Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:Y39:Y7
Extra
PDB:
ATOM 1 O3' C A 38 28.907 10.166 52.350 1.00 34.34 O
ATOM 2 P C A 39 29.759 10.135 53.705 1.00 34.40 P
ATOM 3 OP1 C A 39 30.310 11.493 53.912 1.00 34.54 O
ATOM 4 OP2 C A 39 30.662 8.963 53.647 1.00 34.81 O
ATOM 5 O5' C A 39 28.660 9.857 54.832 1.00 33.77 O
ATOM 6 C5' C A 39 27.724 10.873 55.165 1.00 33.30 C
ATOM 7 C4' C A 39 26.648 10.329 56.085 1.00 32.90 C
ATOM 8 O4' C A 39 25.964 9.223 55.444 1.00 32.92 O
ATOM 9 C3' C A 39 27.155 9.705 57.372 1.00 32.98 C
ATOM 10 O3' C A 39 27.511 10.700 58.320 1.00 33.37 O
ATOM 11 C2' C A 39 25.923 8.908 57.783 1.00 32.23 C
ATOM 12 O2' C A 39 24.890 9.718 58.306 1.00 30.94 O
ATOM 13 C1' C A 39 25.502 8.323 56.437 1.00 32.69 C
ATOM 14 N1 C A 39 26.078 6.965 56.202 1.00 33.10 N
ATOM 15 C2 C A 39 25.461 5.854 56.787 1.00 33.30 C
ATOM 16 O2 C A 39 24.447 6.023 57.473 1.00 33.85 O
ATOM 17 N3 C A 39 25.991 4.622 56.586 1.00 33.23 N
ATOM 18 C4 C A 39 27.091 4.484 55.845 1.00 33.34 C
ATOM 19 N4 C A 39 27.578 3.250 55.676 1.00 32.95 N
ATOM 20 C5 C A 39 27.741 5.605 55.245 1.00 33.38 C
ATOM 21 C6 C A 39 27.205 6.814 55.448 1.00 32.92 C
ATOM 22 P C A 40 28.713 10.421 59.337 1.00 33.99 P
ATOM 23 OP1 C A 40 28.954 11.661 60.107 1.00 34.27 O
ATOM 24 OP2 C A 40 29.821 9.799 58.578 1.00 33.69 O
ATOM 25 O5' C A 40 28.095 9.317 60.319 1.00 34.12 O
TER
ATOM 1 O3' G B 6 23.836 -5.758 62.028 1.00 33.77 O
ATOM 2 P G B 7 22.697 -5.438 60.947 1.00 32.96 P
ATOM 3 OP1 G B 7 21.545 -6.321 61.226 1.00 33.44 O
ATOM 4 OP2 G B 7 23.306 -5.424 59.601 1.00 33.43 O
ATOM 5 O5' G B 7 22.289 -3.938 61.311 1.00 32.54 O
ATOM 6 C5' G B 7 21.890 -3.614 62.633 1.00 31.91 C
ATOM 7 C4' G B 7 21.723 -2.114 62.744 1.00 31.77 C
ATOM 8 O4' G B 7 23.017 -1.483 62.581 1.00 31.54 O
ATOM 9 C3' G B 7 20.904 -1.497 61.624 1.00 32.15 C
ATOM 10 O3' G B 7 19.513 -1.659 61.850 1.00 32.62 O
ATOM 11 C2' G B 7 21.347 -0.047 61.730 1.00 31.86 C
ATOM 12 O2' G B 7 20.808 0.586 62.873 1.00 33.03 O
ATOM 13 C1' G B 7 22.846 -0.243 61.919 1.00 30.94 C
ATOM 14 N9 G B 7 23.632 -0.232 60.686 1.00 30.42 N
ATOM 15 C8 G B 7 24.272 -1.297 60.099 1.00 29.89 C
ATOM 16 N7 G B 7 24.923 -0.979 59.013 1.00 29.95 N
ATOM 17 C5 G B 7 24.708 0.385 58.871 1.00 30.04 C
ATOM 18 C6 G B 7 25.168 1.285 57.878 1.00 29.74 C
ATOM 19 O6 G B 7 25.878 1.045 56.893 1.00 29.13 O
ATOM 20 N1 G B 7 24.718 2.584 58.107 1.00 29.34 N
ATOM 21 C2 G B 7 23.923 2.968 59.163 1.00 29.48 C
ATOM 22 N2 G B 7 23.592 4.268 59.216 1.00 28.83 N
ATOM 23 N3 G B 7 23.490 2.135 60.103 1.00 29.71 N
ATOM 24 C4 G B 7 23.918 0.863 59.895 1.00 30.02 C
