130)
N4: (-54.679,97.730,169.964)
C6: (-54.835,98.342,173.443)
C5: (-54.392,97.846,172.285)
O3': (-58.936,98.067,176.690)
OP1: (-53.612,95.767,178.320)
OP2: (-53.022,95.937,175.865)
C4: (-55.082,98.212,171.117)
O5': (-55.157,96.902,176.705)
C3': (-57.768,98.304,175.938)
C1': (-56.441,99.793,174.711)
O4': (-55.701,99.336,175.831)
C5': (-55.908,97.702,177.560)
P: (-53.662,96.520,177.053)
O2: (-57.513,100.242,172.389)
C4': (-56.606,98.762,176.791)
C2': (-57.898,99.452,174.953)
O2': (-58.505,100.572,175.558)
N1: (-55.919,99.166,173.476)
N3: (-56.129,99.008,171.130)
N4: (-54.679,97.730,169.964)
C6: (-54.835,98.342,173.443)
C5: (-54.392,97.846,172.285)
O3': (-58.936,98.067,176.690)
OP1: (-58.761,101.082,157.812)
OP2: (-57.247,99.780,159.455)
C3': (-59.009,102.853,163.375)
C1': (-59.927,100.948,164.314)
C5': (-58.776,101.767,161.089)
O6: (-55.474,98.220,167.284)
O4': (-59.945,100.782,162.928)
C8: (-57.961,99.457,164.023)
C2: (-58.100,100.338,168.263)
C6: (-56.477,98.919,167.151)
C5: (-57.209,99.249,165.988)
C4: (-58.297,100.084,166.105)
P: (-58.621,100.215,159.009)
C4': (-59.630,102.030,162.282)
C2': (-59.821,102.436,164.564)
O2': (-61.119,102.996,164.467)
N1: (-57.023,99.521,168.254)
N2: (-58.426,100.805,169.460)
N3: (-58.796,100.665,167.209)
N7: (-57.016,98.869,164.672)
N9: (-58.769,100.210,164.826)
O5': (-59.404,100.840,160.233)
O3': (-59.081,104.224,163.119)
OP2: (-57.247,99.780,159.455)
C3': (-59.009,102.853,163.375)
C1': (-59.927,100.948,164.314)
C5': (-58.776,101.767,161.089)
O6: (-55.474,98.220,167.284)
O4': (-59.945,100.782,162.928)
C8: (-57.961,99.457,164.023)
C2: (-58.100,100.338,168.263)
C6: (-56.477,98.919,167.151)
C5: (-57.209,99.249,165.988)
C4: (-58.297,100.084,166.105)
P: (-58.621,100.215,159.009)
C4': (-59.630,102.030,162.282)
C2': (-59.821,102.436,164.564)
O2': (-61.119,102.996,164.467)
N1: (-57.023,99.521,168.254)
N2: (-58.426,100.805,169.460)
N3: (-58.796,100.665,167.209)
N7: (-57.016,98.869,164.672)
N9: (-58.769,100.210,164.826)
O5': (-59.404,100.840,160.233)
O3': (-59.081,104.224,163.119)
Image (generated by PyMOL):