ATOM 25 P G B 8 18.551 -1.929 60.601 1.00 33.28 P
ATOM 26 OP1 G B 8 17.213 -2.267 61.128 1.00 32.89 O
ATOM 27 OP2 G B 8 19.235 -2.869 59.683 1.00 32.34 O
ATOM 28 O5' G B 8 18.503 -0.499 59.880 1.00 33.14 O
TER
ATOM 2 P C A 39 29.759 10.135 53.705 1.00 34.40 P
ATOM 3 OP1 C A 39 30.310 11.493 53.912 1.00 34.54 O
ATOM 4 OP2 C A 39 30.662 8.963 53.647 1.00 34.81 O
ATOM 5 O5' C A 39 28.660 9.857 54.832 1.00 33.77 O
ATOM 6 C5' C A 39 27.724 10.873 55.165 1.00 33.30 C
ATOM 7 C4' C A 39 26.648 10.329 56.085 1.00 32.90 C
ATOM 8 O4' C A 39 25.964 9.223 55.444 1.00 32.92 O
ATOM 9 C3' C A 39 27.155 9.705 57.372 1.00 32.98 C
ATOM 10 O3' C A 39 27.511 10.700 58.320 1.00 33.37 O
ATOM 11 C2' C A 39 25.923 8.908 57.783 1.00 32.23 C
ATOM 12 O2' C A 39 24.890 9.718 58.306 1.00 30.94 O
ATOM 13 C1' C A 39 25.502 8.323 56.437 1.00 32.69 C
ATOM 14 N1 C A 39 26.078 6.965 56.202 1.00 33.10 N
ATOM 15 C2 C A 39 25.461 5.854 56.787 1.00 33.30 C
ATOM 16 O2 C A 39 24.447 6.023 57.473 1.00 33.85 O
ATOM 17 N3 C A 39 25.991 4.622 56.586 1.00 33.23 N
ATOM 18 C4 C A 39 27.091 4.484 55.845 1.00 33.34 C
ATOM 19 N4 C A 39 27.578 3.250 55.676 1.00 32.95 N
ATOM 20 C5 C A 39 27.741 5.605 55.245 1.00 33.38 C
ATOM 21 C6 C A 39 27.205 6.814 55.448 1.00 32.92 C
ATOM 22 P C A 40 28.713 10.421 59.337 1.00 33.99 P
ATOM 23 OP1 C A 40 28.954 11.661 60.107 1.00 34.27 O
ATOM 24 OP2 C A 40 29.821 9.799 58.578 1.00 33.69 O
ATOM 25 O5' C A 40 28.095 9.317 60.319 1.00 34.12 O
TER
ATOM 1 O3' G B 6 23.836 -5.758 62.028 1.00 33.77 O
ATOM 2 P G B 7 22.697 -5.438 60.947 1.00 32.96 P
ATOM 3 OP1 G B 7 21.545 -6.321 61.226 1.00 33.44 O
ATOM 4 OP2 G B 7 23.306 -5.424 59.601 1.00 33.43 O
ATOM 5 O5' G B 7 22.289 -3.938 61.311 1.00 32.54 O
ATOM 6 C5' G B 7 21.890 -3.614 62.633 1.00 31.91 C
ATOM 7 C4' G B 7 21.723 -2.114 62.744 1.00 31.77 C
ATOM 8 O4' G B 7 23.017 -1.483 62.581 1.00 31.54 O
ATOM 9 C3' G B 7 20.904 -1.497 61.624 1.00 32.15 C
ATOM 10 O3' G B 7 19.513 -1.659 61.850 1.00 32.62 O
ATOM 11 C2' G B 7 21.347 -0.047 61.730 1.00 31.86 C
ATOM 12 O2' G B 7 20.808 0.586 62.873 1.00 33.03 O
ATOM 13 C1' G B 7 22.846 -0.243 61.919 1.00 30.94 C
ATOM 14 N9 G B 7 23.632 -0.232 60.686 1.00 30.42 N
ATOM 15 C8 G B 7 24.272 -1.297 60.099 1.00 29.89 C
ATOM 16 N7 G B 7 24.923 -0.979 59.013 1.00 29.95 N
ATOM 17 C5 G B 7 24.708 0.385 58.871 1.00 30.04 C
ATOM 18 C6 G B 7 25.168 1.285 57.878 1.00 29.74 C
ATOM 19 O6 G B 7 25.878 1.045 56.893 1.00 29.13 O
ATOM 20 N1 G B 7 24.718 2.584 58.107 1.00 29.34 N
ATOM 21 C2 G B 7 23.923 2.968 59.163 1.00 29.48 C
ATOM 22 N2 G B 7 23.592 4.268 59.216 1.00 28.83 N
ATOM 23 N3 G B 7 23.490 2.135 60.103 1.00 29.71 N
ATOM 24 C4 G B 7 23.918 0.863 59.895 1.00 30.02 C
ATOM 25 P G B 8 18.551 -1.929 60.601 1.00 33.28 P
ATOM 26 OP1 G B 8 17.213 -2.267 61.128 1.00 32.89 O
ATOM 27 OP2 G B 8 19.235 -2.869 59.683 1.00 32.34 O
ATOM 28 O5' G B 8 18.503 -0.499 59.880 1.00 33.14 O
TER
Atoms:
C2: (25.461,5.854,56.787)
OP1: (30.310,11.493,53.912)
OP2: (30.662,8.963,53.647)
C4: (27.091,4.484,55.845)
O5': (28.660,9.857,54.832)
C3': (27.155,9.705,57.372)
C1': (25.502,8.323,56.437)
O4': (25.964,9.223,55.444)
C5': (27.724,10.873,55.165)
P: (29.759,10.135,53.705)
O2: (24.447,6.023,57.473)
C4': (26.648,10.329,56.085)
C2': (25.923,8.908,57.783)
O2': (24.890,9.718,58.306)
N1: (26.078,6.965,56.202)
N3: (25.991,4.622,56.586)
N4: (27.578,3.250,55.676)
C6: (27.205,6.814,55.448)
C5: (27.741,5.605,55.245)
O3': (27.511,10.700,58.320)
OP1: (30.310,11.493,53.912)
OP2: (30.662,8.963,53.647)
C4: (27.091,4.484,55.845)
O5': (28.660,9.857,54.832)
C3': (27.155,9.705,57.372)
C1': (25.502,8.323,56.437)
O4': (25.964,9.223,55.444)
C5': (27.724,10.873,55.165)
P: (29.759,10.135,53.705)
O2: (24.447,6.023,57.473)
C4': (26.648,10.329,56.085)
C2': (25.923,8.908,57.783)
O2': (24.890,9.718,58.306)
N1: (26.078,6.965,56.202)
N3: (25.991,4.622,56.586)
N4: (27.578,3.250,55.676)
C6: (27.205,6.814,55.448)
C5: (27.741,5.605,55.245)
O3': (27.511,10.700,58.320)
OP1: (21.545,-6.321,61.226)
OP2: (23.306,-5.424,59.601)
C3': (20.904,-1.497,61.624)
C1': (22.846,-0.243,61.919)
C5': (21.890,-3.614,62.633)
O6: (25.878,1.045,56.893)
O4': (23.017,-1.483,62.581)
C8: (24.272,-1.297,60.099)
C2: (23.923,2.968,59.163)
C6: (25.168,1.285,57.878)
C5: (24.708,0.385,58.871)
C4: (23.918,0.863,59.895)
P: (22.697,-5.438,60.947)
C4': (21.723,-2.114,62.744)
C2': (21.347,-0.047,61.730)
O2': (20.808,0.586,62.873)
N1: (24.718,2.584,58.107)
N2: (23.592,4.268,59.216)
N3: (23.490,2.135,60.103)
N7: (24.923,-0.979,59.013)
N9: (23.632,-0.232,60.686)
O5': (22.289,-3.938,61.311)
O3': (19.513,-1.659,61.850)
OP2: (23.306,-5.424,59.601)
C3': (20.904,-1.497,61.624)
C1': (22.846,-0.243,61.919)
C5': (21.890,-3.614,62.633)
O6: (25.878,1.045,56.893)
O4': (23.017,-1.483,62.581)
C8: (24.272,-1.297,60.099)
C2: (23.923,2.968,59.163)
C6: (25.168,1.285,57.878)
C5: (24.708,0.385,58.871)
C4: (23.918,0.863,59.895)
P: (22.697,-5.438,60.947)
C4': (21.723,-2.114,62.744)
C2': (21.347,-0.047,61.730)
O2': (20.808,0.586,62.873)
N1: (24.718,2.584,58.107)
N2: (23.592,4.268,59.216)
N3: (23.490,2.135,60.103)
N7: (24.923,-0.979,59.013)
N9: (23.632,-0.232,60.686)
O5': (22.289,-3.938,61.311)
O3': (19.513,-1.659,61.850)
Image (generated by PyMOL):